ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdc05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK067302.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
2dbj|AK063482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
3gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
4gb|AC118288.2| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
6gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 44 0.40
7gb|AC169036.3| Mus musculus BAC clone RP23-382O15 from chromosom... 42 1.6
8gb|AC114605.11| Mus musculus chromosome 5, clone RP23-373H20, co... 42 1.6
9gb|AC151778.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 6.2
10gb|AC137121.9| Mus musculus chromosome 5, clone RP23-286M22, com... 40 6.2
11gb|AC121906.3| Mus musculus BAC clone RP24-176E21 from chromosom... 40 6.2
12gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b0... 40 6.2
13emb|AL590138.7| Human DNA sequence from clone RP11-243A2 on chro... 40 6.2
14emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 40 6.2
15gb|AE012546.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.2
16dbj|AB226253.1| Aspergillus oryzae cDNA, contig sequence: AoEST3112 40 6.2
17dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 6.2
18gb|AC099023.1| Drosophila melanogaster, chromosome 2R, region 56... 40 6.2
19gb|AC011351.5| Homo sapiens chromosome 5 clone CTC-325N22, compl... 40 6.2
20gb|AC123664.15| Mus musculus chromosome 5, clone RP23-224P16, co... 40 6.2
21gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A1... 40 6.2
22gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.2
23gb|AC091635.1|AC091635 Drosophila melanogaster, chromosome 2R, r... 40 6.2
24gb|AY108151.1| Zea mays PCO069344 mRNA sequence 40 6.2
25gb|AY104403.1| Zea mays PCO068697 mRNA sequence 40 6.2
26gb|AE003792.3| Drosophila melanogaster chromosome 2R, section 58... 40 6.2
27gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, co... 40 6.2
28gb|AC004290.1|AC004290 Drosophila melanogaster DNA sequence (P1 ... 40 6.2

>dbj|AK067302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102H14, full
           insert sequence
          Length = 3100

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Plus

                                                                       
Query: 296 cagccaagctcttcatccagttatttaaggtcacattttattggtatgggattttcacca 355
           |||||||||||||| |||||| || |||| ||||| |||||||| ||||| |||||||||
Sbjct: 598 cagccaagctcttcctccagtcatgtaagatcacaatttattggcatggggttttcacca 657

                                              
Query: 356 gtgctggttgacagaatgcttcggaaacatggtga 390
            || ||||||||||  |||||| |||||| |||||
Sbjct: 658 atgttggttgacagggtgcttcagaaacacggtga 692



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>dbj|AK063482.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B11, full
           insert sequence
          Length = 2694

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Plus

                                                                       
Query: 296 cagccaagctcttcatccagttatttaaggtcacattttattggtatgggattttcacca 355
           |||||||||||||| |||||| || |||| ||||| |||||||| ||||| |||||||||
Sbjct: 597 cagccaagctcttcctccagtcatgtaagatcacaatttattggcatggggttttcacca 656

                                              
Query: 356 gtgctggttgacagaatgcttcggaaacatggtga 390
            || ||||||||||  |||||| |||||| |||||
Sbjct: 657 atgttggttgacagggtgcttcagaaacacggtga 691



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>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07,
            complete sequence
          Length = 151399

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 296  cagccaagctcttcatccagttatttaaggtcacattttattggtatgggattttcacca 355
            |||||||||||||| |||||| || |||| ||||| |||||||| ||||| |||||||||
Sbjct: 1041 cagccaagctcttcctccagtcatgtaagatcacaatttattggcatggggttttcacca 1100

                                         
Query: 356  gtgctggttgacagaatgcttcggaaaca 384
             || ||||||||||  |||||| ||||||
Sbjct: 1101 atgttggttgacagggtgcttcagaaaca 1129



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>gb|AC118288.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0077L08, complete sequence
          Length = 115640

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                         
Query: 296   cagccaagctcttcatccagttatttaaggtcacattttattggtatgggattttcacca 355
             |||||||||||||| |||||| || |||| ||||| |||||||| ||||| |||||||||
Sbjct: 86938 cagccaagctcttcctccagtcatgtaagatcacaatttattggcatggggttttcacca 86997

                                          
Query: 356   gtgctggttgacagaatgcttcggaaaca 384
              || ||||||||||  |||||| ||||||
Sbjct: 86998 atgttggttgacagggtgcttcagaaaca 87026



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                           
Query: 296     cagccaagctcttcatccagttatttaaggtcacattttattggtatgggattttcacca 355
               |||||||||||||| |||||| || |||| ||||| |||||||| ||||| |||||||||
Sbjct: 1908164 cagccaagctcttcctccagtcatgtaagatcacaatttattggcatggggttttcacca 1908223

                                            
Query: 356     gtgctggttgacagaatgcttcggaaaca 384
                || ||||||||||  |||||| ||||||
Sbjct: 1908224 atgttggttgacagggtgcttcagaaaca 1908252



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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 182     atcgagatggtcaagatcgaag 203
               ||||||||||||||||||||||
Sbjct: 2101359 atcgagatggtcaagatcgaag 2101380



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>gb|AC169036.3| Mus musculus BAC clone RP23-382O15 from chromosome 5, complete sequence
          Length = 215306

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   tcactccgctcaccactccac 130
             |||||||||||||||||||||
Sbjct: 78664 tcactccgctcaccactccac 78684



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>gb|AC114605.11| Mus musculus chromosome 5, clone RP23-373H20, complete sequence
          Length = 163969

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 110    tcactccgctcaccactccac 130
              |||||||||||||||||||||
Sbjct: 163124 tcactccgctcaccactccac 163104



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>gb|AC151778.1| Ornithorhynchus anatinus chromosome UNK clone OABb-238A1, complete
             sequence
          Length = 168798

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    acctcacttcacttcactcc 116
             ||||||||||||||||||||
Sbjct: 11046 acctcacttcacttcactcc 11065



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>gb|AC137121.9| Mus musculus chromosome 5, clone RP23-286M22, complete sequence
          Length = 181548

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    tgggattttcaccagtgctg 361
              ||||||||||||||||||||
Sbjct: 146647 tgggattttcaccagtgctg 146628



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>gb|AC121906.3| Mus musculus BAC clone RP24-176E21 from chromosome 3, complete sequence
          Length = 171059

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 434    aattctgggtctgaatcgtc 453
              ||||||||||||||||||||
Sbjct: 112285 aattctgggtctgaatcgtc 112266



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>gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b06, complete sequence
          Length = 112592

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   aatgcttcggaaacatggtg 389
             ||||||||||||||||||||
Sbjct: 91543 aatgcttcggaaacatggtg 91562



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>emb|AL590138.7| Human DNA sequence from clone RP11-243A2 on chromosome 1 Contains part
             of the PLXNA2 gene for plexin A2, complete sequence
          Length = 164057

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 407   atattggagtcacttttatc 426
             ||||||||||||||||||||
Sbjct: 24305 atattggagtcacttttatc 24324



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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    cgccgccgacccgccgcagc 239
              ||||||||||||||||||||
Sbjct: 114144 cgccgccgacccgccgcagc 114163



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>gb|AE012546.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 454
            of 460 of the complete genome
          Length = 11417

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  aatccggctccggcgcccgc 261
            ||||||||||||||||||||
Sbjct: 2160 aatccggctccggcgcccgc 2141



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>dbj|AB226253.1| Aspergillus oryzae cDNA, contig sequence: AoEST3112
          Length = 1144

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 74 ctgcccggctccggccgacc 93
          ||||||||||||||||||||
Sbjct: 63 ctgcccggctccggccgacc 82



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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 74      ctgcccggctccggccgacc 93
               ||||||||||||||||||||
Sbjct: 1585382 ctgcccggctccggccgacc 1585363



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>gb|AC099023.1| Drosophila melanogaster, chromosome 2R, region 56X-57A, BAC clone
            BACR48L22, complete sequence
          Length = 180814

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tcacttcacttcactccgct 119
            ||||||||||||||||||||
Sbjct: 4393 tcacttcacttcactccgct 4374



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>gb|AC011351.5| Homo sapiens chromosome 5 clone CTC-325N22, complete sequence
          Length = 176804

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 404   gctatattggagtcacttttatct 427
             |||||||||||| |||||||||||
Sbjct: 92492 gctatattggagacacttttatct 92515



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>gb|AC123664.15| Mus musculus chromosome 5, clone RP23-224P16, complete sequence
          Length = 226777

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    tgggattttcaccagtgctg 361
              ||||||||||||||||||||
Sbjct: 202490 tgggattttcaccagtgctg 202509



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>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence
          Length = 133625

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    ctcacttcacttcactccgctcac 122
             ||||||||||||||||| ||||||
Sbjct: 60303 ctcacttcacttcactcggctcac 60326



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 242     aatccggctccggcgcccgc 261
               ||||||||||||||||||||
Sbjct: 5080171 aatccggctccggcgcccgc 5080152



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>gb|AC091635.1|AC091635 Drosophila melanogaster, chromosome 2R, region 56F-57A, BAC clone
             BACR10H12, complete sequence
          Length = 166168

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   tcacttcacttcactccgct 119
             ||||||||||||||||||||
Sbjct: 29188 tcacttcacttcactccgct 29207



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>gb|AY108151.1| Zea mays PCO069344 mRNA sequence
          Length = 352

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 218 gtcgccgccgacccgccgcagccc 241
           ||||||||| ||||||||||||||
Sbjct: 44  gtcgccgcccacccgccgcagccc 21



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>gb|AY104403.1| Zea mays PCO068697 mRNA sequence
          Length = 2273

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 aatgcttcggaaacatggtg 389
           ||||||||||||||||||||
Sbjct: 90  aatgcttcggaaacatggtg 109



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>gb|AE003792.3| Drosophila melanogaster chromosome 2R, section 58 of 73 of the complete
             sequence
          Length = 256764

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   tcacttcacttcactccgct 119
             ||||||||||||||||||||
Sbjct: 84117 tcacttcacttcactccgct 84136



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>gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, complete sequence
          Length = 197546

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    aggtcacattttattggtat 342
              ||||||||||||||||||||
Sbjct: 113436 aggtcacattttattggtat 113455



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>gb|AC004290.1|AC004290 Drosophila melanogaster DNA sequence (P1 DS04106 (D172)), complete
             sequence
          Length = 84653

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   tcacttcacttcactccgct 119
             ||||||||||||||||||||
Sbjct: 63206 tcacttcacttcactccgct 63225


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,478,521
Number of Sequences: 3902068
Number of extensions: 3478521
Number of successful extensions: 65187
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65057
Number of HSP's gapped (non-prelim): 130
length of query: 459
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 437
effective length of database: 17,147,199,772
effective search space: 7493326300364
effective search space used: 7493326300364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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