ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2o07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 Score = 753 bits (380), Expect = 0.0 Identities = 383/384 (99%) Strand = Plus / Plus Query: 251 cctcgacatgaccaagctctatgtggttggggccggcatgttcagctgcgtgaccgtggc 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2899 cctcgacatgaccaagctctatgtggttggggccggcatgttcagctgcgtgaccgtggc 2958 Query: 311 gctctacccggtctctgtgatcaagacccggatgcaggttgcctccggggaggccatgag 370 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2959 gctctacccggtctctgtgatcaagacccggatgcaggttgcctcgggggaggccatgag 3018 Query: 371 gaggaacgccctggccacctttaagaacatcctcaaggtggatggggtgcctgggctcta 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3019 gaggaacgccctggccacctttaagaacatcctcaaggtggatggggtgcctgggctcta 3078 Query: 431 ccgagggtttgggaccgtcatcactggggctatcccggctaggattatcttcctcacggc 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3079 ccgagggtttgggaccgtcatcactggggctatcccggctaggattatcttcctcacggc 3138 Query: 491 gctcgagaagacaaaggcgacttcgctcaagcttgtcgagcctcttcagctgtcagagtc 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3139 gctcgagaagacaaaggcgacttcgctcaagcttgtcgagcctcttcagctgtcagagtc 3198 Query: 551 gatggaggctgcccttgctaatggccttggtggtttgacggcgtctctgtgttcgcaggc 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3199 gatggaggctgcccttgctaatggccttggtggtttgacggcgtctctgtgttcgcaggc 3258 Query: 611 cgtgtttgtgcccattgatgtggt 634 |||||||||||||||||||||||| Sbjct: 3259 cgtgtttgtgcccattgatgtggt 3282 Score = 222 bits (112), Expect = 1e-54 Identities = 112/112 (100%) Strand = Plus / Plus Query: 139 ggccgccgcgccctcgcctccggggatcgcgggattgggcggccatggacacctctacta 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2519 ggccgccgcgccctcgcctccggggatcgcgggattgggcggccatggacacctctacta 2578 Query: 199 gggcggccaagatcccctccctcccccaacagacggagatcaactgggacaa 250 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2579 gggcggccaagatcccctccctcccccaacagacggagatcaactgggacaa 2630 Score = 208 bits (105), Expect = 2e-50 Identities = 108/109 (99%) Strand = Plus / Plus Query: 14 gccagaggaggcgaggaacacatggtctctttcctccccgctgaagagtagctgccaaga 73 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 2388 gccagaggaggcgaggaacacatgctctctttcctccccgctgaagagtagctgccaaga 2447 Query: 74 ccaccacggaagcggaggcgcaccacccaggcgggccattctcgccgag 122 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2448 ccaccacggaagcggaggcgcaccacccaggcgggccattctcgccgag 2496 Score = 131 bits (66), Expect = 3e-27 Identities = 66/66 (100%) Strand = Plus / Plus Query: 632 ggttagtcagaaattgatggttcaaggatattctggtcatgttagatataagggtggaat 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3396 ggttagtcagaaattgatggttcaaggatattctggtcatgttagatataagggtggaat 3455 Query: 692 cgatgt 697 |||||| Sbjct: 3456 cgatgt 3461
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 642 bits (324), Expect = 0.0 Identities = 369/384 (96%) Strand = Plus / Plus Query: 251 cctcgacatgaccaagctctatgtggttggggccggcatgttcagctgcgtgaccgtggc 310 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 30563 cctcgacatgaccaagctctatgtggtgggggccggcatgttcagctgcgtgaccgtggc 30622 Query: 311 gctctacccggtctctgtgatcaagacccggatgcaggttgcctccggggaggccatgag 370 |||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 30623 gctctacccggtgtccgtgatcaagacccggatgcaggtggcctccggggaggccatgag 30682 Query: 371 gaggaacgccctggccacctttaagaacatcctcaaggtggatggggtgcctgggctcta 430 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 30683 gaggaacgccctggccaccttcaagaacatcctcaaggtggatggggtgcctgggctcta 30742 Query: 431 ccgagggtttgggaccgtcatcactggggctatcccggctaggattatcttcctcacggc 490 ||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| Sbjct: 30743 ccgggggtttgggaccgtcatcaccggggctatcccggctaggatcatctttctcacggc 30802 Query: 491 gctcgagaagacaaaggcgacttcgctcaagcttgtcgagcctcttcagctgtcagagtc 550 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 30803 gcttgagaagacaaaggcgacttcgctcaagcttgtcgagccacttcagctgtcagagtc 30862 Query: 551 gatggaggctgcccttgctaatggccttggtggtttgacggcgtctctgtgttcgcaggc 610 |||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct: 30863 gatggaggctgcgcttgctaatggcctcggtggtttgacagcgtctctgtgctcgcaggc 30922 Query: 611 cgtgtttgtgcccattgatgtggt 634 |||||||||||||||||||||||| Sbjct: 30923 cgtgtttgtgcccattgatgtggt 30946 Score = 188 bits (95), Expect = 2e-44 Identities = 104/107 (97%) Strand = Plus / Plus Query: 144 ccgcgccctcgcctccggggatcgcgggattgggcggccatggacacctctactagggcg 203 |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 30185 ccgcgctctcgcctcccgggatcgcgggattgggcggcgatggacacctctactagggcg 30244 Query: 204 gccaagatcccctccctcccccaacagacggagatcaactgggacaa 250 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30245 gccaagatcccctccctcccccaacagacggagatcaactgggacaa 30291 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 632 ggttagtcagaaattgatggttcaaggatattctggtcatgttagatataagggtggaat 691 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 31054 ggttagccagaaattgatggttcaaggatattctggtcatgtcagatataagggtggaat 31113 Query: 692 cgatgt 697 ||||| Sbjct: 31114 agatgt 31119 Score = 93.7 bits (47), Expect = 7e-16 Identities = 53/55 (96%) Strand = Plus / Plus Query: 14 gccagaggaggcgaggaacacatggtctctttcctccccgctgaagagtagctgc 68 |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 30012 gccagaggaggcgaggaacacatgctctctttcctccgcgctgaagagtagctgc 30066
>ref|XM_469800.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1681 Score = 450 bits (227), Expect = e-123 Identities = 422/487 (86%) Strand = Plus / Plus Query: 203 ggccaagatcccctccctcccccaacagacggagatcaactgggacaacctcgacatgac 262 |||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||| ||| Sbjct: 271 ggccaagatcccgtcccttcaccaccagacggagatcaactgggacaacctcgacaagac 330 Query: 263 caagctctatgtggttggggccggcatgttcagctgcgtgaccgtggcgctctacccggt 322 ||||||||||||||| || ||||| |||||||| |||||||||||||||| |||||||| Sbjct: 331 caagctctatgtggtgggagccgggatgttcagtggcgtgaccgtggcgctgtacccggt 390 Query: 323 ctctgtgatcaagacccggatgcaggttgcctccggggaggccatgaggaggaacgccct 382 || ||||| ||||||||||||||||| ||| | ||||| ||| |||||||||| ||| Sbjct: 391 atcggtgataaagacccggatgcaggtagccactggggaagccgtgaggaggaatgccgc 450 Query: 383 ggccacctttaagaacatcctcaaggtggatggggtgcctgggctctaccgagggtttgg 442 ||| || || | |||||| ||||||||||| || ||||| ||||| |||||||||||||| Sbjct: 451 ggcaacattcaggaacattctcaaggtggacggagtgcccgggctgtaccgagggtttgg 510 Query: 443 gaccgtcatcactggggctatcccggctaggattatcttcctcacggcgctcgagaagac 502 ||| || ||||| ||||| ||||| |||||||||||||| || || ||||| |||| || Sbjct: 511 gacagttatcacaggggccatccctgctaggattatctttcttacagcgcttgagacaac 570 Query: 503 aaaggcgacttcgctcaagcttgtcgagcctcttcagctgtcagagtcgatggaggctgc 562 ||||||| | ||||| |||||||| || || || ||||||| ||| || | | || || Sbjct: 571 aaaggcggcctcgcttaagcttgttgaaccatttaagctgtcggagccggtacaagcagc 630 Query: 563 ccttgctaatggccttggtggtttgacggcgtctctgtgttcgcaggccgtgtttgtgcc 622 | |||| ||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||| Sbjct: 631 ctttgccaatggccttggcggtttgtcggcatctctatgttcgcaggctgtgtttgtgcc 690 Query: 623 cattgatgtggttagtcagaaattgatggttcaaggatattctggtcatgttagatataa 682 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 691 cattgatgtggttagccagaaattgatggttcaaggatattctggtcatgttagatataa 750 Query: 683 gggtgga 689 ||||||| Sbjct: 751 gggtgga 757
>dbj|AK101584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050O16, full insert sequence Length = 1711 Score = 450 bits (227), Expect = e-123 Identities = 422/487 (86%) Strand = Plus / Plus Query: 203 ggccaagatcccctccctcccccaacagacggagatcaactgggacaacctcgacatgac 262 |||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||| ||| Sbjct: 330 ggccaagatcccgtcccttcaccaccagacggagatcaactgggacaacctcgacaagac 389 Query: 263 caagctctatgtggttggggccggcatgttcagctgcgtgaccgtggcgctctacccggt 322 ||||||||||||||| || ||||| |||||||| |||||||||||||||| |||||||| Sbjct: 390 caagctctatgtggtgggagccgggatgttcagtggcgtgaccgtggcgctgtacccggt 449 Query: 323 ctctgtgatcaagacccggatgcaggttgcctccggggaggccatgaggaggaacgccct 382 || ||||| ||||||||||||||||| ||| | ||||| ||| |||||||||| ||| Sbjct: 450 atcggtgataaagacccggatgcaggtagccactggggaagccgtgaggaggaatgccgc 509 Query: 383 ggccacctttaagaacatcctcaaggtggatggggtgcctgggctctaccgagggtttgg 442 ||| || || | |||||| ||||||||||| || ||||| ||||| |||||||||||||| Sbjct: 510 ggcaacattcaggaacattctcaaggtggacggagtgcccgggctgtaccgagggtttgg 569 Query: 443 gaccgtcatcactggggctatcccggctaggattatcttcctcacggcgctcgagaagac 502 ||| || ||||| ||||| ||||| |||||||||||||| || || ||||| |||| || Sbjct: 570 gacagttatcacaggggccatccctgctaggattatctttcttacagcgcttgagacaac 629 Query: 503 aaaggcgacttcgctcaagcttgtcgagcctcttcagctgtcagagtcgatggaggctgc 562 ||||||| | ||||| |||||||| || || || ||||||| ||| || | | || || Sbjct: 630 aaaggcggcctcgcttaagcttgttgaaccatttaagctgtcggagccggtacaagcagc 689 Query: 563 ccttgctaatggccttggtggtttgacggcgtctctgtgttcgcaggccgtgtttgtgcc 622 | |||| ||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||| Sbjct: 690 ctttgccaatggccttggcggtttgtcggcatctctatgttcgcaggctgtgtttgtgcc 749 Query: 623 cattgatgtggttagtcagaaattgatggttcaaggatattctggtcatgttagatataa 682 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 750 cattgatgtggttagccagaaattgatggttcaaggatattctggtcatgttagatataa 809 Query: 683 gggtgga 689 ||||||| Sbjct: 810 gggtgga 816
>gb|BT017820.1| Zea mays clone EL01N0508A02.c mRNA sequence Length = 1459 Score = 295 bits (149), Expect = 1e-76 Identities = 411/495 (83%), Gaps = 5/495 (1%) Strand = Plus / Plus Query: 196 ctagggcggccaagatcccctccctcccccaacagacggagatcaactgggacaacctcg 255 ||||||| ||||||||||| || |||| ||| |||||||||||||||||| ||||||| Sbjct: 56 ctagggccgccaagatcccgtcgctccacca---gacggagatcaactgggataacctcg 112 Query: 256 acatgaccaagctctatgtggttggggccggcatgttcagctgcgtgaccgtggcgctct 315 ||| |||||||||||| ||||| || || |||||||||||| | || ||||||||||| | Sbjct: 113 acaagaccaagctctacgtggtgggcgcaggcatgttcagcggggtcaccgtggcgctgt 172 Query: 316 acccggtctctgtgatcaagacccggatgcaggttgcctccggggaggccatgaggagga 375 |||| || || ||| ||||||||||||||||||||||||| ||||| |||||| |||||| Sbjct: 173 accctgtatcggtggtcaagacccggatgcaggttgcctctggggatgccatggggagga 232 Query: 376 acgccctggccacctttaagaacatcctcaaggtggatggggtgcctgggctctaccgag 435 |||| ||||| ||||| ||||||||||| |||||||| || ||||| ||||| ||||| | Sbjct: 233 acgcgctggctaccttcaagaacatccttaaggtggacggcgtgccagggctgtaccggg 292 Query: 436 ggtttgggaccgtcatcactggggctatcccggctaggattatcttcctcacggcgctcg 495 ||||| || || || | ||||||| | || ||||||||||||||||||||||||| | Sbjct: 293 ggtttcctactgttataattggggctgtaccaactaggattatcttcctcacggcgcttg 352 Query: 496 agaagacaaaggcgacttcgctcaagcttgtcgagcctcttc-agctgtcagagtcgatg 554 ||| || || || | || ||||||||||| ||||| |||| ||||||||||| || || Sbjct: 353 agacaaccaaagcagcctctctcaagcttgttgagcc-cttcaagctgtcagagccggtg 411 Query: 555 gaggctgcccttgctaatggccttggtggtttgacggcgtctctgtgttcgcaggccgtg 614 |||| ||| |||| |||||||||| ||| || |||| || ||||||||||| | Sbjct: 412 caggccgcctttgccaatggccttgccggtctgtcggcatccacatgttcgcaggctatt 471 Query: 615 tttgtgcccattgatgtggttagtcagaaattgatggttcaaggatattctggtcatgtt 674 ||||| || ||||||||| | || |||||||||||||||||||| ||||||||| |||| Sbjct: 472 tttgtcccaattgatgtgatcagccagaaattgatggttcaagggtattctggtaatgtc 531 Query: 675 agatataagggtgga 689 ||||| || |||||| Sbjct: 532 agatacaaaggtgga 546
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 285 bits (144), Expect = 1e-73 Identities = 324/384 (84%) Strand = Plus / Plus Query: 251 cctcgacatgaccaagctctatgtggttggggccggcatgttcagctgcgtgaccgtggc 310 |||||||| |||||||||||||||||| || ||||| |||||||| ||||||||||||| Sbjct: 30827071 cctcgacaagaccaagctctatgtggtgggagccgggatgttcagtggcgtgaccgtggc 30827130 Query: 311 gctctacccggtctctgtgatcaagacccggatgcaggttgcctccggggaggccatgag 370 ||| |||||||| || ||||| ||||||||||||||||| ||| | ||||| ||| |||| Sbjct: 30827131 gctgtacccggtatcggtgataaagacccggatgcaggtagccactggggaagccgtgag 30827190 Query: 371 gaggaacgccctggccacctttaagaacatcctcaaggtggatggggtgcctgggctcta 430 |||||| ||| ||| || || | |||||| ||||||||||| || ||||| ||||| || Sbjct: 30827191 gaggaatgccgcggcaacattcaggaacattctcaaggtggacggagtgcccgggctgta 30827250 Query: 431 ccgagggtttgggaccgtcatcactggggctatcccggctaggattatcttcctcacggc 490 ||||||||||||||| || ||||| ||||| ||||| |||||||||||||| || || || Sbjct: 30827251 ccgagggtttgggacagttatcacaggggccatccctgctaggattatctttcttacagc 30827310 Query: 491 gctcgagaagacaaaggcgacttcgctcaagcttgtcgagcctcttcagctgtcagagtc 550 ||| |||| ||||||||| | ||||| |||||||| || || || ||||||| ||| | Sbjct: 30827311 gcttgagacaacaaaggcggcctcgcttaagcttgttgaaccatttaagctgtcggagcc 30827370 Query: 551 gatggaggctgcccttgctaatggccttggtggtttgacggcgtctctgtgttcgcaggc 610 | | | || ||| |||| ||||||||||| |||||| |||| ||||| ||||||||||| Sbjct: 30827371 ggtacaagcagcctttgccaatggccttggcggtttgtcggcatctctatgttcgcaggc 30827430 Query: 611 cgtgtttgtgcccattgatgtggt 634 ||||||||||||||||||||||| Sbjct: 30827431 tgtgtttgtgcccattgatgtggt 30827454 Score = 107 bits (54), Expect = 5e-20 Identities = 57/58 (98%) Strand = Plus / Plus Query: 632 ggttagtcagaaattgatggttcaaggatattctggtcatgttagatataagggtgga 689 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30827559 ggttagccagaaattgatggttcaaggatattctggtcatgttagatataagggtgga 30827616 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 203 ggccaagatcccctccctcccccaacagacggagatcaactgggacaa 250 |||||||||||| ||||| | ||| ||||||||||||||||||||||| Sbjct: 30826576 ggccaagatcccgtcccttcaccaccagacggagatcaactgggacaa 30826623
>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete sequence Length = 122496 Score = 285 bits (144), Expect = 1e-73 Identities = 324/384 (84%) Strand = Plus / Minus Query: 251 cctcgacatgaccaagctctatgtggttggggccggcatgttcagctgcgtgaccgtggc 310 |||||||| |||||||||||||||||| || ||||| |||||||| ||||||||||||| Sbjct: 116019 cctcgacaagaccaagctctatgtggtgggagccgggatgttcagtggcgtgaccgtggc 115960 Query: 311 gctctacccggtctctgtgatcaagacccggatgcaggttgcctccggggaggccatgag 370 ||| |||||||| || ||||| ||||||||||||||||| ||| | ||||| ||| |||| Sbjct: 115959 gctgtacccggtatcggtgataaagacccggatgcaggtagccactggggaagccgtgag 115900 Query: 371 gaggaacgccctggccacctttaagaacatcctcaaggtggatggggtgcctgggctcta 430 |||||| ||| ||| || || | |||||| ||||||||||| || ||||| ||||| || Sbjct: 115899 gaggaatgccgcggcaacattcaggaacattctcaaggtggacggagtgcccgggctgta 115840 Query: 431 ccgagggtttgggaccgtcatcactggggctatcccggctaggattatcttcctcacggc 490 ||||||||||||||| || ||||| ||||| ||||| |||||||||||||| || || || Sbjct: 115839 ccgagggtttgggacagttatcacaggggccatccctgctaggattatctttcttacagc 115780 Query: 491 gctcgagaagacaaaggcgacttcgctcaagcttgtcgagcctcttcagctgtcagagtc 550 ||| |||| ||||||||| | ||||| |||||||| || || || ||||||| ||| | Sbjct: 115779 gcttgagacaacaaaggcggcctcgcttaagcttgttgaaccatttaagctgtcggagcc 115720 Query: 551 gatggaggctgcccttgctaatggccttggtggtttgacggcgtctctgtgttcgcaggc 610 | | | || ||| |||| ||||||||||| |||||| |||| ||||| ||||||||||| Sbjct: 115719 ggtacaagcagcctttgccaatggccttggcggtttgtcggcatctctatgttcgcaggc 115660 Query: 611 cgtgtttgtgcccattgatgtggt 634 ||||||||||||||||||||||| Sbjct: 115659 tgtgtttgtgcccattgatgtggt 115636 Score = 107 bits (54), Expect = 5e-20 Identities = 57/58 (98%) Strand = Plus / Minus Query: 632 ggttagtcagaaattgatggttcaaggatattctggtcatgttagatataagggtgga 689 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 115531 ggttagccagaaattgatggttcaaggatattctggtcatgttagatataagggtgga 115474 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 203 ggccaagatcccctccctcccccaacagacggagatcaactgggacaa 250 |||||||||||| ||||| | ||| ||||||||||||||||||||||| Sbjct: 116514 ggccaagatcccgtcccttcaccaccagacggagatcaactgggacaa 116467
>gb|AY013245.2| Oryza sativa (japonica cultivar-group) chromosome 3 BAC 36I5, partial sequence Length = 65547 Score = 285 bits (144), Expect = 1e-73 Identities = 324/384 (84%) Strand = Plus / Plus Query: 251 cctcgacatgaccaagctctatgtggttggggccggcatgttcagctgcgtgaccgtggc 310 |||||||| |||||||||||||||||| || ||||| |||||||| ||||||||||||| Sbjct: 5060 cctcgacaagaccaagctctatgtggtgggagccgggatgttcagtggcgtgaccgtggc 5119 Query: 311 gctctacccggtctctgtgatcaagacccggatgcaggttgcctccggggaggccatgag 370 ||| |||||||| || ||||| ||||||||||||||||| ||| | ||||| ||| |||| Sbjct: 5120 gctgtacccggtatcggtgataaagacccggatgcaggtagccactggggaagccgtgag 5179 Query: 371 gaggaacgccctggccacctttaagaacatcctcaaggtggatggggtgcctgggctcta 430 |||||| ||| ||| || || | |||||| ||||||||||| || ||||| ||||| || Sbjct: 5180 gaggaatgccgcggcaacattcaggaacattctcaaggtggacggagtgcccgggctgta 5239 Query: 431 ccgagggtttgggaccgtcatcactggggctatcccggctaggattatcttcctcacggc 490 ||||||||||||||| || ||||| ||||| ||||| |||||||||||||| || || || Sbjct: 5240 ccgagggtttgggacagttatcacaggggccatccctgctaggattatctttcttacagc 5299 Query: 491 gctcgagaagacaaaggcgacttcgctcaagcttgtcgagcctcttcagctgtcagagtc 550 ||| |||| ||||||||| | ||||| |||||||| || || || ||||||| ||| | Sbjct: 5300 gcttgagacaacaaaggcggcctcgcttaagcttgttgaaccatttaagctgtcggagcc 5359 Query: 551 gatggaggctgcccttgctaatggccttggtggtttgacggcgtctctgtgttcgcaggc 610 | | | || ||| |||| ||||||||||| |||||| |||| ||||| ||||||||||| Sbjct: 5360 ggtacaagcagcctttgccaatggccttggcggtttgtcggcatctctatgttcgcaggc 5419 Query: 611 cgtgtttgtgcccattgatgtggt 634 ||||||||||||||||||||||| Sbjct: 5420 tgtgtttgtgcccattgatgtggt 5443 Score = 107 bits (54), Expect = 5e-20 Identities = 57/58 (98%) Strand = Plus / Plus Query: 632 ggttagtcagaaattgatggttcaaggatattctggtcatgttagatataagggtgga 689 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5548 ggttagccagaaattgatggttcaaggatattctggtcatgttagatataagggtgga 5605 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 203 ggccaagatcccctccctcccccaacagacggagatcaactgggacaa 250 |||||||||||| ||||| | ||| ||||||||||||||||||||||| Sbjct: 4565 ggccaagatcccgtcccttcaccaccagacggagatcaactgggacaa 4612
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 285 bits (144), Expect = 1e-73 Identities = 324/384 (84%) Strand = Plus / Plus Query: 251 cctcgacatgaccaagctctatgtggttggggccggcatgttcagctgcgtgaccgtggc 310 |||||||| |||||||||||||||||| || ||||| |||||||| ||||||||||||| Sbjct: 30917594 cctcgacaagaccaagctctatgtggtgggagccgggatgttcagtggcgtgaccgtggc 30917653 Query: 311 gctctacccggtctctgtgatcaagacccggatgcaggttgcctccggggaggccatgag 370 ||| |||||||| || ||||| ||||||||||||||||| ||| | ||||| ||| |||| Sbjct: 30917654 gctgtacccggtatcggtgataaagacccggatgcaggtagccactggggaagccgtgag 30917713 Query: 371 gaggaacgccctggccacctttaagaacatcctcaaggtggatggggtgcctgggctcta 430 |||||| ||| ||| || || | |||||| ||||||||||| || ||||| ||||| || Sbjct: 30917714 gaggaatgccgcggcaacattcaggaacattctcaaggtggacggagtgcccgggctgta 30917773 Query: 431 ccgagggtttgggaccgtcatcactggggctatcccggctaggattatcttcctcacggc 490 ||||||||||||||| || ||||| ||||| ||||| |||||||||||||| || || || Sbjct: 30917774 ccgagggtttgggacagttatcacaggggccatccctgctaggattatctttcttacagc 30917833 Query: 491 gctcgagaagacaaaggcgacttcgctcaagcttgtcgagcctcttcagctgtcagagtc 550 ||| |||| ||||||||| | ||||| |||||||| || || || ||||||| ||| | Sbjct: 30917834 gcttgagacaacaaaggcggcctcgcttaagcttgttgaaccatttaagctgtcggagcc 30917893 Query: 551 gatggaggctgcccttgctaatggccttggtggtttgacggcgtctctgtgttcgcaggc 610 | | | || ||| |||| ||||||||||| |||||| |||| ||||| ||||||||||| Sbjct: 30917894 ggtacaagcagcctttgccaatggccttggcggtttgtcggcatctctatgttcgcaggc 30917953 Query: 611 cgtgtttgtgcccattgatgtggt 634 ||||||||||||||||||||||| Sbjct: 30917954 tgtgtttgtgcccattgatgtggt 30917977 Score = 107 bits (54), Expect = 5e-20 Identities = 57/58 (98%) Strand = Plus / Plus Query: 632 ggttagtcagaaattgatggttcaaggatattctggtcatgttagatataagggtgga 689 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30918082 ggttagccagaaattgatggttcaaggatattctggtcatgttagatataagggtgga 30918139 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 203 ggccaagatcccctccctcccccaacagacggagatcaactgggacaa 250 |||||||||||| ||||| | ||| ||||||||||||||||||||||| Sbjct: 30917099 ggccaagatcccgtcccttcaccaccagacggagatcaactgggacaa 30917146
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 248 bits (125), Expect = 2e-62 Identities = 322/385 (83%), Gaps = 2/385 (0%) Strand = Plus / Plus Query: 251 cctcgacatgaccaagctctatgtggttggggccggcatgttcagctgcgtgaccgtggc 310 |||||||| |||||||||||| ||||| || || |||||||||||| |||| |||||||| Sbjct: 8339 cctcgacaagaccaagctctacgtggtgggcgcaggcatgttcagcggcgtcaccgtggc 8398 Query: 311 gctctacccggtctctgtgatcaagacccggatgcaggttgcctccggggaggccatgag 370 ||| || || ||||| ||| ||||||||||||||||||||||||| ||||| |||||||| Sbjct: 8399 gctgtatcctgtctcggtggtcaagacccggatgcaggttgcctctggggacgccatgag 8458 Query: 371 gaggaacgccctggccacctttaagaacatcctcaaggtggatggggtgcctgggctcta 430 ||||||||| ||||| ||||| ||||||||||||||| |||| || ||||| ||||| || Sbjct: 8459 gaggaacgcgctggctaccttcaagaacatcctcaagatggacggcgtgccagggctgta 8518 Query: 431 ccgagggtttgggaccgtcatcactggggctatcccggctaggattatcttcctcacggc 490 ||| ||||||| ||||| |||| ||||||| | || ||||||| ||||||||||| || Sbjct: 8519 ccgggggtttgctaccgttatcattggggctgtaccaactaggatcatcttcctcacagc 8578 Query: 491 gctcgagaagacaaaggcgacttcgctcaagcttgtcgagcctcttc-agctgtcagagt 549 ||| |||| || || || | ||||| |||||||| ||||| |||| ||||||||||| Sbjct: 8579 gcttgagacaaccaaagcagcctcgcttaagcttgttgagcc-cttcaagctgtcagagc 8637 Query: 550 cgatggaggctgcccttgctaatggccttggtggtttgacggcgtctctgtgttcgcagg 609 || || ||||||| |||| |||||||||| |||| || | |||||| |||||||||| Sbjct: 8638 cggtgcgggctgcctttgccaatggccttgctggtctgtcagcgtctacatgttcgcagg 8697 Query: 610 ccgtgtttgtgcccattgatgtggt 634 | | ||||| || ||||||||||| Sbjct: 8698 ctatttttgttccaattgatgtggt 8722 Score = 63.9 bits (32), Expect = 7e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 634 ttagtcagaaattgatggttcaaggatattctggtcatgttagatataagggtgga 689 |||| |||||||||||||||||||||||||||||| ||| ||||| || |||||| Sbjct: 8850 ttagccagaaattgatggttcaaggatattctggtaatgccagatacaaaggtgga 8905 Score = 50.1 bits (25), Expect = 0.010 Identities = 48/55 (87%), Gaps = 3/55 (5%) Strand = Plus / Plus Query: 196 ctagggcggccaagatcccctccctcccccaacagacggagatcaactgggacaa 250 ||||||| ||||||||||| || |||| ||| ||||||||||||||||||||| Sbjct: 8007 ctagggccgccaagatcccgtcgctccacca---gacggagatcaactgggacaa 8058
>gb|BC020144.1| Mus musculus desmoglein 2, mRNA (cDNA clone IMAGE:3993281), complete cds Length = 988 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 ccgccgcgccctcgcctccggg 162 |||||||||||||||||||||| Sbjct: 54 ccgccgcgccctcgcctccggg 33
>ref|NM_007883.1| Mus musculus desmoglein 2 (Dsg2), mRNA Length = 4065 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 ccgccgcgccctcgcctccggg 162 |||||||||||||||||||||| Sbjct: 188 ccgccgcgccctcgcctccggg 167
>ref|NM_174656.2| Bos taurus solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 (SLC25A1), mRNA Length = 1151 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 327 gtgatcaagacccggatgcagg 348 |||||||||||||||||||||| Sbjct: 734 gtgatcaagacccggatgcagg 755
>gb|BC044848.1| Mus musculus desmoglein 2, mRNA (cDNA clone IMAGE:5355674), complete cds Length = 3611 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 ccgccgcgccctcgcctccggg 162 |||||||||||||||||||||| Sbjct: 121 ccgccgcgccctcgcctccggg 100
>gb|AC132091.3| Mus musculus BAC clone RP24-465H15 from 18, complete sequence Length = 140256 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 ccgccgcgccctcgcctccggg 162 |||||||||||||||||||||| Sbjct: 34671 ccgccgcgccctcgcctccggg 34650
>emb|X97773.1|BTMITRICP B.taurus mRNA for mitochondrial tricarboxylate carrier protein Length = 1151 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 327 gtgatcaagacccggatgcagg 348 |||||||||||||||||||||| Sbjct: 734 gtgatcaagacccggatgcagg 755
>dbj|AB072269.1| Mus musculus mDSG2 mRNA for desmoglein 2, complete cds Length = 4065 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 ccgccgcgccctcgcctccggg 162 |||||||||||||||||||||| Sbjct: 188 ccgccgcgccctcgcctccggg 167
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10, complete sequence Length = 156772 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 gccgccgcgccctcgcctccg 160 ||||||||||||||||||||| Sbjct: 103434 gccgccgcgccctcgcctccg 103454
>emb|Z94044.2|HS154P24 Human DNA sequence from clone RP1-154P24 on chromosome Xp11.1-11.23 Contains the 5' end of the gene for upstream regulatory element binding protein 1 (UREB1) and three CpG islands, complete sequence Length = 110870 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 tcccctccctcccccaacaga 231 ||||||||||||||||||||| Sbjct: 67075 tcccctccctcccccaacaga 67095
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 gccgccgcgccctcgcctccg 160 ||||||||||||||||||||| Sbjct: 19756545 gccgccgcgccctcgcctccg 19756565
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 gccgccgcgccctcgcctccg 160 ||||||||||||||||||||| Sbjct: 4216955 gccgccgcgccctcgcctccg 4216975
>gb|AC137741.5| Homo sapiens chromosome 8, clone CTD-2059D3, complete sequence Length = 117100 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 aagatcccctccctcccccaa 227 ||||||||||||||||||||| Sbjct: 9904 aagatcccctccctcccccaa 9884
>gb|AC012513.12| Homo sapiens BAC clone RP11-566E18 from 2, complete sequence Length = 164935 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 tcccctccctcccccaacaga 231 ||||||||||||||||||||| Sbjct: 156021 tcccctccctcccccaacaga 156001
>gb|AC069155.6| Homo sapiens BAC clone RP11-737C8 from 2, complete sequence Length = 123153 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 tcccctccctcccccaacaga 231 ||||||||||||||||||||| Sbjct: 62644 tcccctccctcccccaacaga 62624
>dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0048D08 Length = 145772 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 gccgccgcgccctcgcctccg 160 ||||||||||||||||||||| Sbjct: 88551 gccgccgcgccctcgcctccg 88571
>gb|AC008123.9|AC008123 Homo sapiens 2q35 BAC RPCI11-1064L18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168601 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 tcccctccctcccccaacaga 231 ||||||||||||||||||||| Sbjct: 142503 tcccctccctcccccaacaga 142483
>dbj|AP006543.1| Homo sapiens genomic DNA, chromosome 8p12, clone: KB1250F11, complete sequence Length = 98657 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 aagatcccctccctcccccaa 227 ||||||||||||||||||||| Sbjct: 62536 aagatcccctccctcccccaa 62556
>dbj|AP006180.2| Homo sapiens genomic DNA, chromosome 8p12, clone: KB1746H11, complete sequence Length = 26842 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 aagatcccctccctcccccaa 227 ||||||||||||||||||||| Sbjct: 9638 aagatcccctccctcccccaa 9658
>gb|AY803117.1| Sus scrofa chromosome 17 clone pkmCon86, mRNA sequence Length = 1437 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 attcggcacgagggccagag 20 |||||||||||||||||||| Sbjct: 6 attcggcacgagggccagag 25
>gb|AY549596.1| Enterobacter sp. TERIPS12009 16S ribosomal RNA gene, partial sequence Length = 451 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ttcctccccgctgaagagta 63 |||||||||||||||||||| Sbjct: 387 ttcctccccgctgaagagta 368
>gb|AC005817.8| Mus musculus strain 129/Sv clone ct7-581i11 map 16, complete sequence Length = 188708 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 tgtgatcaagacccggatgcaggt 349 ||||||||||||| |||||||||| Sbjct: 25632 tgtgatcaagaccaggatgcaggt 25609
>gb|AC161585.2| Mus musculus BAC clone RP24-506J9 from chromosome 13, complete sequence Length = 211181 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tcccctccctcccccaacag 230 |||||||||||||||||||| Sbjct: 156933 tcccctccctcccccaacag 156914
>gb|AC162922.4| Mus musculus BAC clone RP23-314M6 from chromosome 3, complete sequence Length = 245207 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 gggccagaggaggcgaggaacaca 35 |||| ||||||||||||||||||| Sbjct: 147618 gggcaagaggaggcgaggaacaca 147595
>gb|AC003063.7| Mus musculus Chromosome 16 BAC Clone b40-o20 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 128143 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 tgtgatcaagacccggatgcaggt 349 ||||||||||||| |||||||||| Sbjct: 94825 tgtgatcaagaccaggatgcaggt 94802
>gb|AC129293.9| Mus musculus BAC clone RP24-535M14 from chromosome 3, complete sequence Length = 163981 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 gggccagaggaggcgaggaacaca 35 |||| ||||||||||||||||||| Sbjct: 7438 gggcaagaggaggcgaggaacaca 7415
>gb|L76134.1|HUMCTPG Homo sapiens citrate transport protein gene, complete cds; nuclear gene for mitochondrial product Length = 3501 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 tgtgatcaagacccggatgcaggt 349 |||||| ||||||||||||||||| Sbjct: 2340 tgtgattaagacccggatgcaggt 2363
>gb|AC004463.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 79h12 In DGCR Region, complete sequence Length = 38254 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 tgtgatcaagacccggatgcaggt 349 |||||| ||||||||||||||||| Sbjct: 33613 tgtgattaagacccggatgcaggt 33590
>gb|AC079043.27| Mus musculus strain C57BL/6J chromosome 16 clone rp23-397e16, complete sequence Length = 214471 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 tgtgatcaagacccggatgcaggt 349 ||||||||||||| |||||||||| Sbjct: 25654 tgtgatcaagaccaggatgcaggt 25631
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 gaggcgcaccacccaggcgggcca 111 |||||||||| ||||||||||||| Sbjct: 2288827 gaggcgcaccgcccaggcgggcca 2288850
>emb|X96924.1|HAMCTP H.sapiens gene encoding mitochondrial citrate transport protein Length = 2770 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 tgtgatcaagacccggatgcaggt 349 |||||| ||||||||||||||||| Sbjct: 1743 tgtgattaagacccggatgcaggt 1766
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 gctgcgtgaccgtggcgctc 314 |||||||||||||||||||| Sbjct: 2004277 gctgcgtgaccgtggcgctc 2004258
>gb|L77569.1|HUMDGCRTEL Homo sapiens DiGeorge syndrome critical region, telomeric end Length = 47500 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 tgtgatcaagacccggatgcaggt 349 |||||| ||||||||||||||||| Sbjct: 1162 tgtgattaagacccggatgcaggt 1139
>gb|AC140415.3| Mus musculus BAC clone RP23-127A20 from 13, complete sequence Length = 221245 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 aagctctatgtggttggggc 283 |||||||||||||||||||| Sbjct: 58158 aagctctatgtggttggggc 58139
>gb|AC087064.27| Mus musculus strain C57BL/6J chromosome 16 clone rp23-428i4, complete sequence Length = 211848 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 tgtgatcaagacccggatgcaggt 349 ||||||||||||| |||||||||| Sbjct: 209103 tgtgatcaagaccaggatgcaggt 209126
>gb|AC078895.34| Mus musculus strain C57BL/6J chromosome 16 clone rp23-372h6, complete sequence Length = 211256 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 tgtgatcaagacccggatgcaggt 349 ||||||||||||| |||||||||| Sbjct: 60819 tgtgatcaagaccaggatgcaggt 60842
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 accacggaagcggaggcgca 95 |||||||||||||||||||| Sbjct: 646227 accacggaagcggaggcgca 646246 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,809,824 Number of Sequences: 3902068 Number of extensions: 4809824 Number of successful extensions: 90526 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90157 Number of HSP's gapped (non-prelim): 359 length of query: 697 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 674 effective length of database: 17,143,297,704 effective search space: 11554582652496 effective search space used: 11554582652496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
