Clone Name | basdc05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK067302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102H14, full insert sequence Length = 3100 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 296 cagccaagctcttcatccagttatttaaggtcacattttattggtatgggattttcacca 355 |||||||||||||| |||||| || |||| ||||| |||||||| ||||| ||||||||| Sbjct: 598 cagccaagctcttcctccagtcatgtaagatcacaatttattggcatggggttttcacca 657 Query: 356 gtgctggttgacagaatgcttcggaaacatggtga 390 || |||||||||| |||||| |||||| ||||| Sbjct: 658 atgttggttgacagggtgcttcagaaacacggtga 692
>dbj|AK063482.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B11, full insert sequence Length = 2694 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 296 cagccaagctcttcatccagttatttaaggtcacattttattggtatgggattttcacca 355 |||||||||||||| |||||| || |||| ||||| |||||||| ||||| ||||||||| Sbjct: 597 cagccaagctcttcctccagtcatgtaagatcacaatttattggcatggggttttcacca 656 Query: 356 gtgctggttgacagaatgcttcggaaacatggtga 390 || |||||||||| |||||| |||||| ||||| Sbjct: 657 atgttggttgacagggtgcttcagaaacacggtga 691
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07, complete sequence Length = 151399 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 296 cagccaagctcttcatccagttatttaaggtcacattttattggtatgggattttcacca 355 |||||||||||||| |||||| || |||| ||||| |||||||| ||||| ||||||||| Sbjct: 1041 cagccaagctcttcctccagtcatgtaagatcacaatttattggcatggggttttcacca 1100 Query: 356 gtgctggttgacagaatgcttcggaaaca 384 || |||||||||| |||||| |||||| Sbjct: 1101 atgttggttgacagggtgcttcagaaaca 1129
>gb|AC118288.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077L08, complete sequence Length = 115640 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 296 cagccaagctcttcatccagttatttaaggtcacattttattggtatgggattttcacca 355 |||||||||||||| |||||| || |||| ||||| |||||||| ||||| ||||||||| Sbjct: 86938 cagccaagctcttcctccagtcatgtaagatcacaatttattggcatggggttttcacca 86997 Query: 356 gtgctggttgacagaatgcttcggaaaca 384 || |||||||||| |||||| |||||| Sbjct: 86998 atgttggttgacagggtgcttcagaaaca 87026
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 296 cagccaagctcttcatccagttatttaaggtcacattttattggtatgggattttcacca 355 |||||||||||||| |||||| || |||| ||||| |||||||| ||||| ||||||||| Sbjct: 1908164 cagccaagctcttcctccagtcatgtaagatcacaatttattggcatggggttttcacca 1908223 Query: 356 gtgctggttgacagaatgcttcggaaaca 384 || |||||||||| |||||| |||||| Sbjct: 1908224 atgttggttgacagggtgcttcagaaaca 1908252
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 182 atcgagatggtcaagatcgaag 203 |||||||||||||||||||||| Sbjct: 2101359 atcgagatggtcaagatcgaag 2101380
>gb|AC169036.3| Mus musculus BAC clone RP23-382O15 from chromosome 5, complete sequence Length = 215306 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 tcactccgctcaccactccac 130 ||||||||||||||||||||| Sbjct: 78664 tcactccgctcaccactccac 78684
>gb|AC114605.11| Mus musculus chromosome 5, clone RP23-373H20, complete sequence Length = 163969 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 tcactccgctcaccactccac 130 ||||||||||||||||||||| Sbjct: 163124 tcactccgctcaccactccac 163104
>gb|AC151778.1| Ornithorhynchus anatinus chromosome UNK clone OABb-238A1, complete sequence Length = 168798 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 acctcacttcacttcactcc 116 |||||||||||||||||||| Sbjct: 11046 acctcacttcacttcactcc 11065
>gb|AC137121.9| Mus musculus chromosome 5, clone RP23-286M22, complete sequence Length = 181548 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tgggattttcaccagtgctg 361 |||||||||||||||||||| Sbjct: 146647 tgggattttcaccagtgctg 146628
>gb|AC121906.3| Mus musculus BAC clone RP24-176E21 from chromosome 3, complete sequence Length = 171059 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 aattctgggtctgaatcgtc 453 |||||||||||||||||||| Sbjct: 112285 aattctgggtctgaatcgtc 112266
>gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b06, complete sequence Length = 112592 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 aatgcttcggaaacatggtg 389 |||||||||||||||||||| Sbjct: 91543 aatgcttcggaaacatggtg 91562
>emb|AL590138.7| Human DNA sequence from clone RP11-243A2 on chromosome 1 Contains part of the PLXNA2 gene for plexin A2, complete sequence Length = 164057 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 atattggagtcacttttatc 426 |||||||||||||||||||| Sbjct: 24305 atattggagtcacttttatc 24324
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 cgccgccgacccgccgcagc 239 |||||||||||||||||||| Sbjct: 114144 cgccgccgacccgccgcagc 114163
>gb|AE012546.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 454 of 460 of the complete genome Length = 11417 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 aatccggctccggcgcccgc 261 |||||||||||||||||||| Sbjct: 2160 aatccggctccggcgcccgc 2141
>dbj|AB226253.1| Aspergillus oryzae cDNA, contig sequence: AoEST3112 Length = 1144 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ctgcccggctccggccgacc 93 |||||||||||||||||||| Sbjct: 63 ctgcccggctccggccgacc 82
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ctgcccggctccggccgacc 93 |||||||||||||||||||| Sbjct: 1585382 ctgcccggctccggccgacc 1585363
>gb|AC099023.1| Drosophila melanogaster, chromosome 2R, region 56X-57A, BAC clone BACR48L22, complete sequence Length = 180814 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 tcacttcacttcactccgct 119 |||||||||||||||||||| Sbjct: 4393 tcacttcacttcactccgct 4374
>gb|AC011351.5| Homo sapiens chromosome 5 clone CTC-325N22, complete sequence Length = 176804 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 404 gctatattggagtcacttttatct 427 |||||||||||| ||||||||||| Sbjct: 92492 gctatattggagacacttttatct 92515
>gb|AC123664.15| Mus musculus chromosome 5, clone RP23-224P16, complete sequence Length = 226777 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 tgggattttcaccagtgctg 361 |||||||||||||||||||| Sbjct: 202490 tgggattttcaccagtgctg 202509
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 ctcacttcacttcactccgctcac 122 ||||||||||||||||| |||||| Sbjct: 60303 ctcacttcacttcactcggctcac 60326
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 aatccggctccggcgcccgc 261 |||||||||||||||||||| Sbjct: 5080171 aatccggctccggcgcccgc 5080152
>gb|AC091635.1|AC091635 Drosophila melanogaster, chromosome 2R, region 56F-57A, BAC clone BACR10H12, complete sequence Length = 166168 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tcacttcacttcactccgct 119 |||||||||||||||||||| Sbjct: 29188 tcacttcacttcactccgct 29207
>gb|AY108151.1| Zea mays PCO069344 mRNA sequence Length = 352 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 gtcgccgccgacccgccgcagccc 241 ||||||||| |||||||||||||| Sbjct: 44 gtcgccgcccacccgccgcagccc 21
>gb|AY104403.1| Zea mays PCO068697 mRNA sequence Length = 2273 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 aatgcttcggaaacatggtg 389 |||||||||||||||||||| Sbjct: 90 aatgcttcggaaacatggtg 109
>gb|AE003792.3| Drosophila melanogaster chromosome 2R, section 58 of 73 of the complete sequence Length = 256764 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tcacttcacttcactccgct 119 |||||||||||||||||||| Sbjct: 84117 tcacttcacttcactccgct 84136
>gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, complete sequence Length = 197546 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 aggtcacattttattggtat 342 |||||||||||||||||||| Sbjct: 113436 aggtcacattttattggtat 113455
>gb|AC004290.1|AC004290 Drosophila melanogaster DNA sequence (P1 DS04106 (D172)), complete sequence Length = 84653 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tcacttcacttcactccgct 119 |||||||||||||||||||| Sbjct: 63206 tcacttcacttcactccgct 63225 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,478,521 Number of Sequences: 3902068 Number of extensions: 3478521 Number of successful extensions: 65187 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65057 Number of HSP's gapped (non-prelim): 130 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)