Clone Information

BLAST Search Result

Clone Name	basdc03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	DYI2_ANTCR (Q16959) Dynein intermediate chain 2, ciliary	35	0.048
2	NFL_COTJA (Q02916) Neurofilament triplet L protein (Neurofilamen...	34	0.082
3	SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog	33	0.14
4	LIN3_CAEEL (Q03345) Protein lin-3 precursor (Abnormal cell linea...	32	0.41
5	YCF1_TOBAC (P12222) Hypothetical 226 kDa protein ycf1 (ORF 1901)	32	0.41
6	EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)	32	0.41
7	IF2_SYMTH (Q67P86) Translation initiation factor IF-2	32	0.53
8	MSK3_MEDSA (P51139) Glycogen synthase kinase-3 homolog MsK-3 (EC...	31	0.91
9	IF2_PSEPF (Q3KI84) Translation initiation factor IF-2	31	0.91
10	NUCL_CHICK (P15771) Nucleolin (Protein C23)	30	1.2
11	IF2_PSEU2 (Q4ZNR2) Translation initiation factor IF-2	30	1.5
12	NUSG_STRGB (P52852) Transcription antitermination protein nusG	30	1.5
13	RPN2_SCHPO (O74762) 26S proteasome regulatory subunit rpn2	30	1.5
14	ZMPB_STRR6 (Q8DQN5) Zinc metalloprotease zmpB precursor (EC 3.4....	30	2.0
15	NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa neur...	30	2.0
16	ERF2_DEBHA (Q9HGI6) Eukaryotic peptide chain release factor GTP-...	30	2.0
17	YCF2_OENPI (P31568) Protein ycf2 (Fragment)	29	2.6
18	PHAR2_HUMAN (O75167) Phosphatase and actin regulator 2	29	2.6
19	NFH_HUMAN (P12036) Neurofilament triplet H protein (200 kDa neur...	29	2.6
20	NASP_RABIT (P27123) Nuclear autoantigenic sperm protein (NASP)	29	2.6
21	CYCR_CHRVI (O82947) Photosynthetic reaction center cytochrome c ...	29	3.4
22	IF2_PSEF5 (Q4KIF6) Translation initiation factor IF-2	29	3.4
23	H1B_CHITE (P40276) Histone H1B	29	3.4
24	ZMPB_STRPN (Q9L7Q2) Zinc metalloprotease zmpB precursor (EC 3.4....	29	3.4
25	LEAD8_DAUCA (P20075) Embryonic protein DC-8	29	3.4
26	LAML2_CAEEL (Q21313) Laminin-like protein K08C7.3 precursor	29	3.4
27	PSIP1_MOUSE (Q99JF8) PC4 and SFRS1-interacting protein (Lens epi...	29	3.4
28	NCOR1_XENTR (Q4KKX4) Nuclear receptor corepressor 1 (N-CoR1) (N-...	28	4.5
29	TNNT2_HUMAN (P45379) Troponin T, cardiac muscle (TnTc) (Cardiac ...	28	4.5
30	YJX4_SCHPO (Q9UU99) Protein C23B6.04c in chromosome III	28	4.5
31	NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurof...	28	4.5
32	ECR1_METTH (O26780) Probable exosome complex RNA-binding protein 1	28	4.5
33	DBP3_USTMA (Q4PDT1) ATP-dependent RNA helicase DBP3 (EC 3.6.1.-)	28	4.5
34	TENA_CHICK (P10039) Tenascin precursor (TN) (Hexabrachion) (Cyto...	28	4.5
35	TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-li...	28	4.5
36	HSP82_YEAST (P02829) ATP-dependent molecular chaperone HSP82 (He...	28	4.5
37	MUCB1_XENLA (P38565) Integumentary mucin B.1 (FIM-B.1) (Fragment)	28	5.9
38	NUSG_STRCO (P36266) Transcription antitermination protein nusG	28	5.9
39	ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (I...	28	5.9
40	ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0	28	5.9
41	IF2_VIBVY (Q7MI09) Translation initiation factor IF-2	28	7.7
42	IF2_VIBVU (Q8DBW0) Translation initiation factor IF-2	28	7.7
43	ENGA_XANAC (Q8PKY6) GTP-binding protein engA	28	7.7
44	RS2_STRCO (O31212) 30S ribosomal protein S2	28	7.7
45	PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presyna...	28	7.7
46	NBS1_SCHPO (O43070) DNA repair and telomere maintenance protein ...	28	7.7
47	LYAM3_BOVIN (P42201) P-selectin precursor (Granule membrane prot...	28	7.7
48	DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-re...	28	7.7
49	DDX18_MOUSE (Q8K363) ATP-dependent RNA helicase DDX18 (EC 3.6.1....	28	7.7
50	TRP_DROME (P19334) Transient receptor potential protein	28	7.7
51	HBXAP_HUMAN (Q96T23) Hepatitis B virus X-associated protein (HBV...	28	7.7
52	DRS1_DEBHA (Q6BTL5) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)	28	7.7
53	CALD1_CHICK (P12957) Caldesmon (CDM)	28	7.7

>DYI2_ANTCR (Q16959) Dynein intermediate chain 2, ciliary|
          Length = 702

 Score = 35.0 bits (79), Expect = 0.048
 Identities = 23/61 (37%), Positives = 27/61 (44%)
 Frame = +1

Query: 25  EMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKEDVK 204
           E  ++EA E  K  D E K  E               P E   + E+STPAPAE K D K
Sbjct: 145 EQAISEAGEEKKEEDGEQKTEE---------------PKEGEKRDEESTPAPAEAKSDQK 189

Query: 205 L 207
           L
Sbjct: 190 L 190

to top

>NFL_COTJA (Q02916) Neurofilament triplet L protein (Neurofilament light|
           polypeptide) (NF-L)
          Length = 555

 Score = 34.3 bits (77), Expect = 0.082
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +1

Query: 25  EMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKED 198
           ++ + E IEAAK+ + +  PAE  + E K + E + A  E+A + E+     +E  ++
Sbjct: 452 QIEIEETIEAAKAGEAKAAPAEEGEEEEKEEGEEEEAGGEEAEEEEEGAKEESEEGKE 509

to top

>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 40  EAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKEDVK 204
           EA  AAK+ + E+K  E      K +EE KA  + +A K E    A A+  + V+
Sbjct: 576 EAKAAAKAKEEELKKEEVAKAAAKAEEEQKATAAAEAAKAEAKRAAEADASKKVE 630



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
 Frame = +1

Query: 4   EAKGTDVEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPA 183
           +AK    E T   A EAA   + E+K A     E K   E KAA + +  + E    A A
Sbjct: 525 KAKVEATEKTKKAAKEAADK-EAELKKAAEKAAEEKAKAEKKAAEAREKEEKEAKAAAKA 583

Query: 184 EH----KEDV-----KLXXXXXXXXXXXXXKQEDVNAAESDVT 285
           +     KE+V     K              K E   AAE+D +
Sbjct: 584 KEEELKKEEVAKAAAKAEEEQKATAAAEAAKAEAKRAAEADAS 626

to top

>LIN3_CAEEL (Q03345) Protein lin-3 precursor (Abnormal cell lineage protein 3)|
           (Lethal protein 94)
          Length = 438

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
 Frame = +1

Query: 16  TDVEMTVAEAIEAAKSTDVEMKPAETNDVEM-------KVDEEVKAA--PSEDAGKTEDS 168
           T  E T++EA +  K T+   K     + E        KVDEEV+ A   +EDA +   S
Sbjct: 77  TPTETTISEAGDDEKRTEEVAKELIEKEAEYEGEYEDEKVDEEVEEALKYNEDATQDATS 136

Query: 169 TPAPAEHKEDVKL 207
           T  PA  KE  KL
Sbjct: 137 TLKPAVRKEIEKL 149

to top

>YCF1_TOBAC (P12222) Hypothetical 226 kDa protein ycf1 (ORF 1901)|
          Length = 1901

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 34  VAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKT-EDSTPAPAEHKED 198
           + + ++ A  T+  ++  E  DVE++   E+K    E  G T ED  P+P+   E+
Sbjct: 242 LTKKLKEASKTEERVESEEERDVEIETASEMKGTKQEQEGSTEEDPYPSPSLFSEE 297

to top

>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +1

Query: 31   TVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKEDV 201
            T  E I  +K  D +M+  ET +   ++  E+K    + +     S+PAP + K+ +
Sbjct: 992  TQPEDISESKVEDCKMESTETEERSTELKTEIKEEEDQPSTSATQSSPAPGQSKKKI 1048

to top

>IF2_SYMTH (Q67P86) Translation initiation factor IF-2|
          Length = 1044

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
 Frame = +1

Query: 49  EAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAG----------KTEDSTPAPAEHKED 198
           EAA++   E +PAE    + +     KAAP E AG          + + +TPA AE K  
Sbjct: 176 EAAQAAQAERRPAE----KAQPAAAAKAAPPEKAGAAPVPGAVAEQKQAATPAAAEQKPA 231

Query: 199 VKLXXXXXXXXXXXXXKQEDVNAAESDVTPAPAA 300
            K               +    A+    + APAA
Sbjct: 232 GKAEQTAGAAQAKPARAEAGTGASSRPASAAPAA 265

to top

>MSK3_MEDSA (P51139) Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.11.1)|
          Length = 411

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 55  AKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTE 162
           A S  VE  P E ND++++ D+E++AA   D   TE
Sbjct: 17  ASSVGVEKLPEEMNDMKIRDDKEMEAATIVDGNGTE 52

to top

>IF2_PSEPF (Q3KI84) Translation initiation factor IF-2|
          Length = 837

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 40  EAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAE 186
           E IEA +  +++ + A  N    K +EE +    E+A +   +  APAE
Sbjct: 98  EEIEAERKRELDERRAVENAARQKAEEEARVRAEEEARRQPAAPSAPAE 146

to top

>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 22/81 (27%), Positives = 31/81 (38%)
 Frame = +1

Query: 37  AEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKEDVKLXXX 216
           A A+ A K   V  K  E+ + E + DEE      E   +  D+TPAP +     K    
Sbjct: 154 AAAVPAKKPAVVPAKQ-ESEEEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPA 212

Query: 217 XXXXXXXXXXKQEDVNAAESD 279
                      +ED +  E D
Sbjct: 213 KAKAESEDEEDEEDEDEDEED 233

to top

>IF2_PSEU2 (Q4ZNR2) Translation initiation factor IF-2|
          Length = 841

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +1

Query: 40  EAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGK---TEDSTPAPAE 186
           E IEA +  +++ + A  N    K +EE K    EDA        S PA AE
Sbjct: 98  EEIEAERKREMDERRAVENAARQKAEEEAKRRAEEDARSQPAASQSAPAAAE 149

to top

>NUSG_STRGB (P52852) Transcription antitermination protein nusG|
          Length = 309

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 52  AAKSTDVEMKPAETN-DVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKEDVK 204
           A    D+E    ET+ DVE   DE+V+A   ED    E +   PA   + ++
Sbjct: 63  AETDEDIEAGAVETDEDVETDTDEDVEAGTDEDVAVAEAAEEEPAAPVDSIQ 114

to top

>RPN2_SCHPO (O74762) 26S proteasome regulatory subunit rpn2|
          Length = 965

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +1

Query: 16   TDVEMTVAEAIEAAKSTDVEMKPAETNDVEMKVD----EEVKAAPSE-DAGKTEDSTPAP 180
            T V  T  +A   AK  + E     +ND EMK+D    EE +A P E D  K++D +   
Sbjct: 813  TAVLSTTVKAQARAKRAEREKASKGSNDDEMKIDKKTTEEKEATPMEMDEEKSQDISING 872

Query: 181  AEHKEDVK 204
               KE+ K
Sbjct: 873  NSKKEEPK 880

to top

>ZMPB_STRR6 (Q8DQN5) Zinc metalloprotease zmpB precursor (EC 3.4.24.-)|
          Length = 1876

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
 Frame = +1

Query: 25  EMTVAEAIEAAKSTDVEMKPAETNDVEM---------KVDEEVKAAPSEDAGKTEDSTPA 177
           E+TV E      +T+ E    E   VE          K +E  K  P  +   T+D+ P 
Sbjct: 172 EVTVVEVETPQSTTNQEQARTENQVVETEEAPKEEAPKTEESPKEEPKSEVKPTDDTLPK 231

Query: 178 PAEHKED 198
             E KED
Sbjct: 232 VEEGKED 238

to top

>NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
           (Fragment)
          Length = 644

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
 Frame = +1

Query: 4   EAKGTDVEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEE------------VKAAPSED 147
           EA+G + E    E + AAK + V+    E  + E + +EE            VK+  +E+
Sbjct: 278 EAEGKEEEQEAEEEVAAAKKSPVKATTPEIKEEEGEKEEEGQEEEEEEEDEGVKSDQAEE 337

Query: 148 AG-KTEDSTPAPAEHKE-----DVKLXXXXXXXXXXXXXKQEDVNAAESDVTPA 291
            G + E S+    E +E     + ++             K E+V A E  VT A
Sbjct: 338 GGSEKEGSSKNEGEQEEGETEAEGEVEEAEAKEEKKTEEKSEEVAAKEEPVTEA 391

to top

>ERF2_DEBHA (Q9HGI6) Eukaryotic peptide chain release factor GTP-binding|
           subunit (ERF2) (Translation release factor 3)
           (Polypeptide release factor 3) (ERF3) (ERF-3)
          Length = 701

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = +1

Query: 79  KPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKEDVKLXXXXXXXXXXXXXKQED 258
           KP +T  +++     +K A ++ A +TE     PA  +++                K+  
Sbjct: 150 KPKKT--LKLASSSGIKLANAKKAPETESKEATPAATEKEATPAATEKEATPAATEKEAT 207

Query: 259 VNAAESDVTPAPA 297
             A E + TPAPA
Sbjct: 208 PAATEKETTPAPA 220

to top

>YCF2_OENPI (P31568) Protein ycf2 (Fragment)|
          Length = 721

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +1

Query: 4   EAKGTDVEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPA 183
           E +GT+ E+   E  E  + T+ E++  E  +VE   DEEV+    E+   TE+      
Sbjct: 214 EVEGTEEEVEGTE--EEVEGTEEEVEGTE-EEVEGTEDEEVEGTEDEEVEGTEEEVEGTE 270

Query: 184 EHKE 195
           E  E
Sbjct: 271 EEVE 274

to top

>PHAR2_HUMAN (O75167) Phosphatase and actin regulator 2|
          Length = 634

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 61  STDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAP 180
           ++D++ +PAET     K+++ V  A  ++ GK +   P P
Sbjct: 288 TSDLKGEPAETRVESFKLEQTVPGAEEQNTGKFKSMVPPP 327

to top

>NFH_HUMAN (P12036) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1026

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 23/89 (25%), Positives = 36/89 (40%)
 Frame = +1

Query: 25  EMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKEDVK 204
           E+T  E  EA +    E +  E  + E   +EE K+ P+E+A   E    +P   KE+ K
Sbjct: 469 EVTEEEEKEAKEEEGKEEEGGEEEEAEGG-EEETKSPPAEEAASPEKEAKSPV--KEEAK 525

Query: 205 LXXXXXXXXXXXXXKQEDVNAAESDVTPA 291
                            +V + E   +PA
Sbjct: 526 SPAEAKSPEKEEAKSPAEVKSPEKAKSPA 554

to top

>NASP_RABIT (P27123) Nuclear autoantigenic sperm protein (NASP)|
          Length = 680

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +1

Query: 22  VEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKEDV 201
           V +T  +  E ++  +    P   N+ E+   +  + A   + GK+   T    EHKE V
Sbjct: 99  VALTPDQLTETSEEAEGAAAPEGLNEAEVTSGKSEQEAADAEKGKSVSGTDVQEEHKEQV 158

Query: 202 K 204
           +
Sbjct: 159 E 159

to top

>CYCR_CHRVI (O82947) Photosynthetic reaction center cytochrome c subunit|
           precursor
          Length = 383

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 49  EAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGK-TEDSTPAPAE 186
           EAA +T+ E   AE   VE    EE   AP E A    ED+ PAP +
Sbjct: 337 EAAPATE-EAPAAEAEAVEAAPVEEAAPAPVEQAAAPVEDAAPAPQQ 382

to top

>IF2_PSEF5 (Q4KIF6) Translation initiation factor IF-2|
          Length = 838

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
 Frame = +1

Query: 40  EAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGK----------TEDSTPAPAEH 189
           E IEA +  ++E + A  N    K +EE K    E+A +           + + PAPA  
Sbjct: 98  EEIEAERQRELEERRAVENAARQKAEEEAKRRAEEEARRQPAPVAEPVAAQAAAPAPAPV 157

Query: 190 KEDVK 204
            E V+
Sbjct: 158 VEPVQ 162

to top

>H1B_CHITE (P40276) Histone H1B|
          Length = 232

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = +1

Query: 1   GEAKGTDVEMTVAEAIEAAKSTDVEM-------KPAETNDVEMKVDEEVKAAPSEDAGKT 159
           GE K   V+ T+A+  +AA +T ++        KPA       K   + KAAP   A KT
Sbjct: 144 GEKK---VKKTIAKKPKAAAATKIKKPVAKTTKKPAAAKPAAKKAAPKPKAAPKPKAAKT 200

Query: 160 EDSTPAPAEHK 192
           E      A  K
Sbjct: 201 ETKPKRAAAPK 211

to top

>ZMPB_STRPN (Q9L7Q2) Zinc metalloprotease zmpB precursor (EC 3.4.24.-)|
          Length = 1906

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +1

Query: 16  TDVEMTVAEAIEAAKSTDVEMKPAETNDVEM----KVDEEVKAAPSEDAGKTEDSTPAPA 183
           T VE+   ++I   +    E +  ET +       K +E  K  P  +   T+D+ P   
Sbjct: 174 TVVEVETPQSITNQEQARTENQVVETEEAPKEEAPKTEESPKEEPKSEVKPTDDTLPKVE 233

Query: 184 EHKED 198
           E KED
Sbjct: 234 EGKED 238

to top

>LEAD8_DAUCA (P20075) Embryonic protein DC-8|
          Length = 555

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 79  KPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKED 198
           K AET D  M+  +E K   ++ A +T+D+T   A+  +D
Sbjct: 310 KAAETKDATMEKTKEYKDYTAQKAAETKDATMEKAKEAKD 349

to top

>LAML2_CAEEL (Q21313) Laminin-like protein K08C7.3 precursor|
          Length = 3672

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 61   STDVEMKPAETNDVE-MKVDEEVKAAPSEDAGKTEDSTPAPAEHKED 198
            +T    KP + +DV  + +DEE ++  +     TE+ T  PAE + D
Sbjct: 3246 TTTAAPKPTDDSDVAVLPIDEEEESTTTTTTTTTEEPTEEPAEARPD 3292

to top

>PSIP1_MOUSE (Q99JF8) PC4 and SFRS1-interacting protein (Lens epithelium-derived|
           growth factor)
          Length = 528

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 37  AEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHK 192
           A   ++  S+DVE++  ETN  +   D+E KA+ +ED  K  D T   A  +
Sbjct: 97  ASTKQSNASSDVEVEEKETNVSKEDTDQEEKAS-NEDVTKAVDITTPKAARR 147

to top

>NCOR1_XENTR (Q4KKX4) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2494

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 10  KGTDVEMTVAEAIEAAKSTDVEMKPAETNDV--EMKVDEEVKAAPSEDAGKTEDSTPAPA 183
           +G + +     A E  +   VE + AE ND   E + +EE K    E    T+D T A A
Sbjct: 491 RGRNQQQITRPAQEEKEIEKVEEEKAERNDKKEEERREEEEKEEKEELRDGTKDRTDAIA 550

Query: 184 EHKED 198
           E  ED
Sbjct: 551 EDGED 555

to top

>TNNT2_HUMAN (P45379) Troponin T, cardiac muscle (TnTc) (Cardiac muscle troponin|
           T) (cTnT)
          Length = 297

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 49  EAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAP 180
           E A   D E + AET +   + DEE + A   + G  E+S P P
Sbjct: 34  EEAAEEDAEAE-AETEETRAEEDEEEEEAKEAEDGPMEESKPKP 76

to top

>YJX4_SCHPO (Q9UU99) Protein C23B6.04c in chromosome III|
          Length = 1008

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = +1

Query: 4   EAKGTDVEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAP 180
           E  G D  +  A   EAAK TDV        D    + +E   A +EDA KTE ++ AP
Sbjct: 282 ERDGRDTSLGDASVNEAAKETDV--------DSSRFISDE--KAVTEDAMKTEHASNAP 330

to top

>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 845

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +1

Query: 4   EAKGTDVEMTVAEAIEAAKSTDVEMKPAET--NDVEMKVDEEVKAAPSEDAGKTEDSTPA 177
           EA+  + + T  +  E A   +++++  E   + V     EEVK  P   AGK E     
Sbjct: 571 EAEAKEEKKTEGKVEEMAIKEEIKVEKPEKAKSPVPKSPVEEVKPKPEAKAGKDEQKEEE 630

Query: 178 PAEHKEDV 201
             E K++V
Sbjct: 631 KVEEKKEV 638

to top

>ECR1_METTH (O26780) Probable exosome complex RNA-binding protein 1|
          Length = 311

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = +1

Query: 4   EAKGTDV-EMTVAEAIEAAK--STDVEMKPAETNDVEMKVDE-EVKAAPSEDAGKTEDST 171
           E++GT+  E   +E  E A   S DVE+ P E+ D+E   DE E     SED    E+ T
Sbjct: 231 ESEGTEKPETPESEDFEEASDYSEDVEVSP-ESEDIEEVSDESEDLEVESED---VEEGT 286

Query: 172 PAPAEHKED 198
             PA  ++D
Sbjct: 287 DTPAAEEDD 295

to top

>DBP3_USTMA (Q4PDT1) ATP-dependent RNA helicase DBP3 (EC 3.6.1.-)|
          Length = 585

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
 Frame = +1

Query: 37  AEAIEAAKSTDVEMKPAETN----DVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKEDVK 204
           A A  A+ ST +E  P+  +    D + K D++ K   ++DA   +D   A    KE+ K
Sbjct: 29  AAAAGASASTSLEGSPSPASPAKKDKKDKKDKKDKKRSADDADADDDEKAAKKRRKEEKK 88

Query: 205 LXXXXXXXXXXXXXKQEDVNAAESDVTPAPAA 300
                           E   AA    +PAPAA
Sbjct: 89  --AKKAAAKSGAATSLESTPAA----SPAPAA 114

to top

>TENA_CHICK (P10039) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)|
           (Neuronectin) (GMEM) (JI) (Miotendinous antigen)
           (Glioma-associated-extracellular matrix antigen) (GP
           150-225)
          Length = 1808

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
 Frame = +3

Query: 84  CRNK*CGDES**RGESCS**RCREDRGLHSSTRRTQGRCQTS*A*CR------SCTRGGR 245
           C N  C  +    GE C   RC  D   H+  R  +GRC              SC     
Sbjct: 481 CVNGQCVCDEGYTGEDCGELRCPND--CHNRGRCVEGRCVCDNGFMGEDCGELSCPNDCH 538

Query: 246 QAGRCQCS*V*CHSGTSG 299
           Q GRC      CH G +G
Sbjct: 539 QHGRCVDGRCVCHEGFTG 556

to top

>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)|
          Length = 4289

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
 Frame = +3

Query: 153 EDRGLHSSTR--RTQGRCQTS*A*C-----------RSCTRGGRQAGRCQCS*V*CHSGT 293
           +D G+ S  R    +GRC+     C           RSC RG  Q GRC+     C  G 
Sbjct: 273 DDCGMRSCPRGCSQRGRCENGRCVCNPGYTGEDCGVRSCPRGCSQRGRCKDGRCVCDPGY 332

Query: 294 SG 299
           +G
Sbjct: 333 TG 334

to top

>HSP82_YEAST (P02829) ATP-dependent molecular chaperone HSP82 (Heat shock|
           protein Hsp90 heat-inducible isoform) (82 kDa heat shock
           protein)
          Length = 709

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +1

Query: 22  VEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKEDV 201
           +++ V + +E       E K  E    E K DE+ K    E+  + E+  P   + KE+V
Sbjct: 205 IQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEV 264

Query: 202 K 204
           +
Sbjct: 265 Q 265

to top

>MUCB1_XENLA (P38565) Integumentary mucin B.1 (FIM-B.1) (Fragment)|
          Length = 398

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = +1

Query: 31  TVAEAIEAAKSTDVEMKPA------ETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAE 186
           T  E+  A   T  E  PA      E+     +   E   APSE    + +STPAP+E
Sbjct: 17  TTGESTPAPSETTGESTPAPSETTGESTPAPSETTGESTPAPSETTVPSGESTPAPSE 74

to top

>NUSG_STRCO (P36266) Transcription antitermination protein nusG|
          Length = 300

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 16  TDVEMTVAEAIEAAKSTDVEMKPAETN-DVEMKVDEEVKAAPSED 147
           TD + T AEA E A++TD E   AE + D +    EE +  P  +
Sbjct: 48  TDEDATDAEADETAEATDAEATEAEADADADAAEAEESEEEPEAE 92

to top

>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell|
           protein 0)
          Length = 532

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +1

Query: 7   AKGTDVEM----TVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTP 174
           A+G  VE     + + + E    +D+E+ P    D E   DE      S  A + EDS P
Sbjct: 200 ARGRGVEYIDSSSSSSSSEEETDSDIEVDPNNLTDPEDTSDETSTDNSSAQAPRQEDSRP 259

Query: 175 APA 183
           A A
Sbjct: 260 ARA 262

to top

>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0|
          Length = 532

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +1

Query: 7   AKGTDVEM----TVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTP 174
           A+G  VE     + + + E    +D+E+ P    D E   DE      S  A + EDS P
Sbjct: 200 ARGRGVEYIDSSSSSSSSEEETDSDIEVDPNNLTDPEDTSDETSTDNSSAQAPRQEDSRP 259

Query: 175 APA 183
           A A
Sbjct: 260 ARA 262

to top

>IF2_VIBVY (Q7MI09) Translation initiation factor IF-2|
          Length = 907

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/67 (29%), Positives = 26/67 (38%)
 Frame = +1

Query: 4   EAKGTDVEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPA 183
           EAK    E    EA EAAK    E    E  +   +  EE     +E+A K E       
Sbjct: 106 EAKREAEEAAQREAEEAAKRAAEEAAKREAEEAAKREAEEKAKREAEEAAKREAEKSVDR 165

Query: 184 EHKEDVK 204
           + +E  K
Sbjct: 166 DAEEKAK 172

to top

>IF2_VIBVU (Q8DBW0) Translation initiation factor IF-2|
          Length = 907

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/67 (29%), Positives = 26/67 (38%)
 Frame = +1

Query: 4   EAKGTDVEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPA 183
           EAK    E    EA EAAK    E    E  +   +  EE     +E+A K E       
Sbjct: 106 EAKREAEEAAQREAEEAAKRAAEEAAKREAEEAAKREAEEKAKREAEEAAKREAEKSVDR 165

Query: 184 EHKEDVK 204
           + +E  K
Sbjct: 166 DAEEKAK 172

to top

>ENGA_XANAC (Q8PKY6) GTP-binding protein engA|
          Length = 465

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 13  GTDVEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPA 177
           GTD E   +E      S  V +  A    ++  +DE     P E AG+  D+ PA
Sbjct: 123 GTDEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPEEGAGELLDNDPA 177

to top

>RS2_STRCO (O31212) 30S ribosomal protein S2|
          Length = 310

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 25  EMTVAEAIEAAKSTDVEM--KPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKE 195
           E  + E  +A K  D E   KPAE    E    E  +A  +E A   E +  APA   E
Sbjct: 250 ERDLLEGEKAEKKDDAEAAEKPAEAPAAEAPAAEAAEAPAAEAAPAEEPAAEAPAADAE 308

to top

>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
            cytomatrix protein)
          Length = 5085

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +1

Query: 16   TDVEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHK 192
            TD ++  +E  ++  S   E KP+E  +  +  D++ +  P+E+    E+  P P + K
Sbjct: 1139 TDQKLEESEGKKSKVSALPEKKPSE-EEKAISADKKERKPPAEEKPPLEEKKPIPVDKK 1196

to top

>NBS1_SCHPO (O43070) DNA repair and telomere maintenance protein nbs1|
          Length = 613

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 1   GEAKGTDVEMTVAEAIEAAKSTDVEMKPAETNDV-EMKVDEEVKAAPSEDAGKTED 165
           G+ K T VE     +++   S+    KP E N V E K + EV + PSE+  ++ED
Sbjct: 425 GQGK-TKVEYVSYNSVDKGNSSP--FKPLELNVVGEKKANAEVDSLPSENVQESED 477

to top

>LYAM3_BOVIN (P42201) P-selectin precursor (Granule membrane protein 140)|
           (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion
           molecule 3) (LECAM3) (CD62P antigen)
          Length = 646

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 183 CGCWSGVLGLPCIFTRSSFHLFINFHLHIICFGRL-HLNISALCSFN 46
           C C+ G  G  C + R      +  H+H+ C   L + + ++ CSF+
Sbjct: 183 CSCYPGFYGPECEYVRECGEFDLPQHVHMNCSHPLGNFSFNSHCSFH 229

to top

>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +1

Query: 4   EAKGTDVEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDE---EVKAAPSEDAGKTEDSTP 174
           EAK T++E  +   + A     VEMK  E ND E K+ +   E  A  SE    T     
Sbjct: 469 EAKATELEKKLDSELTARHELQVEMKKME-NDFEQKLQDLQGEKDALDSEKQQITAQKQD 527

Query: 175 APAE 186
             AE
Sbjct: 528 LEAE 531

to top

>DDX18_MOUSE (Q8K363) ATP-dependent RNA helicase DDX18 (EC 3.6.1.-) (DEAD box|
           protein 18)
          Length = 660

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = +1

Query: 73  EMKPAETNDVEMKVDEEVKAAPSEDAG------KTEDSTPAPAEHKEDVK 204
           E  P    D E+K  ++ K   + DAG      KTE+S  A  E ++DVK
Sbjct: 97  EAAPTPPPDSEVKKKKKKKRKMANDAGPDTKKAKTEESAEACEEPEDDVK 146

to top

>TRP_DROME (P19334) Transient receptor potential protein|
          Length = 1275

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 67   DVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKE 195
            D + KPA+ ND +   D++ K    +D    +D    P++ K+
Sbjct: 1186 DKDKKPADNNDKKPADDKDKKPGDDKDKKPGDDKDKKPSDDKD 1228

to top

>HBXAP_HUMAN (Q96T23) Hepatitis B virus X-associated protein (HBV pX-associated|
           protein 8) (Remodeling and spacing factor 1) (Rsf-1)
           (p325 subunit of RSF chromatin remodelling complex)
          Length = 1431

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +1

Query: 4   EAKGTDVEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPA 183
           +++ T VEM   + ++ A+++ +E +P+ET     K   + K  P E+   +E++     
Sbjct: 662 DSEFTKVEM---DNLDNAQTSGIE-EPSETKGSMQKSKFKYKLVPEEETTASENTEITSE 717

Query: 184 EHKEDVKL 207
             KE +KL
Sbjct: 718 RQKEGIKL 725

to top

>DRS1_DEBHA (Q6BTL5) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)|
          Length = 771

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 28  MTVAEAIEAAKSTDVEMKPAETND-VEMKVDEEVKAAPSEDAGKTEDSTPAPAEHKED 198
           M+  EA   A     E +P + ++ VE  +DEE   +  ED    ED+    AE   D
Sbjct: 188 MSATEASANADDDQDEQEPEDDDEGVEADMDEEYPGSDQEDEKPVEDTAEDMAEFYAD 245

to top

>CALD1_CHICK (P12957) Caldesmon (CDM)|
          Length = 771

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +1

Query: 4   EAKGTDVEMTVAEAIEAAKSTDVEMKPAETNDVEMKVDEEVKAAPSEDAGKTEDSTPAPA 183
           E +  + E   AE  E AK+ + E + AE  +   K +EE KAA   +  K E+   A  
Sbjct: 274 EKQKAEEEKKAAEERERAKAEE-EKRAAEERE-RAKAEEERKAAEERERAKAEEERKAAE 331

Query: 184 E 186
           E
Sbjct: 332 E 332


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.294    0.115    0.290 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,150,113
Number of Sequences: 219361
Number of extensions: 546794
Number of successful extensions: 1029
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result