ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basdd05 |
|---|---|
| Clone Library Name | barley_pub |
>MYPT1_HUMAN (O14974) Protein phosphatase 1 regulatory subunit 12A (Myosin| phosphatase-targeting subunit 1) (Myosin phosphatase target subunit 1) (Protein phosphatase myosin-binding subunit) Length = 1030 Score = 33.1 bits (74), Expect = 0.34 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Frame = +3 Query: 255 NFLDERSAYLTKFTKDADTEFDMIGQNAMKELD----QIGDQIMERLDSKMQSYEETAEM 422 ++L+ER Y ++ KD T+F + + + E + Q+ D ME D K+Q + T Sbjct: 912 SYLEERKPYSSRLEKDDSTDFKKLYEQILAENEKLKAQLHDTNMELTDLKLQLEKATQRQ 971 Query: 423 QR------QEIEMNER 452 +R E+E ER Sbjct: 972 ERFADRSLLEMEKRER 987
>TF3B_MOUSE (Q8CFK2) Transcription factor IIIB 90 kDa subunit (TFIIIB90)| (hTFIIIB90) (B-related factor 1) (BRF-1) Length = 676 Score = 32.7 bits (73), Expect = 0.45 Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 10/117 (8%) Frame = +3 Query: 105 VHQSRRRFSICKSSSEDAGSDAPLPHGGDQRQQEVLAKIAMLQ-TQKVRITNFLDERSAY 281 +H RR +C ++ A H + +EV++ + + + T + R+T F D ++ Sbjct: 219 MHTGRRPSGLCGAALLVAAR----MHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 274 Query: 282 LT--KFTK-DADTEFDMIGQNA------MKELDQIGDQIMERLDSKMQSYEETAEMQ 425 LT +F K D + E D A MK+L+Q+ + +E ++ ++ SY++ E++ Sbjct: 275 LTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIE 331
>TF3B_HUMAN (Q92994) Transcription factor IIIB 90 kDa subunit (TFIIIB90)| (hTFIIIB90) (B-related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor, RNA polymerase III, subunit 2) (TAF3B2) Length = 677 Score = 32.7 bits (73), Expect = 0.45 Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 10/117 (8%) Frame = +3 Query: 105 VHQSRRRFSICKSSSEDAGSDAPLPHGGDQRQQEVLAKIAMLQ-TQKVRITNFLDERSAY 281 +H RR +C ++ A H + +EV++ + + + T + R+T F D ++ Sbjct: 219 MHTGRRPSGLCGAALLVAAR----MHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 274 Query: 282 LT--KFTK-DADTEFDMIGQNA------MKELDQIGDQIMERLDSKMQSYEETAEMQ 425 LT +F K D + E D A MK+L+Q+ + +E ++ ++ SY++ E++ Sbjct: 275 LTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIE 331
>MYPT1_RAT (Q10728) Protein phosphatase 1 regulatory subunit 12A (Myosin| phosphatase-targeting subunit 1) (Myosin phosphatase target subunit 1) (Protein phosphatase myosin-binding subunit) (MBSP) (Serine/threonine protein phosphatase PP1 smooth muscle reg Length = 1032 Score = 32.3 bits (72), Expect = 0.58 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Frame = +3 Query: 255 NFLDERSAYLTKFTKDADTEFDMIGQNAMKELD----QIGDQIMERLDSKMQSYEETAEM 422 ++L+ER Y ++ KD T+F + + + E + Q+ D ME D K+Q + T Sbjct: 914 SYLEERKPYGSRLEKDDSTDFKKLYEQILAENEKLKAQLHDTNMELTDLKLQLEKATQRQ 973 Query: 423 QR------QEIEMNER 452 +R E+E ER Sbjct: 974 ERFADRSLLEMEKRER 989
>TIG_OCEIH (Q8CXB7) Trigger factor (TF)| Length = 428 Score = 30.8 bits (68), Expect = 1.7 Identities = 12/43 (27%), Positives = 27/43 (62%) Frame = +3 Query: 324 IGQNAMKELDQIGDQIMERLDSKMQSYEETAEMQRQEIEMNER 452 I + KEL ++ D+ + +D +++S +E + +R E+E N++ Sbjct: 239 INEVKAKELPELDDEFAKDVDEEVESLDELKKKKRNELETNKK 281
>CASP8_MOUSE (O89110) Caspase-8 precursor (EC 3.4.22.-) (CASP-8) [Contains:| Caspase-8 subunit p18; Caspase-8 subunit p10] Length = 480 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = +3 Query: 321 MIGQNAMKELDQIGDQIMERLDSKMQSYEETAEMQRQEIEMNERV 455 M+ +N ++ L I DQ+ + L K++ YE ++ +R +E E + Sbjct: 151 MLAENNLETLKSICDQVNKSLLGKIEDYERSSTERRMSLEGREEL 195
>FRPA_NEIMB (Q9K0K9) Iron-regulated protein frpA| Length = 1302 Score = 29.6 bits (65), Expect = 3.8 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +3 Query: 294 TKDADTEFDMIGQNAMKELDQIGDQIMERLDSKMQSYEETAEMQRQEI 437 TK AD F G A+ ELD GD I+ D+ QS ++ + I Sbjct: 353 TKLADGSFAKHGYAALAELDSNGDNIINAADAAFQSLRVWQDLNQDGI 400
>CENPE_HUMAN (Q02224) Centromeric protein E (CENP-E protein)| Length = 2663 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/61 (22%), Positives = 30/61 (49%) Frame = +3 Query: 228 LQTQKVRITNFLDERSAYLTKFTKDADTEFDMIGQNAMKELDQIGDQIMERLDSKMQSYE 407 ++T+ +R+T L E + TK+ D + + + E DQ+ + + E + ++ E Sbjct: 1663 IETENIRLTQILHENLEEMRSVTKERD-DLRSVEETLKVERDQLKENLRETITRDLEKQE 1721 Query: 408 E 410 E Sbjct: 1722 E 1722
>K0494_HUMAN (O75071) Protein KIAA0494| Length = 495 Score = 29.3 bits (64), Expect = 4.9 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = +3 Query: 234 TQKVRITNFLDERSAYLTKFTKDADTEFDMIGQNAMKELDQIGDQIMERLDS-KMQSYEE 410 TQ+V N ++ ++K K A+ F M+G + Q DQ+ R D+ K+QS ++ Sbjct: 303 TQRV---NLIESDVVAMSKVEKKANLSFSMMGDRSATLKRQSLDQVTNRTDTVKIQSIKK 359 Query: 411 TAEMQRQEIEMNERV 455 Q ++ E++ Sbjct: 360 EDSSNSQVSKLREKL 374
>MYH10_HUMAN (P35580) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 29.3 bits (64), Expect = 4.9 Identities = 23/88 (26%), Positives = 39/88 (44%) Frame = +3 Query: 186 GDQRQQEVLAKIAMLQTQKVRITNFLDERSAYLTKFTKDADTEFDMIGQNAMKELDQIGD 365 GD+ + E+ K + LQ + ++ L+E KF KDA + + Q+ + L + Sbjct: 1271 GDRLRVELAEKASKLQNELDNVSTLLEEAEKKGIKFAKDAASLESQL-QDTQELLQEETR 1329 Query: 366 QIMERLDSKMQSYEETAEMQRQEIEMNE 449 Q + Q EE +Q Q+ E E Sbjct: 1330 QKLNLSSRIRQLEEEKNSLQEQQEEEEE 1357
>RBP2_HUMAN (P49792) Ran-binding protein 2 (RanBP2) (Nuclear pore complex| protein Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270) Length = 3224 Score = 29.3 bits (64), Expect = 4.9 Identities = 19/75 (25%), Positives = 36/75 (48%) Frame = +3 Query: 195 RQQEVLAKIAMLQTQKVRITNFLDERSAYLTKFTKDADTEFDMIGQNAMKELDQIGDQIM 374 R+ E + A+ ++ N+L + YL K D+D+ ++ K+L + + Sbjct: 689 RKAEDIENDALSPEEQEECKNYLRKTRDYLIKIIDDSDSNLSVV-----KKLPVPLESVK 743 Query: 375 ERLDSKMQSYEETAE 419 E L+S MQ E+ +E Sbjct: 744 EMLNSVMQELEDYSE 758
>MYO1_CAEEL (P02567) Myosin-1 (Myosin heavy chain D) (MHC D)| Length = 1938 Score = 28.9 bits (63), Expect = 6.4 Identities = 21/85 (24%), Positives = 39/85 (45%) Frame = +3 Query: 186 GDQRQQEVLAKIAMLQTQKVRITNFLDERSAYLTKFTKDADTEFDMIGQNAMKELDQIGD 365 G + QEV + L+ +K + + LDE A L + E + E+ QI Sbjct: 1526 GGRTYQEVHKSVRRLEQEKDELQHALDEAEAAL-------EAEESKV-LRLQIEVQQIRS 1577 Query: 366 QIMERLDSKMQSYEETAEMQRQEIE 440 +I +R+ K + +E T + ++ +E Sbjct: 1578 EIEKRIQEKEEEFENTRKNHQRALE 1602
>RBP26_HUMAN (Q68DN6) Ran-binding protein 2-like 6 (RanBP2L6)| Length = 1748 Score = 28.9 bits (63), Expect = 6.4 Identities = 19/75 (25%), Positives = 35/75 (46%) Frame = +3 Query: 195 RQQEVLAKIAMLQTQKVRITNFLDERSAYLTKFTKDADTEFDMIGQNAMKELDQIGDQIM 374 R+ E + A+ ++ N+L + YL K D+D+ ++ K+L + + Sbjct: 680 RKAEDIENDAVFPEEQEECKNYLRKTRDYLIKIIDDSDSNLSVV-----KKLPVPLESVK 734 Query: 375 ERLDSKMQSYEETAE 419 E L S MQ E+ +E Sbjct: 735 EMLKSVMQELEDYSE 749
>FRPA_NEIMC (P55126) Iron-regulated protein frpA| Length = 1115 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 Query: 294 TKDADTEFDMIGQNAMKELDQIGDQIMERLDSKMQSYEETAEMQRQEI 437 TK AD F G A+ ELD GD I+ D+ Q+ ++ + I Sbjct: 366 TKLADGSFAKHGYAALAELDSNGDNIINAADAAFQTLRVWQDLNQDGI 413
>TIG_BACHD (Q9K8F3) Trigger factor (TF)| Length = 431 Score = 28.5 bits (62), Expect = 8.4 Identities = 22/90 (24%), Positives = 40/90 (44%) Frame = +3 Query: 174 LPHGGDQRQQEVLAKIAMLQTQKVRITNFLDERSAYLTKFTKDADTEFDMIGQNAMKELD 353 LP D+ ++V ++ L K ++ L++ A+ K DT +NA ++ Sbjct: 247 LPELDDEFAKDVDEEVESLDELKKKLREKLEKDRAHEADHEK-RDTLIQKASENATIDIP 305 Query: 354 QIGDQIMERLDSKMQSYEETAEMQRQEIEM 443 + I LD Q +E+ +MQ +EM Sbjct: 306 EA--MINTELDRMTQEFEQRLQMQGMNLEM 333
>RGPD8_HUMAN (Q99666) RANBP2-like and GRIP domain-containing protein 8| (Ran-binding protein 2-like 1) (RanBP2L1) (Sperm membrane protein BS-63) Length = 1765 Score = 28.5 bits (62), Expect = 8.4 Identities = 18/75 (24%), Positives = 35/75 (46%) Frame = +3 Query: 195 RQQEVLAKIAMLQTQKVRITNFLDERSAYLTKFTKDADTEFDMIGQNAMKELDQIGDQIM 374 R+ E + A+ ++ N+L + YL K D D+ ++ K+L + + Sbjct: 689 RKAEDIENDALSPEEQEECRNYLTKTRDYLIKIIDDGDSNLSVV-----KKLSVPLESVK 743 Query: 375 ERLDSKMQSYEETAE 419 + L+S MQ E+ +E Sbjct: 744 QMLNSVMQELEDYSE 758
>KPC1_YEAST (P24583) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)| Length = 1151 Score = 28.5 bits (62), Expect = 8.4 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Frame = +3 Query: 144 SSEDAGSDAPLPHGGDQRQQEVLAKIAMLQTQ-KVRITNFLDERSAYLTKFTKDADTEFD 320 S + G D+P ++ ++ K LQT + ++ F+DE AYL FT+ A + Sbjct: 601 SPQKVGRDSPT-----KQHDPIIDKKISLQTHGREKLNKFIDENEAYL-NFTEGAQQTAE 654 Query: 321 MIGQNAMKELDQIGDQ----IMERLDSKMQSYEETAEMQRQEIEM 443 + K LD ++ + + Q++E ++ R E+E+ Sbjct: 655 F--SSPEKTLDPTSNRRSLGLTDLSIEHSQTWESKDDLMRDELEL 697
>LMO7_HUMAN (Q8WWI1) LIM domain only protein 7 (LOMP) (F-box only protein 20)| Length = 1683 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Frame = +3 Query: 342 KELDQIGDQIMERLDSKMQSYEETAEMQRQEI--EMNER 452 K LDQIG+ + SK + AE++RQ+I EM +R Sbjct: 1439 KYLDQIGNMTSSQRRSKKEQVPSGAELERQQILQEMRKR 1477
>FRPC_NEIMC (P55127) Iron-regulated protein frpC| Length = 1829 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 Query: 294 TKDADTEFDMIGQNAMKELDQIGDQIMERLDSKMQSYEETAEMQRQEI 437 TK AD F G A+ ELD GD I+ D+ Q+ ++ + I Sbjct: 480 TKLADGSFAKHGYAALAELDSNGDNIINAADAAFQTLRVWQDLNQDGI 527
>FRPC_NEIMB (Q9JYV5) Iron-regulated protein frpC| Length = 1829 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 Query: 294 TKDADTEFDMIGQNAMKELDQIGDQIMERLDSKMQSYEETAEMQRQEI 437 TK AD F G A+ ELD GD I+ D+ Q+ ++ + I Sbjct: 480 TKLADGSFAKHGYAALAELDSNGDNIINAADAAFQTLRVWQDLNQDGI 527 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,555,809 Number of Sequences: 219361 Number of extensions: 999237 Number of successful extensions: 3434 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3348 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3430 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
