ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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Clone |
Length |
Accession No. |
nt | uniprot | TIGR-ORF | RAP-ORF | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | |||
| basd3b11 | 168 | AV922948 | not_full | emb|AM039895.1| Hordeum vulgare mRNA for putative AdoMet synthase 3 (sam3 gene) Length = 1447 | 206 | not_full | METL_ORYSA (P93438) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine adenosyltransferase 2) (AdoMet synthetase 2) Length = 394 | 224 | -- | --- | - | -- | --- | - |
| basd3b10 | 430 | AV922947 | not_full | gb|AF498268.1| Haynaldia villosa clone kong28 mRNA Length = 1474 | 95 | not_full | T3RE_SALTY (P40815) Type III restriction-modification system StyLTI enzyme res (EC 3.1.21.5) Length = 990 | 3 | -- | --- | - | -- | --- | - |
| basd3b09 | 450 | AV922946 | not_full | ref|XM_472371.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1614 | 86 | not_full | CALX_HELTU (Q39994) Calnexin homolog precursor Length = 540 | 60 | -- | --- | - | -- | --- | - |
| basd3b08 | 547 | AV922945 | not_full | emb|Y15962.1|HVGLP1 Hordeum vulgare mRNA for germin-like protein 1 Length = 833 | 114 | not_full | ABP20_PRUPE (O04011) Auxin-binding protein ABP20 precursor Length = 214 | 103 | -- | --- | - | -- | --- | - |
| basd3b05 | 72 | AV836269 | not_full | ref|NM_004105.3| Homo sapiens EGF-containing fibulin-like extracellular matrix protein 1 (EFEMP1), transcript variant 1, mRNA Length = 2936 | 38 | not_full | RPIA_BARQU (Q6FZP1) Ribose-5-phosphate isomerase A (EC 5.3.1.6) (Phosphoriboisomerase A) (PRI) Length = 234 | 1 | -- | --- | - | -- | --- | - |
| basd3b04 | 460 | AV922944 | full | emb|AJ511346.1|HVU511346 Hordeum vulgare subsp. vulgare partial mRNA for metallothioneine type2 (mt2b gene) Length = 241 | 347 | not_full | MT21_ORYSA (P94029) Metallothionein-like protein type 2 Length = 82 | 5 | -- | --- | - | -- | --- | - |
| basd3b03 | 462 | AV922943 | not_full | ref|XM_470294.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1340 | 64 | not_full | RPE_SOLTU (Q43843) Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) (Fragment) Length = 280 | 76 | -- | --- | - | -- | --- | - |
| basd3b01 | 615 | AV922942 | not_full | ref|XM_470030.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1934 | 95 | not_full | DXR_PROMM (Q7V6J8) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 412 | 86 | -- | --- | - | -- | --- | - |
| basd3a23 | 558 | AV922941 | not_full | dbj|AK109426.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E02, full insert sequence Length = 1013 | 75 | full | DHRS4_RABIT (Q9GKX2) Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184) (NADPH-dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) L | 329 | -- | --- | - | -- | --- | - |
| basd3a22 | 567 | AV922940 | not_full | gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds Length = 1044 | 442 | not_full | CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor (LHCII type I CAB-1B) (LHCP) Length = 265 | 109 | -- | --- | - | -- | --- | - |
| basd3a21 | 534 | AV922939 | not_full | dbj|AK060678.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C06, full insert sequence Length = 1032 | 21 | not_full | MDH_COLP3 (Q47VL0) Malate dehydrogenase (EC 1.1.1.37) Length = 311 | 10 | -- | --- | - | -- | --- | - |
| basd3a20 | 619 | AV922938 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 10 | -- | --- | - | -- | --- | - |
| basd3a19 | 518 | AV922937 | not_full | gb|U55859.1|TAU55859 Triticum aestivum heat shock protein 80 mRNA, complete cds Length = 2397 | 500 | not_full | HSP81_ORYSA (P33126) Heat shock protein 81-1 (HSP81-1) (Heat shock protein 82) Length = 699 | 197 | -- | --- | - | -- | --- | - |
| basd3a14 | 707 | AV922936 | not_full | ref|XM_467153.1| Oryza sativa (japonica cultivar-group), mRNA Length = 888 | 53 | not_full | ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and metalloproteinase domain 12) (Meltrin alpha) Length = 909 | 39 | -- | --- | - | -- | --- | - |
| basd3a13 | 455 | AV922935 | not_full | emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein Length = 1020 | 316 | not_full | TIP11_ORYSA (P50156) Probable aquaporin TIP1.1 (Tonoplast intrinsic protein 1.1) (OsTIP1.1) (rTIP1) Length = 250 | 216 | -- | --- | - | -- | --- | - |
| basd3a11 | 530 | AV922934 | not_full | emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9 Length = 875 | 405 | not_full | RBS_HORVU (Q40004) Ribulose bisphosphate carboxylase small chain, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 174 | 167 | -- | --- | - | -- | --- | - |
| basd3a10 | 526 | AV922933 | not_full | emb|AJ005286.1|HVH005286 Hordeum vulgare cv. Haisa mRNA for cp31AHv protein Length = 1318 | 135 | not_full | ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor Length = 315 | 491 | -- | --- | - | -- | --- | - |
| basd3a09 | 588 | AV922932 | not_full | dbj|AB219969.1| Triticum aestivum WAP2 mRNA for aspartic proteinase, complete cds Length = 1560 | 79 | not_full | ASPRX_ORYSA (P42211) Aspartic proteinase precursor (EC 3.4.23.-) Length = 496 | 132 | -- | --- | - | -- | --- | - |
| basd3a07 | 582 | AV922931 | not_full | emb|Z26322.1|HVALAAT H.vulgare mRNA for alanine aminotransferase Length = 1701 | 74 | not_full | ALA2_HORVU (P52894) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT) (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) Length = 482 | 154 | -- | --- | - | -- | --- | - |
| basd3a06 | 587 | AV922930 | not_full | dbj|AK071837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117K20, full insert sequence Length = 1584 | 500 | not_full | TBA2_ELEIN (O22348) Tubulin alpha-2 chain (Alpha-2 tubulin) Length = 447 | 395 | -- | --- | - | -- | --- | - |
| basd3a05 | 485 | AV922929 | not_full | ref|XM_469419.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1219 | 92 | not_full | SSM1_YEAST (P53078) Protein SSM1 Length = 280 | 19 | -- | --- | - | -- | --- | - |
| basd3a04 | 288 | AV922928 | not_full | emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA, complete CDS Length = 1426 | 72 | full | GUB2_HORVU (P12257) Lichenase-2 precursor (EC 3.2.1.73) (Lichenase II) (Endo-beta-1,3-1,4 glucanase II)3,1->4)-beta-glucanase isoenzyme EII) (Fragment) Length = 312 | 44 | -- | --- | - | -- | --- | - |
| basd3a03 | 597 | AV922927 | not_full | gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, complete sequence Length = 1457 | 163 | not_full | CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments) Length = 1262 | 31 | -- | --- | - | -- | --- | - |
| basd3a02 | 655 | AV836268 | full | ref|NM_190737.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 924 | 80 | not_full | URIC2_CANLI (P34799) Uricase-2 isozyme 2 (EC 1.7.3.3) (Uricase II clone pcClNUO-02) (Urate oxidase) Length = 301 | 40 | -- | --- | - | -- | --- | - |
| basd3a01 | 109 | AV922926 | not_full | gb|AY772669.1| Elymus sibiricus ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) mRNA, complete cds; chloroplast Length = 1510 | 500 | not_full | UVRC_DESPS (Q6AKB8) UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) Length = 607 | 1 | -- | --- | - | -- | --- | - |
| basd2p24 | 438 | AV922925 | not_full | ref|XM_463720.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 318 | 123 | not_full | OMP19_RHILO (Q98EC1) Outer membrane lipoprotein omp19 homolog precursor Length = 179 | 13 | -- | --- | - | -- | --- | - |
| basd2p23 | 573 | AV922924 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 2 | -- | --- | - | -- | --- | - |
| basd2p22 | 629 | AV922923 | not_full | dbj|AB109216.1| Triticum aestivum mRNA for cysteine protease, complete cds Length = 1260 | 55 | not_full | PAPA4_CARPA (P05994) Papaya proteinase 4 precursor (EC 3.4.22.25) (Papaya proteinase IV) (PPIV) (Papaya peptidase B) (Glycyl endopeptidase) Length = 348 | 150 | -- | --- | - | -- | --- | - |
| basd2p21 | 387 | AV922922 | not_full | emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease inhibitor Length = 498 | 27 | not_full | IBBWP_MAIZE (P31862) Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor Length = 102 | 38 | -- | --- | - | -- | --- | - |
| basd2p19 | 654 | AV836267 | not_full | gb|AY106062.1| Zea mays PCO084327 mRNA sequence Length = 1981 | 43 | not_full | SKU5_ARATH (Q9SU40) Putative monocopper oxidase precursor (Skewed roots) Length = 587 | 69 | -- | --- | - | -- | --- | - |
| basd2p17 | 373 | AV922921 | not_full | emb|X04133.1|HVUBIQR Barley mRNA for ubiquitin polyprecursor fragment Length = 703 | 500 | full | UBIQ_WHEAT (P69326) Ubiquitin Length = 76 | 136 | -- | --- | - | -- | --- | - |
| basd2p15 | 316 | AV922920 | not_full | gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;2 mRNA, complete cds Length = 853 | 230 | not_full | TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrinsic protein 2.2) (OsTIP2.2) Length = 248 | 247 | -- | --- | - | -- | --- | - |
| basd2p14 | 676 | AV922919 | full | gb|AF435815.1| Hordeum vulgare thioredoxin h-like protein mRNA, complete cds Length = 396 | 139 | not_full | TRXH_PICMA (O65049) Thioredoxin H-type (TRX-H) Length = 125 | 280 | -- | --- | - | -- | --- | - |
| basd2p13 | 637 | AV922918 | not_full | emb|AJ131737.1|SCE131737 Secale cereale mRNA for hypothetical protein, clone 5 Length = 845 | 428 | full | RBS1_WHEAT (P00871) Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit PWS4.3) Length = 174 | 161 | -- | --- | - | -- | --- | - |
| basd2p10 | 593 | AV922917 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_KLULA (Q6CQE5) Protein TAR1 Length = 109 | 4 | -- | --- | - | -- | --- | - |
| basd2p07 | 623 | AV922916 | not_full | ref|NM_197804.1| Oryza sativa (japonica cultivar-group) putative chlorophyll synthase (OSJNBa0057L21.2), mRNA Length = 2207 | 35 | not_full | CAO_ARATH (Q9MBA1) Chlorophyllide a oxygenase, chloroplast precursor (EC 1.-.-.-) (Chlorophyll a oxygenase) (Chlorophyll b synthase) Length = 536 | 43 | -- | --- | - | -- | --- | - |
| basd2p02 | 532 | AV922915 | not_full | ref|XM_466527.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1614 | 500 | not_full | EFTU_PEA (O24310) Elongation factor Tu, chloroplast precursor (EF-Tu) Length = 488 | 500 | -- | --- | - | -- | --- | - |
| basd2o24 | 505 | AV922914 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 8 | -- | --- | - | -- | --- | - |
| basd2o23 | 571 | AV922913 | not_full | ref|XM_465422.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2750 | 48 | not_full | KEULE_ARATH (Q9C5X3) SNARE-interacting protein KEULE Length = 666 | 43 | -- | --- | - | -- | --- | - |
| basd2o22 | 622 | AV922912 | not_full | gb|DQ128063.1| Triticum monococcum clone tm3-1, genomic sequence Length = 499 | 22 | not_full | PRIC1_RAT (Q71QF9) Prickle-like protein 1 (REST/NRSF-interacting LIM domain protein 1) Length = 831 | 8 | -- | --- | - | -- | --- | - |
| basd2o21 | 421 | AV922911 | not_full | gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding protein WCAB precursor (Wcab) mRNA, complete cds Length = 918 | 368 | not_full | CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor (LHCII type I CAB) (LHCP) Length = 266 | 121 | -- | --- | - | -- | --- | - |
| basd2o18 | 210 | AV836266 | not_full | emb|AL672185.7| Zebrafish DNA sequence from clone BUSM1-172P2 in linkage group 19 Contains the 3NULL part of the abcb3l2 gene for ATP-binding cassette, sub-family B (MDR/TAP), member 3 like 2, the 5NULL part of the mhc1uaa gene (major histocompatibility complex | 6 | not_full | SRG8_CAEEL (P46565) Serpentine receptor class gamma-8 (Protein srg-8) Length = 316 | 2 | -- | --- | - | -- | --- | - |
| basd2o16 | 604 | AV922910 | not_full | gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 | 33 | not_full | TIPT_DROME (Q9U3V5) Protein tiptop Length = 1024 | 12 | -- | --- | - | -- | --- | - |
| basd2o15 | 425 | AV922909 | not_full | ref|XM_482035.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1437 | 500 | not_full | LPHN2_HUMAN (O95490) Latrophilin-2 precursor (Calcium-independent alpha-latrotoxin receptor 2) (Latrophilin homolog 1) (Lectomedin-1) Length = 1459 | 12 | -- | --- | - | -- | --- | - |
| basd2o14 | 622 | AV922908 | not_full | gb|BT009262.1| Triticum aestivum clone wlk4.pk0022.b7:fis, full insert mRNA sequence Length = 2997 | 117 | not_full | PLDA1_MAIZE (Q43270) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 812 | 77 | -- | --- | - | -- | --- | - |
| basd2o13 | 619 | AV922907 | not_full | gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds Length = 1044 | 425 | full | CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor (LHCII type I CAB) (LHCP) Length = 266 | 155 | -- | --- | - | -- | --- | - |
| basd2o09 | 465 | AV922906 | not_full | gb|AY033628.1| Hordeum vulgare subsp. vulgare horcolin mRNA, complete cds Length = 665 | 13 | full | LEC_HORVU (P82953) Mannose-specific lectin (Agglutinin) (Fragments) Length = 77 | 59 | -- | --- | - | -- | --- | - |
| basd2o08 | 604 | AV922905 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | KPRS4_ORYSA (Q6ZFT5) Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4) Length = 325 | 1 | -- | --- | - | -- | --- | - |
| basd2o07 | 697 | AV836265 | not_full | gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 | 46 | not_full | CMC1_CAEEL (Q21153) Probable calcium-binding mitochondrial carrier K02F3.2 Length = 707 | 131 | -- | --- | - | -- | --- | - |
| basd2o06 | 500 | AV922904 | not_full | ref|XM_474131.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1377 | 82 | not_full | ORYA_ORYSA (P25776) Oryzain alpha chain precursor (EC 3.4.22.-) Length = 458 | 111 | -- | --- | - | -- | --- | - |
