ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2p21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease in... 706 0.0
2gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown funct... 321 9e-85
3gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-r... 319 4e-84
4gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds 96 1e-16
5gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown funct... 94 4e-16
6gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sa... 52 0.001
7ref|NM_184249.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.084
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
9dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
10gb|AY618464.1| Glomerella graminicola isolate 43 18S ribosomal R... 42 1.3
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
12dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
13dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
14emb|Z94139.1| Plectosphaerella sp. C99 partial 18S rRNA gene, st... 42 1.3
15emb|AL626775.11| Mouse DNA sequence from clone RP23-325M14 on ch... 42 1.3
16ref|XM_580317.2| PREDICTED: Bos taurus collagen, type IV, alpha ... 40 5.2
17gb|AC154691.3| Mus musculus BAC clone RP24-336F24 from chromosom... 40 5.2
18gb|AC073621.20| Homo sapiens chromosome 17, clone CTD-3073J20, c... 40 5.2
19gb|AC161614.4| Pan troglodytes BAC clone CH251-575E11 from chrom... 40 5.2
20dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.2
21gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene... 40 5.2
22dbj|AP000841.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 5.2
23gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.2
24gb|AC122763.9| Mus musculus chromosome 19, clone RP24-68F2, comp... 40 5.2
25dbj|AP003150.1| Mus musculus genomic DNA, chromosome 16q clone:R... 40 5.2
26dbj|AP003148.1| Mus musculus genomic DNA, chromosome 16q clone:R... 40 5.2
27emb|AL670290.13| Mouse DNA sequence from clone RP23-309M8 on chr... 40 5.2 
>emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease inhibitor
          Length = 498

 Score =  706 bits (356), Expect = 0.0
 Identities = 384/390 (98%), Gaps = 5/390 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctggtcatgggagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12  atgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctggtcatgggagtc 71

                                                                       
Query: 61  ctctcgcacgtgaacgccgactatttccccacgtgctgcaacaactgcaggtccttctcc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  ctctcgcacgtgaacgccgtctatttccccacgtgctgcaacaactgcaggtccttctcc 131

                                                                       
Query: 121 ggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgctcggcgtgccgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgctcggcgtgccgc 191

                                                                       
Query: 181 gtggtgaccacgaacccccagacgttccgctgcgccgacatgaaagccaccgtcgacggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gtggtgaccacgaacccccagacgttccgctgcgccgacatgaaagccaccgtcgacggc 251

                                                                       
Query: 241 acctgcggcgggccatgcaagaagtactgatcggctcaggctcacatgagactattgttc 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 252 acctgcggcgggccatgcaagaagtactgatcg-ctcaggctcacatgagactattgttc 310

                                                                       
Query: 301 cgcttggcgcctaaaataaaagctcggatgagatgaccggactcatcttgcctatgcgtg 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 -gcttggcgcctaaaataaaagctcggatgagatgaccggactcatcttgcctatgcgtg 369

                                         
Query: 361 tgtgtgtggccaacaa---tatgtatactg 387
           ||||||||||||||||   |||||||||||
Sbjct: 370 tgtgtgtggccaacaacaatatgtatactg 399
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>gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown function (wali5) mRNA,
           complete cds
          Length = 520

 Score =  321 bits (162), Expect = 9e-85
 Identities = 246/274 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctggtcatgggagtc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 73  atgaagggcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggactc 132

                                                                       
Query: 61  ctctcgcacgtgaacgccgactatttccccacgtgctgcaacaactgcaggtccttctcc 120
           ||||| |||||||||||||| | |||||||| ||||||||||||||||||||||||||| 
Sbjct: 133 ctctcacacgtgaacgccgattttttccccaagtgctgcaacaactgcaggtccttctcg 192

                                                                       
Query: 121 ggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgctcggcgtgccgc 180
           |||||||||||||||||||||||||| ||  |||| |||   ||||||||||||||||||
Sbjct: 193 ggggtcgacgtctgcgacgacgcccaccccaagtgtccccagggctgctcggcgtgccgc 252

                                                                       
Query: 181 gtggtgaccacgaacccccagacgttccgctgcgccgacatgaaagccaccgtcgacggc 240
           |||||| | |||| |||| | | ||  |||||||| || |||||| ||||||||||||||
Sbjct: 253 gtggtgtcgacgagccccgaaatgtggcgctgcgcggatatgaaatccaccgtcgacggc 312

                                             
Query: 241 acctgcggcgggccatgcaagaagtactgatcgg 274
           |||||||| || || |||||||||||||||||||
Sbjct: 313 acctgcggtggaccctgcaagaagtactgatcgg 346



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 312 taaaataaaagctcggatgagatgaccggactcatcttgcctatgcgtgtgtgtgtggcc 371
           |||||||||||||| |  ||||||| | |  ||||| |||||||||||||||||||||||
Sbjct: 378 taaaataaaagctcaggcgagatgagcagcgtcatcgtgcctatgcgtgtgtgtgtggcc 437

                 
Query: 372 aacaat 377
           ||||||
Sbjct: 438 aacaat 443
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>gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-related protein
           (wrsi5-1) mRNA, complete cds
          Length = 608

 Score =  319 bits (161), Expect = 4e-84
 Identities = 247/275 (89%), Gaps = 3/275 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctggtcatgggagtc 60
           |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||  ||
Sbjct: 87  atgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatc 146

                                                                       
Query: 61  ctctcgcacgtgaacgccgactatttccccacgtgctgcaacaactgcaggtccttctcc 120
           ||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||||||||
Sbjct: 147 ctctcacacgtgaacgccgacttcttccccaagtgctgcaacaactgcaggtccttctcc 206

                                                                       
Query: 121 ggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgctcggcgtgccgc 180
           |||||||||||||||||||||||||| || ||||||||||  ||||||||||| ||||||
Sbjct: 207 ggggtcgacgtctgcgacgacgcccacccccagtgccccaagggctgctcggcctgccgc 266

                                                                       
Query: 181 gtggtgaccacgaaccc---ccagacgttccgctgcgccgacatgaaagccaccgtcgac 237
           ||||||||  | | |||   | |||||||||| ||||||||||||||   ||||||||| 
Sbjct: 267 gtggtgacgcccagccctcacaagacgttccggtgcgccgacatgaagagcaccgtcgat 326

                                              
Query: 238 ggcacctgcggcgggccatgcaagaagtactgatc 272
           ||||||||||||||||||||||| ||| |||||||
Sbjct: 327 ggcacctgcggcgggccatgcaaaaagcactgatc 361



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 ggccaacaatatgtatactg 387
           ||||||||||||||||||||
Sbjct: 463 ggccaacaatatgtatactg 482
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>gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds
          Length = 585

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 110/130 (84%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                       
Query: 15  gctcgcggcgattctgatcctccaggccgtcctggtcatgggagtcctctcgcacgtgaa 74
           ||||| |||||| ||||| |||||||||||||||||||||||| ||||||| || | |||
Sbjct: 90  gctcgtggcgatcctgattctccaggccgtcctggtcatgggaatcctctcacaggcgaa 149

                                                                       
Query: 75  cgccgactatttccccacgtgctgcaacaactgcaggtccttctccggggtcgacgtctg 134
           |||||   | ||||| |  |||||| |||||||||||| |||||| |||| ||  |||||
Sbjct: 150 cgccg---agttcccgaaatgctgcgacaactgcaggttcttctcgggggccgtggtctg 206

                     
Query: 135 cgacgacgcc 144
           ||||||||||
Sbjct: 207 cgacgacgcc 216
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>gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown function (wali3) mRNA,
           complete cds
          Length = 564

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 100/117 (85%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgatcctccaggccgtcctggtcatgggagtcctctcgcacgtgaacgccgactatttc 87
           |||||||| ||||||||||||||||||||| ||||||| || | ||||||||   | |||
Sbjct: 82  ctgatccttcaggccgtcctggtcatgggaatcctctcacaggcgaacgccg---agttc 138

                                                                    
Query: 88  cccacgtgctgcaacaactgcaggtccttctccggggtcgacgtctgcgacgacgcc 144
           |||| ||||||| |||||||||||| |||||| |||| ||  |||||||| ||||||
Sbjct: 139 cccaagtgctgcgacaactgcaggttcttctcgggggccgtggtctgcgatgacgcc 195
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>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete
             sequence; splicing factor SF2-like protein (SF2) and
             universal stress protein (USP1) genes and Hv
             receptor-kinase-like pseudogene, complete cds; and
             retrotransposons Sandra6 and Sandra7, complete sequence
          Length = 82293

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 32    tcctccaggccgtcctggtcatgggagtcctctc 65
             ||||||||||| |||||||||||||| |||||||
Sbjct: 71810 tcctccaggccatcctggtcatgggaatcctctc 71843



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 153   gtgccccaccggctgctcggcgtgccgc 180
             ||||||| ||||||||||||||||||||
Sbjct: 72072 gtgccccgccggctgctcggcgtgccgc 72099
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>ref|NM_184249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 306

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 34 ctccaggccgtcctggtcatggg 56
          |||||||||||||||||||||||
Sbjct: 34 ctccaggccgtcctggtcatggg 56
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 34      ctccaggccgtcctggtcatggg 56
               |||||||||||||||||||||||
Sbjct: 1757697 ctccaggccgtcctggtcatggg 1757675
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>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504H10
          Length = 143515

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 34     ctccaggccgtcctggtcatggg 56
              |||||||||||||||||||||||
Sbjct: 100040 ctccaggccgtcctggtcatggg 100018
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>gb|AY618464.1| Glomerella graminicola isolate 43 18S ribosomal RNA gene, partial
           sequence
          Length = 518

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 108 caggtccttctccggggtcga 128
           |||||||||||||||||||||
Sbjct: 156 caggtccttctccggggtcga 176
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 359     tgtgtgtgtggccaacaatat 379
               |||||||||||||||||||||
Sbjct: 1152429 tgtgtgtgtggccaacaatat 1152449
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>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0660D08
          Length = 146915

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 359    tgtgtgtgtggccaacaatat 379
              |||||||||||||||||||||
Sbjct: 128652 tgtgtgtgtggccaacaatat 128672
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>dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0542E10
          Length = 146196

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 359  tgtgtgtgtggccaacaatat 379
            |||||||||||||||||||||
Sbjct: 4382 tgtgtgtgtggccaacaatat 4402
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>emb|Z94139.1| Plectosphaerella sp. C99 partial 18S rRNA gene, strain C99
          Length = 421

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 108 caggtccttctccggggtcga 128
           |||||||||||||||||||||
Sbjct: 343 caggtccttctccggggtcga 323
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>emb|AL626775.11| Mouse DNA sequence from clone RP23-325M14 on chromosome 4, complete
              sequence
          Length = 190641

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 46     ctggtcatgggagtcctctcg 66
              |||||||||||||||||||||
Sbjct: 102410 ctggtcatgggagtcctctcg 102390
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>ref|XM_580317.2| PREDICTED: Bos taurus collagen, type IV, alpha 1 (COL4A1), mRNA
          Length = 4920

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 148  ccgcagtgccccaccggctg 167
            ||||||||||||||||||||
Sbjct: 4690 ccgcagtgccccaccggctg 4709
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>gb|AC154691.3| Mus musculus BAC clone RP24-336F24 from chromosome 16, complete
             sequence
          Length = 178904

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   tgcctatgcgtgtgtgtgtg 368
             ||||||||||||||||||||
Sbjct: 63274 tgcctatgcgtgtgtgtgtg 63255
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>gb|AC073621.20| Homo sapiens chromosome 17, clone CTD-3073J20, complete sequence
          Length = 141048

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    tgcctatgcgtgtgtgtgtg 368
              ||||||||||||||||||||
Sbjct: 109702 tgcctatgcgtgtgtgtgtg 109683
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>gb|AC161614.4| Pan troglodytes BAC clone CH251-575E11 from chromosome unknown,
             complete sequence
          Length = 172771

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   tatgcgtgtgtgtgtggcca 372
             ||||||||||||||||||||
Sbjct: 67874 tatgcgtgtgtgtgtggcca 67893
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    gttccgctgcgccgacatga 223
              ||||||||||||||||||||
Sbjct: 807673 gttccgctgcgccgacatga 807692
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>gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene, partial cds; AarF (aarF),
            panthotenate metabolism flavoprotein (dfp),
            deoxyuridine-triphosphatase (dut), putative sensor
            protein (bdfA), GalF-like (galF), hypothetical protein
            genes, complete cds; putative helicase 2 gene, partial
            cds; and unknown genes
          Length = 13289

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttccgctgcgccgacatga 223
            ||||||||||||||||||||
Sbjct: 8366 gttccgctgcgccgacatga 8347
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>dbj|AP000841.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-89J9, complete
             sequence
          Length = 103177

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   tgcctatgcgtgtgtgtgtg 368
             ||||||||||||||||||||
Sbjct: 15070 tgcctatgcgtgtgtgtgtg 15051
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    ccggctgctcggcgtgccgc 180
              ||||||||||||||||||||
Sbjct: 369417 ccggctgctcggcgtgccgc 369398
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>gb|AC122763.9| Mus musculus chromosome 19, clone RP24-68F2, complete sequence
          Length = 176325

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    tgcctatgcgtgtgtgtgtg 368
              ||||||||||||||||||||
Sbjct: 134621 tgcctatgcgtgtgtgtgtg 134602
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>dbj|AP003150.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-215C1, complete
              sequences
          Length = 150724

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 349    tgcctatgcgtgtgtgtgtg 368
              ||||||||||||||||||||
Sbjct: 127465 tgcctatgcgtgtgtgtgtg 127484
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>dbj|AP003148.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-190J24, complete
            sequences
          Length = 172173

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 349  tgcctatgcgtgtgtgtgtg 368
            ||||||||||||||||||||
Sbjct: 9236 tgcctatgcgtgtgtgtgtg 9255
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>emb|AL670290.13| Mouse DNA sequence from clone RP23-309M8 on chromosome 4, complete
              sequence
          Length = 174638

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    tgcctatgcgtgtgtgtgtg 368
              ||||||||||||||||||||
Sbjct: 113003 tgcctatgcgtgtgtgtgtg 112984


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,090,715
Number of Sequences: 3902068
Number of extensions: 12090715
Number of successful extensions: 109907
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109687
Number of HSP's gapped (non-prelim): 216
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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