Clone Information

BLAST Search Result

Clone Name	basdc10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3	172	7e-43
2	PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neura...	86	8e-17
3	PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Bra...	86	8e-17
4	PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neu...	86	8e-17
5	PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB) ...	85	1e-16
6	PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB) ...	84	2e-16
7	PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)	84	2e-16
8	PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB...	84	2e-16
9	PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB...	84	2e-16
10	ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)	82	9e-16
11	ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)	82	1e-15
12	ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)	82	1e-15
13	PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2	72	9e-13
14	HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (...	67	3e-11
15	HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (...	67	3e-11
16	HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like	67	3e-11
17	PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1	67	4e-11
18	HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-l...	65	1e-10
19	MATR3_MOUSE (Q8K310) Matrin-3	49	1e-05
20	MATR3_HUMAN (P43243) Matrin-3	49	1e-05
21	MATR3_RAT (P43244) Matrin-3 (Nuclear scaffold protein P130/MAT3)	47	2e-05
22	IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 s...	37	0.026
23	IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 s...	37	0.026
24	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	37	0.026
25	PTPA1_ASPFU (Q4WMU5) Serine/threonine-protein phosphatase 2A act...	37	0.026
26	ZN638_MOUSE (Q61464) Zinc finger protein 638 (Nuclear protein 22...	36	0.057
27	ZN638_HUMAN (Q14966) Zinc finger protein 638 (Nuclear protein 22...	34	0.22
28	NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Mul...	34	0.28
29	TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-d...	32	0.82
30	FOXH1_HUMAN (O75593) Forkhead box protein H1 (Forkhead activin s...	32	1.1
31	GCSP_ANASP (Q8YNF9) Glycine dehydrogenase [decarboxylating] (EC ...	32	1.4
32	MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote...	32	1.4
33	SPEN_DROME (Q8SX83) Protein split ends	32	1.4
34	PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein	32	1.4
35	MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote...	31	1.8
36	CENG3_HUMAN (Q96P47) Centaurin-gamma 3 (ARF-GAP with GTP-binding...	31	1.8
37	PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein	31	2.4
38	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	31	2.4
39	SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precurs...	31	2.4
40	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	30	4.1
41	SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)	30	4.1
42	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	30	4.1
43	IF2_STRAW (Q82K53) Translation initiation factor IF-2	30	4.1
44	3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)	30	5.3
45	SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)	29	7.0
46	UCRI3_TOBAC (P51133) Ubiquinol-cytochrome c reductase iron-sulfu...	29	7.0
47	DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp...	29	9.1
48	KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3...	29	9.1
49	KATL1_RAT (Q5XIK7) Katanin p60 ATPase-containing subunit A-like ...	29	9.1
50	KATL1_MOUSE (Q8K0T4) Katanin p60 ATPase-containing subunit A-lik...	29	9.1
51	ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E...	29	9.1
52	UCRI5_TOBAC (P51135) Ubiquinol-cytochrome c reductase iron-sulfu...	29	9.1
53	DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp...	29	9.1
54	KATL1_HUMAN (Q9BW62) Katanin p60 ATPase-containing subunit A-lik...	29	9.1
55	DVL1_PANTR (Q5IS48) Segment polarity protein dishevelled homolog...	29	9.1
56	DVL1_HUMAN (O14640) Segment polarity protein dishevelled homolog...	29	9.1
57	DVL1L_HUMAN (P54792) Segment polarity protein dishevelled homolo...	29	9.1

>PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3|
          Length = 432

 Score =  172 bits (435), Expect = 7e-43
 Identities = 80/116 (68%), Positives = 104/116 (89%), Gaps = 1/116 (0%)
 Frame = +2

Query: 182 MAEPSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQY 361
           MAE S+V+H+RNVGHEISE DLLQ+ QPFG + K+VMLRAKNQAL+QM+D+SS++SA+Q+
Sbjct: 1   MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60

Query: 362 YTTIQPSVRGRNVYLQYSSHQELNT-DQSSHGRNPDQDEPNRILLVTVHHMLYPMT 526
           +T +QP++RGRNVY+Q+SSHQEL T +Q+ HGR   +DEPNRILLVT+HHMLYP+T
Sbjct: 61  FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGR---EDEPNRILLVTIHHMLYPIT 113



 Score = 38.9 bits (89), Expect = 0.009
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
 Frame = +2

Query: 71  FSIRPSLSPFLPLV*TLDXXXXXXXXSRRRVAVSGARMAEPSRVIHIRNVGHEISETDLL 250
           FS  P+++P      + D          R  A +      P+++IH+  +  +++E +++
Sbjct: 316 FSKHPNITPGTD---SHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVM 372

Query: 251 QVVQPFGAV--AKVVMLRAKNQALVQMEDLSSSISAI 355
             VQ  GAV   KV  +  K QALVQ E+   +  A+
Sbjct: 373 NHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEAL 409

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>PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neural|
           polypyrimidine tract-binding protein) (PTB-like protein)
          Length = 531

 Score = 85.5 bits (210), Expect = 8e-17
 Identities = 35/89 (39%), Positives = 63/89 (70%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 370
           PSRV+HIR +  E++ET+++ +  PFG V  ++ML+ KNQA +++    ++I+ + YY+ 
Sbjct: 57  PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116

Query: 371 IQPSVRGRNVYLQYSSHQELNTDQSSHGR 457
           + P +R + +Y+QYS+H+EL TD + + R
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQR 145

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>PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Brain-enriched|
           polypyrimidine tract-binding protein) (Brain-enriched
           PTB) (RRM-type RNA-binding protein brPTB) (Neural
           polypyrimidine tract-binding protein)
          Length = 531

 Score = 85.5 bits (210), Expect = 8e-17
 Identities = 35/89 (39%), Positives = 63/89 (70%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 370
           PSRV+HIR +  E++ET+++ +  PFG V  ++ML+ KNQA +++    ++I+ + YY+ 
Sbjct: 57  PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116

Query: 371 IQPSVRGRNVYLQYSSHQELNTDQSSHGR 457
           + P +R + +Y+QYS+H+EL TD + + R
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQR 145

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>PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neurally-enriched|
           homolog of PTB) (Neural polypyrimidine tract-binding
           protein) (PTB-like protein)
          Length = 531

 Score = 85.5 bits (210), Expect = 8e-17
 Identities = 35/89 (39%), Positives = 63/89 (70%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 370
           PSRV+HIR +  E++ET+++ +  PFG V  ++ML+ KNQA +++    ++I+ + YY+ 
Sbjct: 57  PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116

Query: 371 IQPSVRGRNVYLQYSSHQELNTDQSSHGR 457
           + P +R + +Y+QYS+H+EL TD + + R
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQR 145

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>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 35/85 (41%), Positives = 61/85 (71%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 370
           PSRVIHIR +  +++E +++ +  PFG V  ++ML+ KNQA ++M    ++ + + YYT+
Sbjct: 57  PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116

Query: 371 IQPSVRGRNVYLQYSSHQELNTDQS 445
           + P +RG+ +Y+Q+S+H+EL TD S
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSS 141



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQ--ALVQMEDLSSSISAI 355
           PS  +H+ N+   ISE DL  +    G + K      K++  AL+QM  +  +I A+
Sbjct: 478 PSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQAL 534

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>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (Pyrimidine-binding protein) (PYBP)
          Length = 555

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 34/85 (40%), Positives = 61/85 (71%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 370
           PSRVIH+R +  +++E +++ +  PFG V  ++ML+ KNQA ++M    ++ + + YYT+
Sbjct: 56  PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115

Query: 371 IQPSVRGRNVYLQYSSHQELNTDQS 445
           + P +RG+ +Y+Q+S+H+EL TD S
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSS 140



 Score = 32.0 bits (71), Expect = 1.1
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQ--ALVQMEDLSSSISAI 355
           PS  +H+ N+   +SE DL  +    G V K      K++  AL+QM  +  ++ A+
Sbjct: 476 PSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQAL 532

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>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)|
          Length = 531

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 35/85 (41%), Positives = 61/85 (71%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 370
           PSRVIHIR +  +++E +++ +  PFG V  ++ML+ KNQA ++M    ++ + + YYT+
Sbjct: 57  PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTS 116

Query: 371 IQPSVRGRNVYLQYSSHQELNTDQS 445
           + P +RG+ +Y+Q+S+H+EL TD S
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSS 141



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQ--ALVQMEDLSSSISAI 355
           PS  +H+ N+   ISE DL  +    G + K      K++  AL+QM  +  +I A+
Sbjct: 452 PSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQAL 508

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>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 527

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 34/85 (40%), Positives = 61/85 (71%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 370
           PSRVIH+R +  +++E +++ +  PFG V  ++ML+ KNQA ++M    ++ + + YYT+
Sbjct: 56  PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115

Query: 371 IQPSVRGRNVYLQYSSHQELNTDQS 445
           + P +RG+ +Y+Q+S+H+EL TD S
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSS 140



 Score = 32.0 bits (71), Expect = 1.1
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQ--ALVQMEDLSSSISAI 355
           PS  +H+ N+   +SE DL  +    G V K      K++  AL+QM  +  ++ A+
Sbjct: 448 PSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQAL 504

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>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (57 kDa RNA-binding protein PPTB-1)
          Length = 531

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 35/85 (41%), Positives = 61/85 (71%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 370
           PSRVIHIR +  +++E +++ +  PFG V  ++ML+ KNQA ++M    ++ + + YYT+
Sbjct: 57  PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116

Query: 371 IQPSVRGRNVYLQYSSHQELNTDQS 445
           + P +RG+ +Y+Q+S+H+EL TD S
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSS 141



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQ--ALVQMEDLSSSISAI 355
           PS  +H+ N+   +SE DL  +    G V K      K++  AL+QM  +  ++ A+
Sbjct: 452 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQAL 508

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>ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)|
          Length = 521

 Score = 82.0 bits (201), Expect = 9e-16
 Identities = 33/83 (39%), Positives = 59/83 (71%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 370
           PSRV+H+R +  +++E +++ +  PFG V  ++ML+ K+QA ++M    ++++ + YYT 
Sbjct: 26  PSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTP 85

Query: 371 IQPSVRGRNVYLQYSSHQELNTD 439
           I P +R + VY+QYS+H+EL TD
Sbjct: 86  ITPHLRSQPVYIQYSNHRELKTD 108

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>ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 33/83 (39%), Positives = 59/83 (71%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 370
           PSRV+H+R +  +++E +++ +  PFG V  ++ML+ K+QA ++M    ++++ I YYT 
Sbjct: 28  PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTP 87

Query: 371 IQPSVRGRNVYLQYSSHQELNTD 439
           + P +R + VY+QYS+H+EL TD
Sbjct: 88  VTPHLRSQPVYIQYSNHRELKTD 110

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>ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 33/83 (39%), Positives = 59/83 (71%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 370
           PSRV+H+R +  +++E +++ +  PFG V  ++ML+ K+QA ++M    ++++ I YYT 
Sbjct: 28  PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTP 87

Query: 371 IQPSVRGRNVYLQYSSHQELNTD 439
           + P +R + VY+QYS+H+EL TD
Sbjct: 88  VTPHLRSQPVYIQYSNHRELKTD 110

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>PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2|
          Length = 429

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 41/108 (37%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAV--AKVVMLRAKNQALVQMEDLSSSISAIQYY 364
           PS+V+H+RN+  E +E +L+++ +PFG V   K  +   +NQA ++ EDL+ +I  I YY
Sbjct: 16  PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYY 75

Query: 365 -TTIQPS-VRGRNVYLQYSSHQELNTDQSSHGRNPDQDEPNRILLVTV 502
            ++ +P+ VRG+ VYLQYS+ QE+  ++++       D    +LLVT+
Sbjct: 76  ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT------ADVVGNVLLVTI 117

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>HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 558

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 36/111 (32%), Positives = 63/111 (56%)
 Frame = +2

Query: 194 SRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTI 373
           S V+HIR +   + E DL++ +Q FG ++ VV++  K QALV+ ED+  + +A+ Y    
Sbjct: 70  SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN 129

Query: 374 QPSVRGRNVYLQYSSHQELNTDQSSHGRNPDQDEPNRILLVTVHHMLYPMT 526
           Q  + G   ++ YS+ Q++    S  G + D    N +LL T+ + +Y +T
Sbjct: 130 QIYIAGHPAFVNYSTSQKI----SRPGDSDDSRSVNSVLLFTILNPIYSIT 176

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>HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 555

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 36/111 (32%), Positives = 63/111 (56%)
 Frame = +2

Query: 194 SRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTI 373
           S V+HIR +   + E DL++ +Q FG ++ VV++  K QALV+ ED+  + +A+ Y    
Sbjct: 67  SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN 126

Query: 374 QPSVRGRNVYLQYSSHQELNTDQSSHGRNPDQDEPNRILLVTVHHMLYPMT 526
           Q  + G   ++ YS+ Q++    S  G + D    N +LL T+ + +Y +T
Sbjct: 127 QIYIAGHPAFVNYSTSQKI----SRPGDSDDSRSVNSVLLFTILNPIYSIT 173

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>HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like|
          Length = 591

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
 Frame = +2

Query: 194 SRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTI 373
           S V+H+R +   + E DL++ ++ FG +  V+M+  K QALV+ E++ S+   + +   +
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 183

Query: 374 QPSVRGRNVYLQYSSHQEL----NTDQSSHGRNPDQDEPNRILLVTVHHMLYPMT 526
              + G+  +  YS+ + +    NTD  S G        N++LL+++ + LYP+T
Sbjct: 184 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGG--------NKVLLLSIQNPLYPIT 230

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>PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1|
          Length = 399

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 39/107 (36%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
 Frame = +2

Query: 191 PSRVIHIRNVGHEISETDLLQVVQPFGAV--AKVVMLRAKNQALVQMEDLSSSISAIQYY 364
           PS+V+H+RN+  E  E +L+ + + FG +   K  +   +NQA V+  DL+ +IS + YY
Sbjct: 15  PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74

Query: 365 -TTIQPS-VRGRNVYLQYSSHQELNTDQSSHGRNPDQDEPNRILLVT 499
            ++ +P+ +RG+ VY+QYS+  E+  +QS        D P  +LLVT
Sbjct: 75  ASSSEPAQIRGKTVYIQYSNRHEIVNNQS------PGDVPGNVLLVT 115

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>HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-like (Stromal|
           RNA-regulating factor) (BLOCK24 protein)
          Length = 542

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
 Frame = +2

Query: 194 SRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTI 373
           S V+H+R +   + E DL++ ++ FG +  V+M+  K QALV+ E++ S+   + +    
Sbjct: 75  SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134

Query: 374 QPSVRGRNVYLQYSSHQEL----NTDQSSHGRNPDQDEPNRILLVTVHHMLYPMT 526
              + G+  +  YS+ + +    NTD  S G        N++LL+++ + LYP+T
Sbjct: 135 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGG--------NKVLLLSIQNPLYPIT 181

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>MATR3_MOUSE (Q8K310) Matrin-3|
          Length = 846

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
 Frame = +2

Query: 188 EPSRVIHIRNVGHEIS-ETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYY 364
           E SRV+HI +     +    LLQ+V+PFG ++  ++L   N+A ++M     + +A+ YY
Sbjct: 395 ETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYY 454

Query: 365 TTIQPSVRGRNVYLQYSSHQELNTDQSSHGRNPDQDEPNRILLVTVHHM 511
           TT    V G+ V +  S  Q+    +   G+ PDQ    +  L  V H+
Sbjct: 455 TTTPALVFGKPVRVHLS--QKYKRIKKPEGK-PDQKFDQKQELGRVIHL 500



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 17/59 (28%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = +2

Query: 188 EPSRVIHIRNVGHE-ISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQY 361
           E  RVIH+ N+ H   S++ +L++ +P+G +   +++R K+QA ++ME    +++ + +
Sbjct: 493 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDH 551

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>MATR3_HUMAN (P43243) Matrin-3|
          Length = 847

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
 Frame = +2

Query: 188 EPSRVIHIRNVGHEIS-ETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYY 364
           E SRV+HI +     +    LLQ+V+PFG ++  ++L   N+A ++M     + +A+ YY
Sbjct: 395 ETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYY 454

Query: 365 TTIQPSVRGRNVYLQYSSHQELNTDQSSHGRNPDQDEPNRILLVTVHHM 511
           TT    V G+ V +  S  Q+    +   G+ PDQ    +  L  V H+
Sbjct: 455 TTTPALVFGKPVRVHLS--QKYKRIKKPEGK-PDQKFDQKQELGRVIHL 500



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 17/59 (28%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = +2

Query: 188 EPSRVIHIRNVGHE-ISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQY 361
           E  RVIH+ N+ H   S++ +L++ +P+G +   +++R K+QA ++ME    +++ + +
Sbjct: 493 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDH 551

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>MATR3_RAT (P43244) Matrin-3 (Nuclear scaffold protein P130/MAT3)|
          Length = 845

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
 Frame = +2

Query: 188 EPSRVIHIRNVGHEIS-ETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYY 364
           E SRV+HI +     +    LLQ+V+PFG ++  ++L   N+A ++M     + +A+ YY
Sbjct: 395 ETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYY 454

Query: 365 TTIQPSVRGRNVYLQYSSHQELNTDQSSHGRNPDQDEPNRILLVTVHHM 511
           TT    V G+ V +  S  Q+    +   G+ PD+    +  L  V H+
Sbjct: 455 TTTPALVFGKPVRVHLS--QKYKRIKKPEGK-PDEKFDQKQELGRVIHL 500



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 17/59 (28%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = +2

Query: 188 EPSRVIHIRNVGHE-ISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQY 361
           E  RVIH+ N+ H   S++ +L++ +P+G +   +++R K+QA ++ME    +++ + +
Sbjct: 493 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDH 551

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>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (Eif3p42) (eIF3g)
          Length = 320

 Score = 37.4 bits (85), Expect = 0.026
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = +2

Query: 149 SRRRVAVSGARMAEPSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAK 304
           SRR  ++   R A+ +  I + N+  +  ETDL ++ +PFG+++++ + + K
Sbjct: 223 SRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK 274

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>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (eIF3g)
          Length = 320

 Score = 37.4 bits (85), Expect = 0.026
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = +2

Query: 149 SRRRVAVSGARMAEPSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAK 304
           SRR  ++   R A+ +  I + N+  +  ETDL ++ +PFG+++++ + + K
Sbjct: 223 SRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK 274

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 37.4 bits (85), Expect = 0.026
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -2

Query: 332 GPPSGQG-----PDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPPT 168
           GPP+G       P    A   P +P   AAPP  GQ R+S     G G+P  ARP   P+
Sbjct: 497 GPPAGSPLPQRLPSPTSA---PQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPS 553

Query: 167 QQ 162
            Q
Sbjct: 554 PQ 555

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>PTPA1_ASPFU (Q4WMU5) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 473

 Score = 37.4 bits (85), Expect = 0.026
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 329 PPSGQGPDSWHAA*RPWRPRQTAAPP-GAGQSRRSHARRSGCGSPWRARPSLPPTQQL 159
           P +GQ P S   A  PW     AAPP GAG +    A+R GC +P +   SLP T +L
Sbjct: 383 PSAGQTPPSGTRA--PWATATQAAPPAGAGTAAPWAAKRDGC-TPGKPPTSLPDTSRL 437

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>ZN638_MOUSE (Q61464) Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger|
           matrin-like protein)
          Length = 1960

 Score = 36.2 bits (82), Expect = 0.057
 Identities = 15/56 (26%), Positives = 35/56 (62%)
 Frame = +2

Query: 233 SETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTIQPSVRGRNV 400
           +E D+ +   PFG ++ V+++  +N+A ++ME   +  S ++Y  T+   ++G++V
Sbjct: 689 TEEDIRKAFLPFGKISDVLLVPCRNEAYLEMELRKAVTSIMKYIETMPLVIKGKSV 744

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>ZN638_HUMAN (Q14966) Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger|
           matrin-like protein) (Cutaneous T-cell
           lymphoma-associated antigen se33-1) (CTCL tumor antigen
           se33-1)
          Length = 1978

 Score = 34.3 bits (77), Expect = 0.22
 Identities = 15/56 (26%), Positives = 35/56 (62%)
 Frame = +2

Query: 233 SETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTIQPSVRGRNV 400
           +E D+ ++ QPFG V  V+++  + +A ++ME   +  + ++Y  T   +++G++V
Sbjct: 689 TEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTPLTIKGKSV 744

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>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy|
           suppressor of sporulation protein msa2)
          Length = 529

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 16/69 (23%), Positives = 40/69 (57%)
 Frame = +2

Query: 197 RVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTIQ 376
           R + + N+ + I+E ++ + ++PFG + ++ ++  +N A V   +++++I A+Q    + 
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQ-ELPLN 264

Query: 377 PSVRGRNVY 403
           P    R +Y
Sbjct: 265 PKWSKRRIY 273

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>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau|
            kinase)
          Length = 1321

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
 Frame = -2

Query: 344  LRKKGPPS-GQGPDSWHAA*RPWRPRQTAAPPGAGQSRRSHA--------RRSGCGSPWR 192
            LR K PP  G GP    A  RP  PR    P     +R + A        RR       +
Sbjct: 1206 LRPKQPPGRGLGPGRAQAGARPPAPRSPRLPASTSAARNASASPRSQSLSRRESPSPSHQ 1265

Query: 191  ARPSLPP 171
            ARP +PP
Sbjct: 1266 ARPGVPP 1272

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>FOXH1_HUMAN (O75593) Forkhead box protein H1 (Forkhead activin signal|
           transducer 1) (Fast-1) (hFAST-1) (Forkhead activin
           signal transducer 2) (Fast-2)
          Length = 365

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = -2

Query: 314 GPDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPP 171
           GP   H   RP+RP     PP  G S +S    SG G+PW   P L P
Sbjct: 145 GPYVLHG--RPYRPPSPPPPPSEGFSIKSLLGGSGEGAPW---PGLAP 187

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>GCSP_ANASP (Q8YNF9) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 983

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +2

Query: 266 FGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTIQPSVRGRNV------YLQYSSHQ 424
           + A+AK+  + +KNQ          S   + YY TI PSV GRN+      Y  Y+ +Q
Sbjct: 85  YAALAKLKQIASKNQVF-------RSYIGMGYYDTITPSVIGRNILENPGWYTAYTPYQ 136

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>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = +2

Query: 197 RVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISA 352
           RVI ++N     +  +L ++  PFG + +++M  A   A+VQ  D++S  SA
Sbjct: 512 RVILVKNFPFGTTREELGELFVPFGKLERLLMPPAGTIAIVQFRDIASGRSA 563

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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
 Frame = +2

Query: 191  PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQ---- 358
            P+  + I  V  ++SE+ L      FGAV KV + R +  ALV  + + ++ +A++    
Sbjct: 732  PTNCVWIDGVDEKVSESFLQSQFTRFGAVTKVSIDRNRQLALVLYDQVQNAQAAVKDMRG 791

Query: 359  ---YYTTIQPSVRGRNVYLQYSSHQELNTDQSSHGRNP 463
                   +Q     R     +   QE    QSS G NP
Sbjct: 792  TILRRKKLQVDFASRECQDAFYDKQEKQQQQSS-GSNP 828

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>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein|
          Length = 124

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 18/85 (21%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
 Frame = +2

Query: 188 EPSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVM---LRAKNQALVQMEDLSSSISAIQ 358
           E +RV+++RN+   I+  ++  +   +GA+ ++ +      K  A V  ED+  + +A+ 
Sbjct: 16  EVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVD 75

Query: 359 YYTTIQPSVRGRNVYLQYSSHQELN 433
           + +    +V  R + + Y  H +++
Sbjct: 76  HLSGF--NVANRYLIVLYYQHAKMS 98

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>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +2

Query: 197 RVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISA 352
           R+I ++N  H  +  +L ++  PFG + +++M  +   A++Q  D+ ++  A
Sbjct: 488 RIILVKNFPHGTTREELAELFLPFGKIERMLMPPSGTIAIIQYRDVPAARGA 539

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>CENG3_HUMAN (Q96P47) Centaurin-gamma 3 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 3)
           (AGAP-3) (MR1-interacting protein) (MRIP-1)
           (CRAM-associated GTPase) (CRAG)
          Length = 875

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 27/110 (24%), Positives = 39/110 (35%)
 Frame = -2

Query: 509 YDER*LREFGWVHPDQDSVHESSDQYSILDEKNTASTHFFPSR*VE**CSTGWR*LRKKG 330
           + ER L    W  P  + +H+ S   S  D+ + A+T                       
Sbjct: 474 HSERPLSSSAWAGPRPEGLHQRSCSVSSADQWSEATTSL--------------------- 512

Query: 329 PPSGQGPDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPS 180
           PP  Q P S  A      P+    PP    +R+ H R+   G+P    PS
Sbjct: 513 PPGMQHPASGPAEVLSSSPKLDP-PPSPHSNRKKHRRKKSTGTPRPDGPS 561

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>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein|
          Length = 138

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 18/76 (23%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
 Frame = +2

Query: 173 GARMA-EPSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVM---LRAKNQALVQMEDLSS 340
           GA++  E +R+++I+N+ ++I+  ++ ++   FGAV ++ +      +  A V  ED+  
Sbjct: 10  GAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFD 69

Query: 341 SISAIQYYTTIQPSVR 388
           + +A ++ +    S R
Sbjct: 70  AKTACEHLSGYNVSNR 85

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>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
 Frame = +2

Query: 176 ARMAEPSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLR-----AKNQALVQMEDLSS 340
           A++A+    + IRN+  + SE DL  V   FGAV +V + R      +    VQ ++L  
Sbjct: 106 AKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLE 165

Query: 341 SISAIQYYTTIQPSVRGRNVYLQYSSHQELNTDQSS 448
           +  A++        ++GR V + ++  ++   D  S
Sbjct: 166 AGKALKGMN--MKEIKGRTVAVDWAVAKDKYKDTQS 199

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>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL|
           receptor) (Scavenger receptor class F member 1)
          Length = 830

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 15/63 (23%)
 Frame = -2

Query: 341 RKKGPPS------GQGPDSWHAA*RPW-------RPRQTAAPPGAG--QSRRSHARRSGC 207
           RKKG P       GQ P+S   A  P        RP +     GAG   SRR+    SGC
Sbjct: 738 RKKGSPGLASGSVGQSPNSAPKAGLPGATGPMAVRPEEAVRGLGAGTESSRRAQEPVSGC 797

Query: 206 GSP 198
           GSP
Sbjct: 798 GSP 800

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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 332 GPPSG----QGPDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPPTQ 165
           GPP+G    Q   S  AA  P +    A P   GQ R+S     G G+P  ARP   P+ 
Sbjct: 497 GPPAGSPLPQRLPSPTAA--PQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSP 554

Query: 164 Q 162
           Q
Sbjct: 555 Q 555

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>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 284 PWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPPTQQ 162
           P +P   A P   GQ R+S     G G+P   RP   P+ Q
Sbjct: 515 PQQPASQATPMTQGQGRQSRPVAGGPGAPPATRPPASPSPQ 555

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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 332 GPPSG----QGPDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPPTQ 165
           GPP+G    Q   S  AA  P +    A P   GQ R+S     G G+P  ARP   P+ 
Sbjct: 495 GPPAGSPLPQRLPSPTAA--PQQSASQATPMTQGQGRQSRPVAGGPGAPPAARPPASPSP 552

Query: 164 Q 162
           Q
Sbjct: 553 Q 553

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>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +1

Query: 172 GGKDGRALQGDPHPERRA*DLRD*PAPGGAAVWRGRQGRHAACQESGPCPDGGP 333
           GG  G A    P P          P PGGA    G + + A  Q+  P P GGP
Sbjct: 222 GGSTGMARPQAPRPGGA-------PRPGGAGAPGGPRPQGAGGQDRAPRPQGGP 268

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>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)|
          Length = 701

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 287 RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPPTQ 165
           RP  P+ T +PP         ARR+   +P  ARP++PP Q
Sbjct: 541 RPASPKVTRSPPETAAPVEDMARRTKRPAP--ARPTMPPPQ 579

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>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = -2

Query: 332 GPPSGQG-----PDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPPT 168
           GPP+G       P    A   P +P   A P    Q R+S     G G+P  ARP   P+
Sbjct: 225 GPPAGSPLPQRLPSPTSA---PQQPVSQAQPLSQAQGRQSRPVAGGPGAPPAARPPASPS 281

Query: 167 QQ 162
            Q
Sbjct: 282 PQ 283

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>UCRI3_TOBAC (P51133) Ubiquinol-cytochrome c reductase iron-sulfur subunit 3,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 3) (RISP3)
          Length = 268

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +2

Query: 275 VAKVVMLRAKNQALVQMEDLSSSISAIQYYTTIQPSVRGRNVYLQYSSHQELNTDQS--- 445
           + K V+  + ++ ++ +  L   +S+I+  TT+    RG+ V+++  + +++N   S   
Sbjct: 127 ILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLANSVDL 186

Query: 446 SHGRNPDQD 472
              R+P QD
Sbjct: 187 GSLRDPQQD 195

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>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = +2

Query: 194 SRVIHIRNVGHEISETDLLQVVQPFGAVAKVVML------RAKNQALVQMEDLSSSISAI 355
           S  I +  + H   ET+L +  + FG V +VVM+      R +    +  ED  S   A+
Sbjct: 112 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171

Query: 356 QYY 364
             +
Sbjct: 172 NMH 174

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>KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin)
          Length = 516

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 311 PDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGS 201
           PD +    RPW+      PPG G++  + A  + CG+
Sbjct: 257 PDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT 293

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>KATL1_RAT (Q5XIK7) Katanin p60 ATPase-containing subunit A-like 1 (EC|
           3.6.4.3) (Katanin p60 subunit A-like 1) (p60
           katanin-like 1)
          Length = 488

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 311 PDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGS 201
           PD +    RPW+      PPG G++  + A  + CG+
Sbjct: 229 PDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT 265

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>KATL1_MOUSE (Q8K0T4) Katanin p60 ATPase-containing subunit A-like 1 (EC|
           3.6.4.3) (Katanin p60 subunit A-like 1) (p60
           katanin-like 1)
          Length = 488

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 311 PDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGS 201
           PD +    RPW+      PPG G++  + A  + CG+
Sbjct: 229 PDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT 265

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>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +2

Query: 203 IHIRNVGHEISETDLLQVVQPFGAVAKVVMLR------AKNQALVQMEDLSSSISAI 355
           I I N+G +  E  L Q+  PFGAV  V ++R       K    V M +   S  AI
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAI 302

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>UCRI5_TOBAC (P51135) Ubiquinol-cytochrome c reductase iron-sulfur subunit 5,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 5) (RISP5)
          Length = 268

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +2

Query: 275 VAKVVMLRAKNQALVQMEDLSSSISAIQYYTTIQPSVRGRNVYLQYSSHQELNTDQS--- 445
           + K V+  + ++ ++ +  L   +S+I+  TT+    RG+ V+++  + +++N   S   
Sbjct: 127 ILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDEDINLANSVDL 186

Query: 446 SHGRNPDQD 472
              R+P QD
Sbjct: 187 GSLRDPQQD 195

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>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = +2

Query: 194 SRVIHIRNVGHEISETDLLQVVQPFGAVAKVVML------RAKNQALVQMEDLSSSISAI 355
           S  I +  + H   ET+L +  + FG V +VVM+      R +    +  ED  S   A+
Sbjct: 112 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171

Query: 356 QYY 364
             +
Sbjct: 172 NMH 174

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>KATL1_HUMAN (Q9BW62) Katanin p60 ATPase-containing subunit A-like 1 (EC|
           3.6.4.3) (Katanin p60 subunit A-like 1) (p60
           katanin-like 1)
          Length = 490

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 311 PDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGS 201
           PD +    RPW+      PPG G++  + A  + CG+
Sbjct: 231 PDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT 267

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>DVL1_PANTR (Q5IS48) Segment polarity protein dishevelled homolog DVL-1|
           (Dishevelled-1) (DSH homolog 1)
          Length = 670

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 263 AAPPGAGQSRRSHARRSGCGSPWRARPS 180
           AA  G   S   H   SG GS WR RP+
Sbjct: 569 AAGAGGSGSESDHTAPSGVGSSWRERPA 596

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>DVL1_HUMAN (O14640) Segment polarity protein dishevelled homolog DVL-1|
           (Dishevelled-1) (DSH homolog 1)
          Length = 670

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 263 AAPPGAGQSRRSHARRSGCGSPWRARPS 180
           AA  G   S   H   SG GS WR RP+
Sbjct: 569 AAGAGGSGSESDHTAPSGVGSSWRERPA 596

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>DVL1L_HUMAN (P54792) Segment polarity protein dishevelled homolog DVL-1-like|
           (Dishevelled-1-like) (DSH homolog 1-like)
          Length = 670

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 263 AAPPGAGQSRRSHARRSGCGSPWRARPS 180
           AA  G   S   H   SG GS WR RP+
Sbjct: 569 AAGSGDSDSESDHTAPSGVGSSWRERPA 596


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,433,907
Number of Sequences: 219361
Number of extensions: 1598954
Number of successful extensions: 4869
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 4552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4861
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result