ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3a10 |
|---|---|
| Clone Library Name | barley_pub |
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 281 bits (719), Expect = 8e-76 Identities = 137/172 (79%), Positives = 157/172 (91%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +AK++VGNLPYDVDSE LA+LFEQAGVVE++EVIYNR+TDQSRGFGFVTMST+EEAEKAV Sbjct: 135 DAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 194 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 EM++RYDVNGRLLTVNKAA RG R ERPPR S+RIYVGN+PW +DD+RL +LFSEHG Sbjct: 195 EMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHG 254 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 KVV ARVVYDR+TGRSRGFGFVTMAS+ E+ DAIA LDGQSL+GR +RVNVA Sbjct: 255 KVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306 Score = 75.5 bits (184), Expect = 8e-14 Identities = 36/82 (43%), Positives = 52/82 (63%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++YVGN+P+ +D RL QLF + G V + V+Y+RET +SRGFGFVTM++ E A+ Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290 Query: 195 FHRYDVNGRLLTVNKAAPRGAR 260 ++GR + VN A R R Sbjct: 291 LDGQSLDGRTIRVNVAEDRSRR 312
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 268 bits (684), Expect = 9e-72 Identities = 130/172 (75%), Positives = 155/172 (90%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 EAK++VGNL YDV+S+ LA LFEQAG VE++EVIYNRETDQSRGFGFVTMS+++EAE AV Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 E F+RYD+NGRLLTVNKAAPRG+R ER PR +FR+YVGNLPW VD+ RL +LFSEHG Sbjct: 209 EKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHG 268 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 KVV+ARVVYDR+TGRSRGFGFVTM+ +EL++AI+ALDGQ+LEGRA+RVNVA Sbjct: 269 KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320 Score = 86.7 bits (213), Expect = 4e-17 Identities = 44/88 (50%), Positives = 59/88 (67%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +VYVGNLP+DVD+ RL QLF + G V + V+Y+RET +SRGFGFVTMS ++E +A+ Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPR 278 ++ GR + VN A ERPPR Sbjct: 305 LDGQNLEGRAIRVNVAE------ERPPR 326
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 266 bits (679), Expect = 3e-71 Identities = 124/172 (72%), Positives = 156/172 (90%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +AK++VGNLPYD+DSE LAQLF+QAGVVE++EVIYNRETD+SRGFGFVTMST+EEA+KAV Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 155 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 E++ +YD+NGRLLTVNKAAPRG+R ER PR ++RIYVGN+PW +DD+RL ++FSEHG Sbjct: 156 ELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHG 215 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 KVV ARVV+DR++GRSRGFGFVTM+S+ E+ +AIA LDGQ+L+GR +RVN A Sbjct: 216 KVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267 Score = 75.1 bits (183), Expect = 1e-13 Identities = 35/82 (42%), Positives = 54/82 (65%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++YVGN+P+D+D RL Q+F + G V + V+++RE+ +SRGFGFVTMS+ E +A+ Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251 Query: 195 FHRYDVNGRLLTVNKAAPRGAR 260 ++GR + VN A R R Sbjct: 252 LDGQTLDGRTIRVNAAEERPRR 273
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 257 bits (657), Expect = 1e-68 Identities = 127/172 (73%), Positives = 151/172 (87%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 EAK++VGNLPYDVDSE+LA +F+ AGVVE++EVIYNRETD+SRGFGFVTMST+EEAEKAV Sbjct: 54 EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 113 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 E+ + YD++GR LTVNKAAPRG+ P D S R+YVGNLPW VD SRL +LFSEHG Sbjct: 114 ELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHG 173 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 KVV ARVV DR+TGRSRGFGFVTM+S+ E++DAIAALDGQ+L+GRA+RVNVA Sbjct: 174 KVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225 Score = 77.8 bits (190), Expect = 2e-14 Identities = 40/82 (48%), Positives = 53/82 (64%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +VYVGNLP+DVD+ RL QLF + G V + V+ +RET +SRGFGFVTMS+ E A+ Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209 Query: 195 FHRYDVNGRLLTVNKAAPRGAR 260 ++GR + VN A R R Sbjct: 210 LDGQTLDGRAVRVNVAEERPRR 231
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 186 bits (473), Expect = 3e-47 Identities = 100/191 (52%), Positives = 130/191 (68%), Gaps = 19/191 (9%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + K++VGNLP++VDS +LAQLFE AG VE+ EVIY++ T +SRGFGFVTMS++ E E A Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVE---RPPRDS----------------GSSFRIYVG 311 + F+ Y+++GR L VN P R + R PR S GS R+YVG Sbjct: 150 QQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVG 209 Query: 312 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 491 NL W VDD L LFSE GKVV+ARV+YDRD+GRS+GFGFVT S +E+ +AI +LDG Sbjct: 210 NLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269 Query: 492 LEGRALRVNVA 524 L+GR +RV+ A Sbjct: 270 LDGRQIRVSEA 280 Score = 84.0 bits (206), Expect = 2e-16 Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 2/85 (2%) Frame = +3 Query: 270 PPRDSGSS--FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMA 443 PP++ S +++VGNLP+ VD ++L +LF G V V+YD+ TGRSRGFGFVTM+ Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 140 Query: 444 SQEELDDAIAALDGQSLEGRALRVN 518 S E++ A +G L+GR LRVN Sbjct: 141 SVSEVEAAAQQFNGYELDGRPLRVN 165 Score = 67.8 bits (164), Expect = 2e-11 Identities = 33/82 (40%), Positives = 52/82 (63%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +VYVGNL + VD L LF + G V + VIY+R++ +S+GFGFVT + +E + A++ Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264 Query: 195 FHRYDVNGRLLTVNKAAPRGAR 260 D++GR + V++A R R Sbjct: 265 LDGADLDGRQIRVSEAEARPPR 286
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 186 bits (472), Expect = 3e-47 Identities = 99/179 (55%), Positives = 125/179 (69%), Gaps = 7/179 (3%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + K++VGNLP+ DS LA+LFE+AG VE+ EVIY++ T +SRGFGFVTMS+ EE E A Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSG-------SSFRIYVGNLPWQVDDSRLV 347 + F+ Y+++GR L VN P R R SS R+YVGNL W VD L Sbjct: 146 QQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALE 205 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 LFSE GKVVDA+VVYDRD+GRSRGFGFVT +S EE+++AI +LDG L GRA+RV+ A Sbjct: 206 TLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264 Score = 86.7 bits (213), Expect = 4e-17 Identities = 42/81 (51%), Positives = 55/81 (67%) Frame = +3 Query: 276 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 455 R+ +I+VGNLP+ D + L ELF G V V+YD+ TGRSRGFGFVTM+S+EE Sbjct: 81 RNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 456 LDDAIAALDGQSLEGRALRVN 518 ++ A +G L+GRALRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161 Score = 75.5 bits (184), Expect = 8e-14 Identities = 37/82 (45%), Positives = 53/82 (64%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +VYVGNL + VD + L LF + G V ++V+Y+R++ +SRGFGFVT S+ EE A+E Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248 Query: 195 FHRYDVNGRLLTVNKAAPRGAR 260 D+NGR + V+ A R R Sbjct: 249 LDGVDLNGRAIRVSPAEARPPR 270
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 183 bits (464), Expect = 3e-46 Identities = 103/199 (51%), Positives = 132/199 (66%), Gaps = 27/199 (13%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + K++VGNLP+ VDS LA LFE+AG VE+ EVIY++ T +SRGFGFVTMST EE E A Sbjct: 86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAE 145 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPP--------------RDSGSSF---------- 296 + F+ Y+++GR + VN A P A+ E RD SSF Sbjct: 146 QQFNGYEIDGRAIRVN-AGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVD 204 Query: 297 ---RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 467 R+YVGNL W VDD L ELFSE G VVDA+VVYDRD+GRSRGFGFVT +S +E++DA Sbjct: 205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDA 264 Query: 468 IAALDGQSLEGRALRVNVA 524 I +L+G L+GR++RV+ A Sbjct: 265 IDSLNGVDLDGRSIRVSAA 283 Score = 69.3 bits (168), Expect = 6e-12 Identities = 34/82 (41%), Positives = 54/82 (65%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +VYVGNL + VD L +LF + G V ++V+Y+R++ +SRGFGFVT S+ +E A++ Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267 Query: 195 FHRYDVNGRLLTVNKAAPRGAR 260 + D++GR + V+ A R R Sbjct: 268 LNGVDLDGRSIRVSAAEERPRR 289
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 181 bits (460), Expect = 8e-46 Identities = 102/199 (51%), Positives = 132/199 (66%), Gaps = 27/199 (13%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + K++VGNLP+ VDS LA LFE+AG VE+ EVIY++ + +SRGFGFVTMST EE E A Sbjct: 87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAE 146 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPP--------------RDSGSSF---------- 296 + F+ Y+++GR + VN A P A+ E RD SSF Sbjct: 147 QQFNGYEIDGRAIRVN-AGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVD 205 Query: 297 ---RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 467 R+YVGNL W VDD L ELFSE G VVDA+VVYDRD+GRSRGFGFVT +S +E++DA Sbjct: 206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDA 265 Query: 468 IAALDGQSLEGRALRVNVA 524 I +L+G L+GR++RV+ A Sbjct: 266 IDSLNGIDLDGRSIRVSAA 284 Score = 69.7 bits (169), Expect = 5e-12 Identities = 34/82 (41%), Positives = 54/82 (65%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +VYVGNL + VD L +LF + G V ++V+Y+R++ +SRGFGFVT S+ +E A++ Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268 Query: 195 FHRYDVNGRLLTVNKAAPRGAR 260 + D++GR + V+ A R R Sbjct: 269 LNGIDLDGRSIRVSAAEERPRR 290
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 181 bits (460), Expect = 8e-46 Identities = 98/185 (52%), Positives = 126/185 (68%), Gaps = 13/185 (7%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + K++VGNL + DS LA+LFE+AG VE+ EVIY++ T +SRGFGFVTMS+ EE E A Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS-------------SFRIYVGNLPWQV 329 + F+ Y+++GR L VN P R R++ S S R+YVGNL W V Sbjct: 146 QQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGV 205 Query: 330 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 D L LFSE GKVVDA+VVYDRD+GRSRGFGFVT +S EE+++AI +LDG L GRA+ Sbjct: 206 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 265 Query: 510 RVNVA 524 RV+ A Sbjct: 266 RVSPA 270 Score = 82.8 bits (203), Expect = 5e-16 Identities = 41/81 (50%), Positives = 54/81 (66%) Frame = +3 Query: 276 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 455 R+ +I+VGNL + D + L ELF G V V+YD+ TGRSRGFGFVTM+S+EE Sbjct: 81 RNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 456 LDDAIAALDGQSLEGRALRVN 518 ++ A +G L+GRALRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161 Score = 75.5 bits (184), Expect = 8e-14 Identities = 37/82 (45%), Positives = 53/82 (64%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +VYVGNL + VD + L LF + G V ++V+Y+R++ +SRGFGFVT S+ EE A+E Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254 Query: 195 FHRYDVNGRLLTVNKAAPRGAR 260 D+NGR + V+ A R R Sbjct: 255 LDGVDLNGRAIRVSPAEARPPR 276
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 143 bits (361), Expect = 2e-34 Identities = 73/179 (40%), Positives = 113/179 (63%), Gaps = 9/179 (5%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++YVGNLP+ + S +L+++F +AG V E++Y+R TD+SRGF FVTM ++EEA++A+ + Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 195 FHRYDVNGRLLTVN-KAAPRGARVERPPRDSGSSF--------RIYVGNLPWQVDDSRLV 347 F V GR + VN PRG E S++ ++YV NL W + L Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 234 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + F++ + A+V+YDR +GRSRGFGF+T +S E ++ A+ ++ LEGR LR+NVA Sbjct: 235 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293 Score = 88.2 bits (217), Expect = 1e-17 Identities = 48/123 (39%), Positives = 67/123 (54%) Frame = +3 Query: 150 VTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQV 329 + +ST VE+ D L+ + + ER +S R+YVGNLP+ + Sbjct: 66 IFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSM 125 Query: 330 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 S+L E+F+E G V + +VYDR T RSRGF FVTM S EE +AI DG + GR + Sbjct: 126 TSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTV 185 Query: 510 RVN 518 +VN Sbjct: 186 KVN 188 Score = 56.6 bits (135), Expect = 4e-08 Identities = 31/87 (35%), Positives = 49/87 (56%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+YV NL + + S+ L F ++VIY+R + +SRGFGF+T S+ E A++ Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPP 275 + ++ GR L +N A + A V PP Sbjct: 278 MNEVELEGRPLRLNVAGQK-APVSSPP 303
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 126 bits (316), Expect = 4e-29 Identities = 65/176 (36%), Positives = 110/176 (62%), Gaps = 6/176 (3%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++YVGN+P +++++ L + E+ G +E++EV+Y++ + +SR FGFVTM T+E+A +E Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144 Query: 195 FHRYDVNGRLLTVN--KAAPRGARVERPPRDSG----SSFRIYVGNLPWQVDDSRLVELF 356 + ++ GR + VN + G + + S +++Y+GNL V + L + F Sbjct: 145 LNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFF 204 Query: 357 SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 SE GKV+ A+V T +S GFGFV+ +S+EE++ AI AL+ LEG+ +RVN A Sbjct: 205 SEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260 Score = 68.2 bits (165), Expect = 1e-11 Identities = 32/81 (39%), Positives = 51/81 (62%) Frame = +3 Query: 279 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 458 D + R+YVGN+P +++ L + EHG + A V+YD+ +GRSR FGFVTM + E+ Sbjct: 79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDA 138 Query: 459 DDAIAALDGQSLEGRALRVNV 521 + I L+ + GR ++VN+ Sbjct: 139 NAVIEKLNDTEIGGRKIKVNI 159
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 103 bits (258), Expect = 2e-22 Identities = 49/81 (60%), Positives = 64/81 (79%) Frame = +3 Query: 282 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 461 SGS R+YVGNL W VDD L LF+E GKVV+ARV+YDRD+GRS+GFGFVT++S +E+ Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312 Query: 462 DAIAALDGQSLEGRALRVNVA 524 AI +L+G L+GR +RV+ A Sbjct: 313 KAINSLNGADLDGRQIRVSEA 333 Score = 94.7 bits (234), Expect = 1e-19 Identities = 51/96 (53%), Positives = 64/96 (66%), Gaps = 3/96 (3%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + K++VGNL ++VDS +LAQLFE AG VE+ EVIY++ T +SRGFGFVTMST E E A Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVE---RPPRDSG 287 + F+ Y+ GR L VN P R E R PR G Sbjct: 158 QQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGG 193 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/74 (48%), Positives = 50/74 (67%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +++VGNL + VD ++L +LF G V V+YD+ TGRSRGFGFVTM++ E++ A Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 477 LDGQSLEGRALRVN 518 +G EGR LRVN Sbjct: 160 FNGYEFEGRPLRVN 173 Score = 71.6 bits (174), Expect = 1e-12 Identities = 34/82 (41%), Positives = 55/82 (67%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++YVGNL + VD L LF + G V + VIY+R++ +S+GFGFVT+S+ +E +KA+ Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 195 FHRYDVNGRLLTVNKAAPRGAR 260 + D++GR + V++A R R Sbjct: 318 LNGADLDGRQIRVSEAEARPPR 339
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 103 bits (257), Expect = 3e-22 Identities = 57/174 (32%), Positives = 99/174 (56%), Gaps = 5/174 (2%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 A ++VG L + +D E L + FE G V + VIY R TD+SRG+G+V AEKA++ Sbjct: 168 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 227 Query: 192 MFHRYDVNGRLL----TVNKAAPRGARVER-PPRDSGSSFRIYVGNLPWQVDDSRLVELF 356 +++GR + + +K A R ++ S S +++GNL + D + ELF Sbjct: 228 EMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELF 287 Query: 357 SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 ++HG+VV R+ +T + +GFG+V ++ E+ A+ AL G+ ++ R +R++ Sbjct: 288 AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 341 Score = 64.7 bits (156), Expect = 1e-10 Identities = 28/75 (37%), Positives = 47/75 (62%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 I+VG L W +DD L + F G V+ ARV+Y+R T RSRG+G+V ++ + AI + Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 480 DGQSLEGRALRVNVA 524 G+ ++GR + +++ Sbjct: 230 QGKEIDGRPINCDMS 244 Score = 51.2 bits (121), Expect = 2e-06 Identities = 23/78 (29%), Positives = 49/78 (62%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++GNL ++ D + + +LF + G V + + ET+Q +GFG+V S +E+A+KA++ Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328 Query: 198 HRYDVNGRLLTVNKAAPR 251 ++ R + ++ ++PR Sbjct: 329 QGEYIDNRPVRLDFSSPR 346
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 95.9 bits (237), Expect = 6e-20 Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 1/173 (0%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A VYVG L V L +LF QAG V + + +R T Q +G+GFV + E+A+ A+ Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 ++ + + G+ + VNKA+ + D G++ I++GNL ++D+ L + FS G Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNL-----DVGAN--IFIGNLDPEIDEKLLYDTFSAFG 124 Query: 369 KVVDA-RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ +++ D DTG S+G+ F+ AS + D AI A++GQ L R + V+ A Sbjct: 125 VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177 Score = 58.2 bits (139), Expect = 1e-08 Identities = 32/85 (37%), Positives = 48/85 (56%) Frame = +3 Query: 270 PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 449 P + +YVG L +V + L ELF + G VV+ + DR TG+ +G+GFV S+ Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64 Query: 450 EELDDAIAALDGQSLEGRALRVNVA 524 E+ D AI ++ L G+ +RVN A Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKA 89 Score = 45.4 bits (106), Expect = 9e-05 Identities = 21/87 (24%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVV-EVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 A +++GNL ++D + L F GV+ + +++ + +T S+G+ F+ ++ + ++ A+ Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVER 269 E + + R +TV+ A + ++ ER Sbjct: 160 EAMNGQYLCNRPITVSYAFKKDSKGER 186
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 93.6 bits (231), Expect = 3e-19 Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+ N D+D +RL ++F G +V+ + +T +SRGFGFV EEA+KAV Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 198 HRYDVNGRLLTVNKAAPRGAR----------VERPPRDSGSSFRIYVGNLPWQVDDSRLV 347 + +VNGR++ V +A R R +++ + +YV NL +DD RL Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + FS +G + A+V+ + G S+GFGFV +S EE A+ ++G+ + + L V +A Sbjct: 312 KEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Score = 86.7 bits (213), Expect = 4e-17 Identities = 54/169 (31%), Positives = 85/169 (50%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V++ NL +D++ L F G + +V+ + SRG+GFV T E A +A++ Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +N R + V R R +Y+ N +DD RL E+FS G + Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D DTGRSRGFGFV + EE A++ ++G+ + GR + V A Sbjct: 219 SVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266 Score = 67.8 bits (164), Expect = 2e-11 Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 2/170 (1%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 A +YVG+L DV L + F AG + V + T +S G+ ++ +AE+A++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 + + GR + + + +R P R SG +++ NL +D+ L + FS Sbjct: 71 TMNFEVIKGRPIRIMWS-------QRDPGLRKSGVG-NVFIKNLDESIDNKALYDTFSAF 122 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 G ++ +VV D SRG+GFV +QE + AI ++G L R + V Sbjct: 123 GNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 92.4 bits (228), Expect = 7e-19 Identities = 60/179 (33%), Positives = 100/179 (55%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+ N D+D ERL LF + G +S + E+ +S+GFGFV+ E+A+KAV+ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 198 HRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFRI---YVGNLPWQVDDSRLV 347 + ++NG+ + V +A + R E+ +D + +++ YV NL +DD RL Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + L V +A Sbjct: 312 KAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 77.4 bits (189), Expect = 2e-14 Identities = 47/169 (27%), Positives = 87/169 (51%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V NL ++++ L G + V+ + + S+G+GFV T E AE+A++ Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +NGR + V + R R + +Y+ N +DD RL +LF + G + Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ + V A Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 92.4 bits (228), Expect = 7e-19 Identities = 60/173 (34%), Positives = 96/173 (55%), Gaps = 1/173 (0%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A +YVG L V L +L QAG V + +R T +GFGFV E+A+ A+ Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 ++ + + G+ + VNKA+ + D G++ I+VGNL +VD+ L + FS G Sbjct: 72 KILNMIKLYGKPIKVNKASAHEKNM-----DVGAN--IFVGNLDPEVDEKLLYDTFSAFG 124 Query: 369 KVVDA-RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ +++ D D+G S+GF F+ AS E D A+ A++GQ L RA+ V+ A Sbjct: 125 VILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177 Score = 48.9 bits (115), Expect = 8e-06 Identities = 26/87 (29%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVV-EVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 A ++VGNL +VD + L F GV+ +V +++ + ++ S+GF F+ ++ E ++ A+ Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVER 269 E + + R +TV+ A R ++ ER Sbjct: 160 EAMNGQFLCNRAITVSYAFKRDSKGER 186
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 92.0 bits (227), Expect = 9e-19 Identities = 60/179 (33%), Positives = 101/179 (56%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+ N D+D ERL +LF + G +S + E+ +S+GFGFV+ E+A+KAV+ Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 198 HRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNLPWQVDDSRLV 347 + ++NG+ + V +A + R E+ +D + ++ +YV NL +DD RL Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + L V +A Sbjct: 312 KEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 83.2 bits (204), Expect = 4e-16 Identities = 49/169 (28%), Positives = 88/169 (52%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +N R + V + R R + +Y+ N +DD RL ELF + G + Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ + V A Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 92.0 bits (227), Expect = 9e-19 Identities = 60/179 (33%), Positives = 101/179 (56%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+ N D+D ERL +LF + G +S + E+ +S+GFGFV+ E+A+KAV+ Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 198 HRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNLPWQVDDSRLV 347 + ++NG+ + V +A + R E+ +D + ++ +YV NL +DD RL Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + L V +A Sbjct: 312 KEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 81.6 bits (200), Expect = 1e-15 Identities = 48/169 (28%), Positives = 88/169 (52%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +N R + V + + R + +Y+ N +DD RL ELF + G + Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ + V A Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 91.7 bits (226), Expect = 1e-18 Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 11/180 (6%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VYV N D D E+L + FE G + S + ++E +S+GFGFV T E AE AV+ Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKI-TSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQAL 243 Query: 198 HRYDVN-GRLLTVNKAAPRGARVERPPR----------DSGSSFRIYVGNLPWQVDDSRL 344 + D+ G+ L V +A + R + R +S +YV NL +DD RL Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303 Query: 345 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 FS +G + A+V+ D + GRS+GFGFV + E A+ L+G+ + + L V +A Sbjct: 304 RIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362 Score = 82.0 bits (201), Expect = 9e-16 Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 1/167 (0%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V++ NL +D++ + F G + +S + E S+G+GFV T E A +++ Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNI-LSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +NG+ + V K PR R + + +YV N DD +L E F +GK+ Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKIT 210 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSL-EGRALRV 515 +V+ ++ G+S+GFGFV + E + A+ AL+G+ + EG++L V Sbjct: 211 SYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV 256 Score = 67.0 bits (162), Expect = 3e-11 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 2/170 (1%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 A +YVG+LP DV+ L F AG V V + T +S G+ +V +AE+A++ Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 + +D+ V R +R P R SG +++ NL +D+ + + FS Sbjct: 62 TMN-FDL------VRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDRAIDNKAIYDTFSAF 113 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 G ++ +V D + G S+G+GFV ++E + +I ++G L G+ + V Sbjct: 114 GNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYV 162 Score = 39.3 bits (90), Expect = 0.007 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%) Frame = +3 Query: 3 RHEA----KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIE 170 RHE+ +YV NL +D +RL F G + ++V+ + E +S+GFGFV + Sbjct: 280 RHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAAS 338 Query: 171 EAEKAVEMFHRYDVNGRLL 227 EA AV ++NGR++ Sbjct: 339 EATCAVT-----ELNGRVV 352
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 91.7 bits (226), Expect = 1e-18 Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+ N D+D ERL + F Q G +S + + +SRGFGFV+ E+A+KAV+ Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAA-LSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDM 251 Query: 198 HRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNLPWQVDDSRLV 347 + D+NG+ + V +A + R E+ +D + ++ +YV NL +DD RL Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + F+ G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + L V +A Sbjct: 312 KEFTPFGSITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 84.0 bits (206), Expect = 2e-16 Identities = 50/169 (29%), Positives = 88/169 (52%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +N R + V + R R + +Y+ N +DD RL E F ++G + Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAAL 218 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D D G+SRGFGFV+ E+ A+ ++G+ L G+A+ V A Sbjct: 219 SVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA 266
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 91.3 bits (225), Expect = 1e-18 Identities = 60/179 (33%), Positives = 100/179 (55%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+ N D+D ERL LF + G +S + E+ +S+GFGFV+ E+A+KAV+ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 198 HRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNLPWQVDDSRLV 347 + ++NG+ + V +A + R E+ +D + ++ +YV NL +DD RL Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + L V +A Sbjct: 312 KEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 82.0 bits (201), Expect = 9e-16 Identities = 48/169 (28%), Positives = 88/169 (52%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +N R + V + R R + +Y+ N +DD RL +LF + G + Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ + V A Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 91.3 bits (225), Expect = 1e-18 Identities = 60/179 (33%), Positives = 100/179 (55%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+ N D+D ERL LF + G +S + E+ +S+GFGFV+ E+A+KAV+ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 198 HRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNLPWQVDDSRLV 347 + ++NG+ + V +A + R E+ +D + ++ +YV NL +DD RL Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + L V +A Sbjct: 312 KEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 82.0 bits (201), Expect = 9e-16 Identities = 48/169 (28%), Positives = 88/169 (52%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A+E Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +N R + V + R R + +Y+ N +DD RL +LF + G + Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ + V A Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 90.9 bits (224), Expect = 2e-18 Identities = 52/171 (30%), Positives = 91/171 (53%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + + V LP ++ E L LF G +E +++ ++ T QS G+GFV ++AEKA+ Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + + + + V+ A P A + RD+ +YV LP + L +LFS++G Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQLFSQYG 149 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 +++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 60.5 bits (145), Expect = 3e-09 Identities = 32/82 (39%), Positives = 50/82 (60%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + + Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328 Query: 453 ELDDAIAALDGQSLEGRALRVN 518 E AIA+L+G L R L+V+ Sbjct: 329 EAAMAIASLNGYRLGDRVLQVS 350 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V NL D D L Q+F G V +VI + T++ +GFGFVTM+ +EA A+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 198 HRYDVNGRLLTVN 236 + Y + R+L V+ Sbjct: 338 NGYRLGDRVLQVS 350 Score = 49.7 bits (117), Expect = 5e-06 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Frame = +3 Query: 273 PRDSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 440 P DSG S + V LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 28 PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 441 ASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ + AI L+G L+ + ++V+ A Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 90.9 bits (224), Expect = 2e-18 Identities = 52/171 (30%), Positives = 91/171 (53%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + + V LP ++ E L LF G +E +++ ++ T QS G+GFV ++AEKA+ Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + + + + V+ A P A + RD+ +YV LP + L +LFS++G Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQLFSQYG 149 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 +++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 60.5 bits (145), Expect = 3e-09 Identities = 32/82 (39%), Positives = 50/82 (60%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + + Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328 Query: 453 ELDDAIAALDGQSLEGRALRVN 518 E AIA+L+G L R L+V+ Sbjct: 329 EAAMAIASLNGYRLGDRVLQVS 350 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V NL D D L Q+F G V +VI + T++ +GFGFVTM+ +EA A+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 198 HRYDVNGRLLTVN 236 + Y + R+L V+ Sbjct: 338 NGYRLGDRVLQVS 350 Score = 49.7 bits (117), Expect = 5e-06 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Frame = +3 Query: 273 PRDSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 440 P DSG S + V LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 28 PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 441 ASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ + AI L+G L+ + ++V+ A Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 90.9 bits (224), Expect = 2e-18 Identities = 52/171 (30%), Positives = 91/171 (53%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + + V LP ++ E L LF G +E +++ ++ T QS G+GFV ++AEKA+ Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + + + + V+ A P A + RD+ +YV LP + L +LFS++G Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQLFSQYG 149 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 +++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 60.5 bits (145), Expect = 3e-09 Identities = 32/82 (39%), Positives = 50/82 (60%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + + Sbjct: 270 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 329 Query: 453 ELDDAIAALDGQSLEGRALRVN 518 E AIA+L+G L R L+V+ Sbjct: 330 EAAMAIASLNGYRLGDRVLQVS 351 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V NL D D L Q+F G V +VI + T++ +GFGFVTM+ +EA A+ Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 198 HRYDVNGRLLTVN 236 + Y + R+L V+ Sbjct: 339 NGYRLGDRVLQVS 351 Score = 49.7 bits (117), Expect = 5e-06 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Frame = +3 Query: 273 PRDSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 440 P DSG S + V LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 28 PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 441 ASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ + AI L+G L+ + ++V+ A Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 89.7 bits (221), Expect = 4e-18 Identities = 51/171 (29%), Positives = 90/171 (52%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + + V LP ++ E LF G +E +++ ++ T QS G+GFV ++AEKA+ Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + + + + V+ A P A + RD+ +YV LP + L +LFS++G Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQLFSQYG 149 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 +++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 150 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 200 Score = 60.1 bits (144), Expect = 4e-09 Identities = 33/82 (40%), Positives = 51/82 (62%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P +G+ + I+V NL D+S L +LF G V + +V+ D +T + +GFGFVTM + + Sbjct: 283 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 342 Query: 453 ELDDAIAALDGQSLEGRALRVN 518 E AIA+L+G L R L+V+ Sbjct: 343 EAAMAIASLNGYRLGDRVLQVS 364 Score = 50.4 bits (119), Expect = 3e-06 Identities = 28/73 (38%), Positives = 42/73 (57%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V NL D D L QLF G V +VI + T++ +GFGFVTM+ +EA A+ Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 198 HRYDVNGRLLTVN 236 + Y + R+L V+ Sbjct: 352 NGYRLGDRVLQVS 364 Score = 45.8 bits (107), Expect = 7e-05 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = +3 Query: 288 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 467 S + V LP + LF G++ ++V D+ TG+S G+GFV ++ + A Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96 Query: 468 IAALDGQSLEGRALRVNVA 524 I L+G L+ + ++V+ A Sbjct: 97 INTLNGLRLQTKTIKVSYA 115
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 89.7 bits (221), Expect = 4e-18 Identities = 50/171 (29%), Positives = 91/171 (53%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + + V LP ++ + LF G +E +++ ++ T QS G+GFV S +A+KA+ Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + + + + V+ A P A + RD+ +YV LP + + +LFS++G Sbjct: 98 NTLNGLKLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMSQKEMEQLFSQYG 149 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 +++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G A + V Sbjct: 150 RIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200 Score = 60.1 bits (144), Expect = 4e-09 Identities = 32/79 (40%), Positives = 50/79 (63%) Frame = +3 Query: 282 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 461 +G+ + I+V NL + D+S L +LF G V + +V+ D T + +GFGFVTM + +E Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339 Query: 462 DAIAALDGQSLEGRALRVN 518 AIA+L+G L R L+V+ Sbjct: 340 MAIASLNGYRLGERVLQVS 358 Score = 49.3 bits (116), Expect = 6e-06 Identities = 27/95 (28%), Positives = 44/95 (46%) Frame = +3 Query: 240 AAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSR 419 A P G + S + V LP + LF G + ++V D+ TG+S Sbjct: 21 ALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSL 80 Query: 420 GFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 G+GFV + + D AI L+G L+ + ++V+ A Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V NL + D L QLF G V +VI + T++ +GFGFVTM+ +EA A+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 198 HRYDVNGRLLTVN 236 + Y + R+L V+ Sbjct: 346 NGYRLGERVLQVS 358
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 89.7 bits (221), Expect = 4e-18 Identities = 51/163 (31%), Positives = 88/163 (53%) Frame = +3 Query: 33 LPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDV 212 LP ++ E L LF G +E +++ ++ T QS G+GFV ++AEKA+ + + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 213 NGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVV 392 + + V+ A P A + RD+ +YV LP + L +LFS++G+++ +R++ Sbjct: 106 QTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157 Query: 393 YDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 60.5 bits (145), Expect = 3e-09 Identities = 32/82 (39%), Positives = 50/82 (60%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + + Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328 Query: 453 ELDDAIAALDGQSLEGRALRVN 518 E AIA+L+G L R L+V+ Sbjct: 329 EAAMAIASLNGYRLGDRVLQVS 350 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V NL D D L Q+F G V +VI + T++ +GFGFVTM+ +EA A+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 198 HRYDVNGRLLTVN 236 + Y + R+L V+ Sbjct: 338 NGYRLGDRVLQVS 350 Score = 47.0 bits (110), Expect = 3e-05 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%) Frame = +3 Query: 273 PRDSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 440 P DSG S + LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 28 PVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 441 ASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ + AI L+G L+ + ++V+ A Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/61 (36%), Positives = 35/61 (57%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A +YV LP + + L QLF Q G + S ++ ++ T SRG GF+ EAE+A+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 189 E 191 + Sbjct: 184 K 184
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 89.7 bits (221), Expect = 4e-18 Identities = 51/171 (29%), Positives = 90/171 (52%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + + V LP ++ E LF G +E +++ ++ T QS G+GFV ++AEKA+ Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + + + + V+ A P A + RD+ +YV LP + L +LFS++G Sbjct: 105 NTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQLFSQYG 156 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 +++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 157 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 207 Score = 60.1 bits (144), Expect = 4e-09 Identities = 33/82 (40%), Positives = 51/82 (62%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P +G+ + I+V NL D+S L +LF G V + +V+ D +T + +GFGFVTM + + Sbjct: 290 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 349 Query: 453 ELDDAIAALDGQSLEGRALRVN 518 E AIA+L+G L R L+V+ Sbjct: 350 EAAMAIASLNGYRLGDRVLQVS 371 Score = 50.4 bits (119), Expect = 3e-06 Identities = 28/73 (38%), Positives = 42/73 (57%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V NL D D L QLF G V +VI + T++ +GFGFVTM+ +EA A+ Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 198 HRYDVNGRLLTVN 236 + Y + R+L V+ Sbjct: 359 NGYRLGDRVLQVS 371 Score = 45.8 bits (107), Expect = 7e-05 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = +3 Query: 288 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 467 S + V LP + LF G++ ++V D+ TG+S G+GFV ++ + A Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103 Query: 468 IAALDGQSLEGRALRVNVA 524 I L+G L+ + ++V+ A Sbjct: 104 INTLNGLRLQTKTIKVSYA 122
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 89.7 bits (221), Expect = 4e-18 Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+ N D+D +RL ++F G +V+ + ++ +SRGFGFV EEA+KAV Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 198 HRYDVNGRLLTVNKAAPRGAR----------VERPPRDSGSSFRIYVGNLPWQVDDSRLV 347 + +VNGR++ V +A R R +++ + +YV NL +DD RL Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + F +G + A+V+ + G S+GFGFV +S EE A+ ++G+ + + L V +A Sbjct: 312 KEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Score = 85.1 bits (209), Expect = 1e-16 Identities = 53/169 (31%), Positives = 85/169 (50%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V++ NL +D++ L F G + +V+ + SRG+GFV T E A +A++ Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +N R + V R R +Y+ N +DD RL E+FS G + Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D D+GRSRGFGFV + EE A++ ++G+ + GR + V A Sbjct: 219 SVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 89.7 bits (221), Expect = 4e-18 Identities = 51/171 (29%), Positives = 90/171 (52%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + + V LP ++ E LF G +E +++ ++ T QS G+GFV ++AEKA+ Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + + + + V+ A P A + RD+ +YV LP + L +LFS++G Sbjct: 110 NTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQLFSQYG 161 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 +++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 162 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 212 Score = 60.1 bits (144), Expect = 4e-09 Identities = 33/82 (40%), Positives = 51/82 (62%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P +G+ + I+V NL D+S L +LF G V + +V+ D +T + +GFGFVTM + + Sbjct: 295 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 354 Query: 453 ELDDAIAALDGQSLEGRALRVN 518 E AIA+L+G L R L+V+ Sbjct: 355 EAAMAIASLNGYRLGDRVLQVS 376 Score = 50.4 bits (119), Expect = 3e-06 Identities = 28/73 (38%), Positives = 42/73 (57%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V NL D D L QLF G V +VI + T++ +GFGFVTM+ +EA A+ Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 198 HRYDVNGRLLTVN 236 + Y + R+L V+ Sbjct: 364 NGYRLGDRVLQVS 376 Score = 45.8 bits (107), Expect = 7e-05 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = +3 Query: 288 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 467 S + V LP + LF G++ ++V D+ TG+S G+GFV ++ + A Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108 Query: 468 IAALDGQSLEGRALRVNVA 524 I L+G L+ + ++V+ A Sbjct: 109 INTLNGLRLQTKTIKVSYA 127
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 89.4 bits (220), Expect = 6e-18 Identities = 50/171 (29%), Positives = 91/171 (53%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + + V LP ++ + LF G +E +++ ++ T QS G+GFV S +A+KA+ Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + + + + V+ A P A + RD+ +YV LP + + +LFS++G Sbjct: 98 NTLNGLKLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMSQKEMEQLFSQYG 149 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 +++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G A + V Sbjct: 150 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200 Score = 60.1 bits (144), Expect = 4e-09 Identities = 32/79 (40%), Positives = 50/79 (63%) Frame = +3 Query: 282 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 461 +G+ + I+V NL + D+S L +LF G V + +V+ D T + +GFGFVTM + +E Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339 Query: 462 DAIAALDGQSLEGRALRVN 518 AIA+L+G L R L+V+ Sbjct: 340 MAIASLNGYRLGERVLQVS 358 Score = 49.3 bits (116), Expect = 6e-06 Identities = 27/95 (28%), Positives = 44/95 (46%) Frame = +3 Query: 240 AAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSR 419 A P G + S + V LP + LF G + ++V D+ TG+S Sbjct: 21 ALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSL 80 Query: 420 GFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 G+GFV + + D AI L+G L+ + ++V+ A Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V NL + D L QLF G V +VI + T++ +GFGFVTM+ +EA A+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 198 HRYDVNGRLLTVN 236 + Y + R+L V+ Sbjct: 346 NGYRLGERVLQVS 358
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 89.0 bits (219), Expect = 7e-18 Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+ N D+D +RL ++F G +V+ + + +SRGFGFV EEA+KAV Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251 Query: 198 HRYDVNGRLLTVNKAAPRGAR----------VERPPRDSGSSFRIYVGNLPWQVDDSRLV 347 + +VNGR++ V +A R R +++ + +YV NL +DD RL Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + FS +G + +V+ + G S+GFGFV +S EE A+ ++G+ + + L V +A Sbjct: 312 KEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Score = 81.6 bits (200), Expect = 1e-15 Identities = 52/169 (30%), Positives = 84/169 (49%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V++ NL +D++ L F G + +V+ + SRG+GFV T E A +A++ Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +N R + V R R +Y+ N +DD RL E+FS G + Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTL 218 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D ++GRSRGFGFV + EE A+ ++G+ + GR + V A Sbjct: 219 SVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRA 266 Score = 65.9 bits (159), Expect = 7e-11 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 2/170 (1%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 A +Y+G+L DV L + F AG + V + T +S G+ ++ +AE+A++ Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 + + GR + + + +R P R SG +++ NL +D+ L + FS Sbjct: 71 TMNFEVIKGRPIRIMWS-------QRDPGLRKSGVG-NVFIKNLDDSIDNKALYDTFSAF 122 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 G ++ +VV D SRG+GFV +QE + AI ++G L R + V Sbjct: 123 GDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 89.0 bits (219), Expect = 7e-18 Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 12/181 (6%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+ N +VD E L +LF Q G +S + +S+GFGFV+ E+A KAVE Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKT-LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 251 Query: 198 HRYDVNGRLLTVNKAAPRGAR------------VERPPRDSGSSFRIYVGNLPWQVDDSR 341 + +++G+++ V +A + R ER R G +Y+ NL +DD + Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309 Query: 342 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 L + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + L V + Sbjct: 310 LRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 367 Query: 522 A 524 A Sbjct: 368 A 368 Score = 83.6 bits (205), Expect = 3e-16 Identities = 50/169 (29%), Positives = 88/169 (52%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V++ NL +D++ L F G + +V+ + + S+G+ FV T E A+KA+E Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +N R + V + R R + +Y+ N +VDD L ELFS+ GK + Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D G+S+GFGFV+ E+ + A+ ++G+ + G+ + V A Sbjct: 219 SVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 88.6 bits (218), Expect = 1e-17 Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VYV NLP ++ + L + F + GV+ S V+ ++ SR FGFV E A AVE Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVIS-SAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPR----------DSGSSFRIYVGNLPWQVDDSRLV 347 + + +L V +A + R E R + +Y+ NL VDD +L Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 E+FSE+G V ++V+ + G SRGFGFV ++ EE A++ ++G+ + + L + +A Sbjct: 350 EMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407 Score = 67.0 bits (162), Expect = 3e-11 Identities = 46/172 (26%), Positives = 80/172 (46%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + +++ NL +D++ L + F G + +V + T +S+G+GFV E A+ A+ Sbjct: 135 KGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAI 193 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + + +N + + V R R + +YV NLP ++ + L + F + G Sbjct: 194 DKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG 253 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 V+ + VV +G SR FGFV E A+ ++G SL L V A Sbjct: 254 -VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304 Score = 37.0 bits (84), Expect = 0.033 Identities = 21/72 (29%), Positives = 39/72 (54%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 +Y G+L +V ++ L +LF VV RV D++ RS G+ ++ ++ + A+ AL Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109 Query: 480 DGQSLEGRALRV 515 + L R +R+ Sbjct: 110 NYTPLFDRPIRI 121
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 87.0 bits (214), Expect = 3e-17 Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 10/162 (6%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG L + E L F Q G V ++ ++ T+QSRGFGFV V Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69 Query: 195 FHRYDVNGRLLTVNKAAPRGARVER----------PPRDSGSSFRIYVGNLPWQVDDSRL 344 + ++GR + PRG + ER P DS S +I+VG +P ++ L Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129 Query: 345 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 E F + G V + ++YD + R RGFGF+T ++ +D A+ Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 Score = 63.5 bits (153), Expect = 3e-10 Identities = 30/94 (31%), Positives = 55/94 (58%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG +P++ L + F++ GVV +IY+ E + RGFGF+T + ++AV M Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF 296 H +D+ G+ + V +A PR ++ + P + S + Sbjct: 174 -HFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQW 206
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 87.0 bits (214), Expect = 3e-17 Identities = 37/77 (48%), Positives = 56/77 (72%) Frame = +3 Query: 294 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 +R +VG L W DD L FS++G+V+D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 8 YRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 474 ALDGQSLEGRALRVNVA 524 ++GQ L+GR++ VN A Sbjct: 68 GMNGQDLDGRSITVNEA 84 Score = 67.0 bits (162), Expect = 3e-11 Identities = 37/97 (38%), Positives = 54/97 (55%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E + +VG L + D L F Q G V S++I +RET +SRGFGFVT + + A+ Sbjct: 7 EYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFR 299 E + D++GR +TVN+A RG+ R G +R Sbjct: 67 EGMNGQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYR 103
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 86.7 bits (213), Expect = 4e-17 Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+ N D++ ERL ++F + G +S + + +S+GFGFV+ E+A+KAV+ Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPA-LSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 198 HRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNLPWQVDDSRLV 347 + D+NG+ + V +A + R E+ +D + ++ +YV NL +DD RL Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + F G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + L V +A Sbjct: 312 KEFLPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 80.9 bits (198), Expect = 2e-15 Identities = 46/169 (27%), Positives = 89/169 (52%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D++ L F G + +V+ + + S+G+GFV T E AE+A++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +N R + V + R R + +Y+ N ++D RL E+F ++G + Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPAL 218 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D D G+S+GFGFV+ E+ A+ ++G+ + G+++ V A Sbjct: 219 SVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA 266
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 86.3 bits (212), Expect = 5e-17 Identities = 46/153 (30%), Positives = 83/153 (54%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 + K+++G L +D + L + F + G V +++ + T +SRGFGF++ ++ Sbjct: 156 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDE 215 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSE 362 V+ H D G+++ +A PR + + +I+VG + V E FS+ Sbjct: 216 VVKTQHILD--GKVIDPKRAIPRD--------EQDKTGKIFVGGIGPDVRPKEFEEFFSQ 265 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 461 G ++DA+++ D+DTG+SRGFGFVT S + +D Sbjct: 266 WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 298 Score = 55.8 bits (133), Expect = 7e-08 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Frame = +3 Query: 264 ERPPRD-SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 440 ER D S S ++++G L W + L E F ++G V D +++ D TGRSRGFGF++ Sbjct: 148 ERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207 Query: 441 ASQEELDDAIAA---LDGQSLE 497 +D+ + LDG+ ++ Sbjct: 208 EKPSSVDEVVKTQHILDGKVID 229 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/79 (29%), Positives = 44/79 (55%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG + DV + + F Q G + ++++ +++T QSRGFGFVT + + ++ + Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303 Query: 195 FHRYDVNGRLLTVNKAAPR 251 D R + + +A PR Sbjct: 304 -KFIDFKDRKIEIKRAEPR 321
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 85.9 bits (211), Expect = 6e-17 Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 10/162 (6%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG L + E L F Q G V ++ ++ T+QSRGFGFV V Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69 Query: 195 FHRYDVNGRLLTVNKAAPRGARVER----------PPRDSGSSFRIYVGNLPWQVDDSRL 344 + ++GR + PRG + ER P D+ S +I+VG +P ++ L Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129 Query: 345 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 E F + G V + ++YD + R RGFGF+T ++ +D A+ Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 Score = 63.9 bits (154), Expect = 3e-10 Identities = 30/94 (31%), Positives = 55/94 (58%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG +P++ L + F++ GVV +IY+ E + RGFGF+T + ++AV M Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF 296 H +D+ G+ + V +A PR ++ + P + S + Sbjct: 174 -HFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQW 206
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 85.5 bits (210), Expect = 8e-17 Identities = 36/77 (46%), Positives = 55/77 (71%) Frame = +3 Query: 294 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 +R +VG L W DD L F+++G V+D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67 Query: 474 ALDGQSLEGRALRVNVA 524 ++GQ L+GR++ VN A Sbjct: 68 GMNGQDLDGRSITVNEA 84 Score = 63.9 bits (154), Expect = 3e-10 Identities = 34/83 (40%), Positives = 50/83 (60%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E + +VG L + D L F Q G V S++I +RET +SRGFGFVT + + A+ Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66 Query: 189 EMFHRYDVNGRLLTVNKAAPRGA 257 E + D++GR +TVN+A RG+ Sbjct: 67 EGMNGQDLDGRSITVNEAQSRGS 89
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 85.1 bits (209), Expect = 1e-16 Identities = 53/174 (30%), Positives = 97/174 (55%), Gaps = 1/174 (0%) Frame = +3 Query: 6 HEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 H K+++G L Y E L Q FEQ G + V+ + +T +SRGFGF+T S + A Sbjct: 15 HVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDA 74 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF-RIYVGNLPWQVDDSRLVELFSE 362 + + V+GR++ +A PR + RP ++G++ +++VG + +++++ L + F + Sbjct: 75 -QNARPHKVDGRVVEPKRAVPR-TEIGRP--EAGATVKKLFVGGIKEEMEENDLRDYFKQ 130 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +G VV A +V D++T + RGF FV + +D + + Q + G+ + V A Sbjct: 131 YGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQ-IRGKHIDVKKA 183
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 84.7 bits (208), Expect = 1e-16 Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+ NL ++ + + LF Q G + ++ + + D+ RGFGFV + E A+KAV+ Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 321 Query: 198 HRYDVNGRLLTVNKAAPRGARVER----------PPRDSGSSFRIYVGNLPWQVDDSRLV 347 + + G+ L V +A + R E + +++ NL +VDD RL Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 FS G + A+++ D + G+S+GFGFV + EE + A+ ++ + L G+ L V +A Sbjct: 382 AEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439 Score = 68.2 bits (165), Expect = 1e-11 Identities = 43/169 (25%), Positives = 82/169 (48%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V++ NL +D++ L F G + +V + E ++G+GFV ++E A A+E Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 228 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +N + + V R R + + +Y+ NL ++ + +LF + G++ Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEIT 288 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V D++ + RGFGFV A+ E A+ L+ + +G+ L V A Sbjct: 289 SLSLVKDQN-DKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRA 336 Score = 66.6 bits (161), Expect = 4e-11 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 2/170 (1%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 A +YVG L V L +LF G V V + T +S G+ +V +E+ EKA++ Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 + + GR + + +R P R G+ +++ NL +D+ L + FS Sbjct: 140 ELNYTLIKGRPCRIMWS-------QRDPSLRKMGTG-NVFIKNLDPAIDNKALHDTFSAF 191 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 GK++ +V D + G ++G+GFV S E + AI ++G L + + V Sbjct: 192 GKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240 Score = 47.8 bits (112), Expect = 2e-05 Identities = 28/85 (32%), Positives = 44/85 (51%) Frame = +3 Query: 261 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 440 V P + +S +YVG L V ++ L ELF+ G V RV D T RS G+ +V Sbjct: 69 VATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF 128 Query: 441 ASQEELDDAIAALDGQSLEGRALRV 515 + E+ + A+ L+ ++GR R+ Sbjct: 129 HNMEDGEKALDELNYTLIKGRPCRI 153 Score = 45.4 bits (106), Expect = 9e-05 Identities = 28/81 (34%), Positives = 46/81 (56%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +VD ERL F G + ++++ + E +S+GFGFV +T EEA KAV Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424 Query: 198 HRYDVNGRLLTVNKAAPRGAR 260 ++ + G+ L V A + R Sbjct: 425 NQRMLAGKPLYVALAQRKEVR 445
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 84.7 bits (208), Expect = 1e-16 Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 12/181 (6%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIY----NRETDQSRGFGFVTMSTIEEAEKA 185 +YVGNL DV + QLF Q G + ++I +R + S GF V T + Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFS-VLQHTSNDPYCF 69 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVE--------RPPRDSGSSFRIYVGNLPWQVDDSR 341 VE + D L +N G V+ +D+ + F ++VG+L ++ Sbjct: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTED 129 Query: 342 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 + F+ GK+ DARVV D TG+S+G+GFV+ ++ + ++AI + GQ L GR +R N Sbjct: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189 Query: 522 A 524 A Sbjct: 190 A 190 Score = 38.1 bits (87), Expect = 0.015 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 15/97 (15%) Frame = +3 Query: 279 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR----SRGFG------ 428 D G +YVGNL V + +++LFS+ G +++ ++ R S GF Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63 Query: 429 -----FVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 FV + A+AA++G+ + G+ ++VN A Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 100
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 84.3 bits (207), Expect = 2e-16 Identities = 36/77 (46%), Positives = 55/77 (71%) Frame = +3 Query: 294 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 +R +VG L W D+ L FS+ G++VD++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 8 YRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 474 ALDGQSLEGRALRVNVA 524 ++GQ L+GR++ VN A Sbjct: 68 GMNGQDLDGRSITVNEA 84 Score = 67.4 bits (163), Expect = 2e-11 Identities = 36/97 (37%), Positives = 54/97 (55%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E + +VG L + D L F Q G + S++I +RET +SRGFGFVT + + A+ Sbjct: 7 EYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFR 299 E + D++GR +TVN+A RG+ R G +R Sbjct: 67 EGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYR 103
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 84.0 bits (206), Expect = 2e-16 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 11/163 (6%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG L + E L F Q G V ++ ++ T+QSRGFGFV V Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69 Query: 195 FHRYDVNGRLLTVNKAAPRGARVER-----------PPRDSGSSFRIYVGNLPWQVDDSR 341 + ++GR + PRG + ER P ++ S +I+VG +P ++ Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETE 129 Query: 342 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 L E F+ G V + ++YD + R RGFGF+T ++ +D A+ Sbjct: 130 LKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 172 Score = 62.4 bits (150), Expect = 7e-10 Identities = 29/86 (33%), Positives = 51/86 (59%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG +P++ L + F + GVV +IY+ E + RGFGF+T + ++AV M Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 174 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERP 272 H +D+ G+ + V +A PR ++ + P Sbjct: 175 -HFHDIMGKKVEVKRAEPRDSKSQTP 199
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 84.0 bits (206), Expect = 2e-16 Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 10/178 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+V N+ D+D E+L +LF + G E +VI + + +S+GFGFV T E A+KAV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 198 HRYDVNGRLLTVNKAAP----------RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 347 H ++G++L V +A R R+ + IY+ NL ++D +L Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 E FS G + A+V+ + G+ +GFG V +S EE A+ ++G+ + + L V + Sbjct: 320 EEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375 Score = 78.2 bits (191), Expect = 1e-14 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 1/170 (0%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D+ L LF G + +V+ + + S+G+ +V ++ A +A+ Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 198 HRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + +N R + V + P E RD + ++V N+ +DD +L ELF E+G Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D +G+S+GFGFV + E A+ L G+S++G+ L V A Sbjct: 226 ESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 58.9 bits (141), Expect = 8e-09 Identities = 48/169 (28%), Positives = 81/169 (47%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A +YVG+L DV + L + F AG + + + + T G+G+V +AE A+ Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + +NG+ + + P + R SG I++ NL +D+ L LFS G Sbjct: 77 NTMNFDLINGKPFRLMWSQP-----DDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFG 130 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 ++ +VV D D G S+G+ +V S + AI ++G L R + V Sbjct: 131 NILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 84.0 bits (206), Expect = 2e-16 Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 10/178 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+V N+ D+D E+L +LF + G E +VI + + +S+GFGFV T E A+KAV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 198 HRYDVNGRLLTVNKAAP----------RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 347 H ++G++L V +A R R+ + IY+ NL ++D +L Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 E FS G + A+V+ + G+ +GFG V +S EE A+ ++G+ + + L V + Sbjct: 320 EEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375 Score = 78.2 bits (191), Expect = 1e-14 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 1/170 (0%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D+ L LF G + +V+ + + S+G+ +V ++ A +A+ Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 198 HRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + +N R + V + P E RD + ++V N+ +DD +L ELF E+G Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D +G+S+GFGFV + E A+ L G+S++G+ L V A Sbjct: 226 ESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 58.9 bits (141), Expect = 8e-09 Identities = 48/169 (28%), Positives = 81/169 (47%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A +YVG+L DV + L + F AG + + + + T G+G+V +AE A+ Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + +NG+ + + P + R SG I++ NL +D+ L LFS G Sbjct: 77 NTMNFDLINGKPFRLMWSQP-----DDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFG 130 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 ++ +VV D D G S+G+ +V S + AI ++G L R + V Sbjct: 131 NILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 84.0 bits (206), Expect = 2e-16 Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 10/178 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+V N+ D+D E+L +LF + G E +VI + + +S+GFGFV T E A+KAV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 198 HRYDVNGRLLTVNKAAP----------RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 347 H ++G++L V +A R R+ + IY+ NL ++D +L Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 E FS G + A+V+ + G+ +GFG V +S EE A+ ++G+ + + L V + Sbjct: 320 EEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTL 375 Score = 78.2 bits (191), Expect = 1e-14 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 1/170 (0%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D+ L LF G + +V+ + + S+G+ +V ++ A +A+ Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 198 HRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + +N R + V + P E RD + ++V N+ +DD +L ELF E+G Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D +G+S+GFGFV + E A+ L G+S++G+ L V A Sbjct: 226 ESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 58.9 bits (141), Expect = 8e-09 Identities = 48/169 (28%), Positives = 81/169 (47%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A +YVG+L DV + L + F AG + + + + T G+G+V +AE A+ Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + +NG+ + + P + R SG I++ NL +D+ L LFS G Sbjct: 77 NTMNFDLINGKPFRLMWSQP-----DDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFG 130 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 ++ +VV D D G S+G+ +V S + AI ++G L R + V Sbjct: 131 NILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 84.0 bits (206), Expect = 2e-16 Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 10/178 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+V N+ D+D E+L +LF + G E +VI + + +S+GFGFV T E A+KAV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 198 HRYDVNGRLLTVNKAAP----------RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 347 H ++G++L V +A R R+ + IY+ NL ++D +L Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 E FS G + A+V+ + G+ +GFG V +S EE A+ ++G+ + + L V + Sbjct: 320 EEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375 Score = 78.2 bits (191), Expect = 1e-14 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 1/170 (0%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D+ L LF G + +V+ + + S+G+ +V ++ A +A+ Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 198 HRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + +N R + V + P E RD + ++V N+ +DD +L ELF E+G Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D +G+S+GFGFV + E A+ L G+S++G+ L V A Sbjct: 226 ESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 58.9 bits (141), Expect = 8e-09 Identities = 48/169 (28%), Positives = 81/169 (47%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A +YVG+L DV + L + F AG + + + + T G+G+V +AE A+ Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + +NG+ + + P + R SG I++ NL +D+ L LFS G Sbjct: 77 NTMNFDLINGKPFRLMWSQP-----DDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFG 130 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 ++ +VV D D G S+G+ +V S + AI ++G L R + V Sbjct: 131 NILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 84.0 bits (206), Expect = 2e-16 Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 10/178 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+V N+ D+D E+L +LF + G E +VI + + +S+GFGFV T E A+KAV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 198 HRYDVNGRLLTVNKAAP----------RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 347 H ++G++L V +A R R+ + IY+ NL ++D +L Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 E FS G + A+V+ + G+ +GFG V +S EE A+ ++G+ + + L V + Sbjct: 320 EEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375 Score = 78.2 bits (191), Expect = 1e-14 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 1/170 (0%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D+ L LF G + +V+ + + S+G+ +V ++ A +A+ Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 198 HRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + +N R + V + P E RD + ++V N+ +DD +L ELF E+G Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D +G+S+GFGFV + E A+ L G+S++G+ L V A Sbjct: 226 ESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 58.9 bits (141), Expect = 8e-09 Identities = 48/169 (28%), Positives = 81/169 (47%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A +YVG+L DV + L + F AG + + + + T G+G+V +AE A+ Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + +NG+ + + P + R SG I++ NL +D+ L LFS G Sbjct: 77 NTMNFDLINGKPFRLMWSQP-----DDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFG 130 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 ++ +VV D D G S+G+ +V S + AI ++G L R + V Sbjct: 131 NILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 84.0 bits (206), Expect = 2e-16 Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 10/178 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+V N+ D+D E+L +LF + G E +VI + + +S+GFGFV T E A+KAV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 198 HRYDVNGRLLTVNKAAP----------RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 347 H ++G++L V +A R R+ + IY+ NL ++D +L Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 E FS G + A+V+ + G+ +GFG V +S EE A+ ++G+ + + L V + Sbjct: 320 EEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375 Score = 78.2 bits (191), Expect = 1e-14 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 1/170 (0%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D+ L LF G + +V+ + + S+G+ +V ++ A +A+ Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 198 HRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + +N R + V + P E RD + ++V N+ +DD +L ELF E+G Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ D +G+S+GFGFV + E A+ L G+S++G+ L V A Sbjct: 226 ESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 58.9 bits (141), Expect = 8e-09 Identities = 48/169 (28%), Positives = 81/169 (47%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A +YVG+L DV + L + F AG + + + + T G+G+V +AE A+ Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + +NG+ + + P + R SG I++ NL +D+ L LFS G Sbjct: 77 NTMNFDLINGKPFRLMWSQP-----DDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFG 130 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 ++ +VV D D G S+G+ +V S + AI ++G L R + V Sbjct: 131 NILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 84.0 bits (206), Expect = 2e-16 Identities = 52/169 (30%), Positives = 90/169 (53%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +YVGNL DV + QLF Q G + ++I ++ + FV +A A+ Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 68 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + + G+ + VN A ++ +D+ + F ++VG+L ++ + F+ GK+ Sbjct: 69 NGRKILGKEVKVNWATTPSSQ----KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKIS 124 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 DARVV D TG+S+G+GFV+ ++ + ++AI + GQ L GR +R N A Sbjct: 125 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/82 (26%), Positives = 44/82 (53%) Frame = +3 Query: 279 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 458 D G +YVGNL V + +++LFS+ G +++ + + + + FV + Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDA 61 Query: 459 DDAIAALDGQSLEGRALRVNVA 524 A+AA++G+ + G+ ++VN A Sbjct: 62 AAALAAMNGRKILGKEVKVNWA 83
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 84.0 bits (206), Expect = 2e-16 Identities = 47/169 (27%), Positives = 87/169 (51%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +YVGNL + + L Q F+ G + +++ ++ +++ + FV +A A++ Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTL 134 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + + ++ +N A + S +F ++VG+L VDD L F + + Sbjct: 135 NGKQIENNIVKINWA------FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYL 188 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 V++D TG SRG+GFV+ SQ++ +A+ ++ GQ L GR LR+N A Sbjct: 189 SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 237 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/78 (34%), Positives = 47/78 (60%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++VG+L +VD E L F+ V+++ +T SRG+GFV+ ++ ++A+ A++ Sbjct: 163 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 222 Query: 198 HRYDVNGRLLTVNKAAPR 251 D+NGR L +N AA R Sbjct: 223 QGQDLNGRPLRINWAAKR 240 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/81 (27%), Positives = 38/81 (46%) Frame = +3 Query: 270 PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 449 PPR + + Y+GN+P ++ L+ LF G ++D + + +G F+ + Sbjct: 336 PPRVTTA----YIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTH 385 Query: 450 EELDDAIAALDGQSLEGRALR 512 E+ I AL +GR LR Sbjct: 386 EQAAVCIVALANFPFQGRNLR 406
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 83.2 bits (204), Expect = 4e-16 Identities = 46/152 (30%), Positives = 82/152 (53%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ E L FEQ G + V+ + T +SRGFGFVT +T+EE + A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + V+GR++ +A R + P + +I+VG + ++ L + F ++GK+ Sbjct: 74 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 130 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++ DR +G+ RGF FVT + +D + Sbjct: 131 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.5 bits (127), Expect = 3e-07 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 453 ELDDAIAA----LDGQSLE 497 E+D A+ A +DG+ +E Sbjct: 66 EVDAAMNARPHKVDGRVVE 84
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 83.2 bits (204), Expect = 4e-16 Identities = 46/152 (30%), Positives = 82/152 (53%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ E L FEQ G + V+ + T +SRGFGFVT +T+EE + A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + V+GR++ +A R + P + +I+VG + ++ L + F ++GK+ Sbjct: 74 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 130 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++ DR +G+ RGF FVT + +D + Sbjct: 131 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.5 bits (127), Expect = 3e-07 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 453 ELDDAIAA----LDGQSLE 497 E+D A+ A +DG+ +E Sbjct: 66 EVDAAMNARPHKVDGRVVE 84
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 83.2 bits (204), Expect = 4e-16 Identities = 46/152 (30%), Positives = 82/152 (53%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ E L FEQ G + V+ + T +SRGFGFVT +T+EE + A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + V+GR++ +A R + P + +I+VG + ++ L + F ++GK+ Sbjct: 74 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 130 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++ DR +G+ RGF FVT + +D + Sbjct: 131 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.5 bits (127), Expect = 3e-07 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 453 ELDDAIAA----LDGQSLE 497 E+D A+ A +DG+ +E Sbjct: 66 EVDAAMNARPHKVDGRVVE 84
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 83.2 bits (204), Expect = 4e-16 Identities = 46/152 (30%), Positives = 82/152 (53%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ E L FEQ G + V+ + T +SRGFGFVT +T+EE + A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + V+GR++ +A R + P + +I+VG + ++ L + F ++GK+ Sbjct: 74 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 130 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++ DR +G+ RGF FVT + +D + Sbjct: 131 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162 Score = 53.5 bits (127), Expect = 3e-07 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 453 ELDDAIAA----LDGQSLE 497 E+D A+ A +DG+ +E Sbjct: 66 EVDAAMNARPHKVDGRVVE 84
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 82.8 bits (203), Expect = 5e-16 Identities = 35/77 (45%), Positives = 54/77 (70%) Frame = +3 Query: 294 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 +R +VG L W D+ L FS+ G+V+D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65 Query: 474 ALDGQSLEGRALRVNVA 524 ++G+ L+GR + VN A Sbjct: 66 EMNGKELDGRTITVNEA 82 Score = 60.5 bits (145), Expect = 3e-09 Identities = 31/82 (37%), Positives = 49/82 (59%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E + +VG L + L + F Q G V S++I +RET +SRGFGFVT + + A+ Sbjct: 5 EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 64 Query: 189 EMFHRYDVNGRLLTVNKAAPRG 254 + + +++GR +TVN+A RG Sbjct: 65 DEMNGKELDGRTITVNEAQSRG 86
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 82.4 bits (202), Expect = 7e-16 Identities = 43/152 (28%), Positives = 81/152 (53%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ E L +EQ G + V+ + + +SRGFGFVT S + E + A+ Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + ++GR++ +A R + P + +++VG + ++ L E F E+GK+ Sbjct: 70 -RPHTIDGRVVEPKRAVAREESAK--PGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKI 126 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++ D+ +G+ RGFGFVT + +D + Sbjct: 127 ESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 ++++G L ++ + L + + G++ D V+ D + RSRGFGFVT + E+D A++A Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 477 ----LDGQSLE 497 +DG+ +E Sbjct: 70 RPHTIDGRVVE 80
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 82.4 bits (202), Expect = 7e-16 Identities = 35/77 (45%), Positives = 53/77 (68%) Frame = +3 Query: 294 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 +R +VG L W +D L + FS+ G + D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65 Query: 474 ALDGQSLEGRALRVNVA 524 ++GQ L+GR + VN A Sbjct: 66 GMNGQELDGRNITVNEA 82 Score = 65.1 bits (157), Expect = 1e-10 Identities = 33/83 (39%), Positives = 51/83 (61%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E + +VG L + + E L Q F Q G + S++I +RET +SRGFGFVT + A+ Sbjct: 5 EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAI 64 Query: 189 EMFHRYDVNGRLLTVNKAAPRGA 257 E + +++GR +TVN+A RG+ Sbjct: 65 EGMNGQELDGRNITVNEAQSRGS 87
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 82.4 bits (202), Expect = 7e-16 Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 12/185 (6%) Frame = +3 Query: 6 HEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 H +YV N+ + E+ +LF + G + VS + + +GFGFV E+A KA Sbjct: 216 HYTNLYVKNINSETTDEQFQELFAKFGPI-VSASLEKDADGKLKGFGFVNYEKHEDAVKA 274 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGA------------RVERPPRDSGSSFRIYVGNLPWQV 329 VE + ++NG L V +A + R+E+ + G ++V NL V Sbjct: 275 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQG--VNLFVKNLDDSV 332 Query: 330 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 DD +L E F+ +G + A+V+ + G+S+GFGFV ++ EE AI + Q + G+ L Sbjct: 333 DDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 391 Query: 510 RVNVA 524 V +A Sbjct: 392 YVAIA 396 Score = 74.7 bits (182), Expect = 1e-13 Identities = 50/169 (29%), Positives = 82/169 (48%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL D+D++ L F G + +S I E +S+GFGFV A++A++ Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDI-LSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 185 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + +NG+ + V R R + +YV N+ + D + ELF++ G +V Sbjct: 186 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 245 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 A + D D G+ +GFGFV E+ A+ AL+ L G L V A Sbjct: 246 SASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA 293 Score = 74.7 bits (182), Expect = 1e-13 Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 2/170 (1%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 A +YVG+L V L +F G V V + T S G+ +V + E KA+E Sbjct: 37 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 96 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 + + GRL + + +R P R GS I++ NL +D+ L + FS Sbjct: 97 QLNYTPIKGRLCRIMWS-------QRDPSLRKKGSG-NIFIKNLHPDIDNKALYDTFSVF 148 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 G ++ +++ D + G+S+GFGFV + +AI AL+G L G+ + V Sbjct: 149 GDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 197 Score = 46.6 bits (109), Expect = 4e-05 Identities = 30/81 (37%), Positives = 45/81 (55%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V NL VD E+L + F G + ++V+ E +S+GFGFV ST EEA KA+ Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEK 381 Query: 198 HRYDVNGRLLTVNKAAPRGAR 260 ++ V G+ L V A + R Sbjct: 382 NQQIVAGKPLYVAIAQRKDVR 402 Score = 43.1 bits (100), Expect = 5e-04 Identities = 26/76 (34%), Positives = 38/76 (50%) Frame = +3 Query: 288 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 467 SS +YVG+L V ++ L ++FS G V RV D T S G+ +V E A Sbjct: 35 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 94 Query: 468 IAALDGQSLEGRALRV 515 I L+ ++GR R+ Sbjct: 95 IEQLNYTPIKGRLCRI 110
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 82.0 bits (201), Expect = 9e-16 Identities = 46/152 (30%), Positives = 84/152 (55%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ + L + FE+ G + V+ + +T +SRGFGFVT S +EE + A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + V+GR++ +A R V+ P + +I+VG + ++ L + F ++GK+ Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKI 152 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 V+ DR +G+ RGF FVT + +D + Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 53.5 bits (127), Expect = 3e-07 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P++ ++++G L ++ D L E F + G + D V+ D T RSRGFGFVT + E Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 453 ELDDAIAA----LDGQSLE 497 E+D A+ A +DG+ +E Sbjct: 88 EVDAAMCARPHKVDGRVVE 106
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 82.0 bits (201), Expect = 9e-16 Identities = 46/152 (30%), Positives = 84/152 (55%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ + L + FE+ G + V+ + +T +SRGFGFVT S +EE + A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + V+GR++ +A R V+ P + +I+VG + ++ L + F ++GK+ Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKI 152 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 V+ DR +G+ RGF FVT + +D + Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 53.5 bits (127), Expect = 3e-07 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P++ ++++G L ++ D L E F + G + D V+ D T RSRGFGFVT + E Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 453 ELDDAIAA----LDGQSLE 497 E+D A+ A +DG+ +E Sbjct: 88 EVDAAMCARPHKVDGRVVE 106
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 82.0 bits (201), Expect = 9e-16 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 3/176 (1%) Frame = +3 Query: 6 HEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMS---TIEEA 176 H K+++G L Y E L FE+ G + V+ + T +SRGFGF+T S I+EA Sbjct: 29 HMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA 88 Query: 177 EKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELF 356 +K+ + ++GR++ +A PR + P + +++VG L D+ + + F Sbjct: 89 QKS----RPHKIDGRVVEPKRAVPR--QDIDSPNAGATVKKLFVGALKDDHDEQSIRDYF 142 Query: 357 SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 G +VD +V D++TG+ RGF FV + +D + Q L G+ + V A Sbjct: 143 QHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQ-LNGKMVDVKKA 197
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 82.0 bits (201), Expect = 9e-16 Identities = 48/166 (28%), Positives = 82/166 (49%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V LP D+ L LF G + ++ + +T S G+ FV ++ +A+ A++ + Sbjct: 106 VNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNG 165 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 383 V + L V+ A P G ++ +YV NLP + D L ++F ++G +V Sbjct: 166 ITVRNKRLKVSYARPGGESIK--------DTNLYVTNLPRTITDDELEKIFGKYGNIVQK 217 Query: 384 RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 ++ D+ TGR RG FV +EE +AI+AL+ EG + + V Sbjct: 218 NILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTV 263 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + +YV NLP + + L ++F + G + ++ ++ T + RG FV + EEA++A+ Sbjct: 187 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAI 246 Query: 189 EMFHRYDVNG--RLLTVNKAAPRG 254 + G + LTV A G Sbjct: 247 SALNNVIPEGASQPLTVRLAEEHG 270
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 82.0 bits (201), Expect = 9e-16 Identities = 46/152 (30%), Positives = 84/152 (55%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ + L + FE+ G + V+ + +T +SRGFGFVT S +EE + A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + V+GR++ +A R V+ P + +I+VG + ++ L + F ++GK+ Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKI 152 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 V+ DR +G+ RGF FVT + +D + Sbjct: 153 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 53.5 bits (127), Expect = 3e-07 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P++ ++++G L ++ D L E F + G + D V+ D T RSRGFGFVT + E Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 453 ELDDAIAA----LDGQSLE 497 E+D A+ A +DG+ +E Sbjct: 88 EVDAAMCARPHKVDGRVVE 106
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 82.0 bits (201), Expect = 9e-16 Identities = 48/176 (27%), Positives = 91/176 (51%), Gaps = 9/176 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+VG L ++VD + L Q FE+ G + + VI + ++ +S+G+G+V T E A+ AV Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF---------RIYVGNLPWQVDDSRLVE 350 +++GR++ ++ + PR A + + +F ++VGNL + + L Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384 Query: 351 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 F G + R+ D +GR +GFG+VT + + + ++G + GR R++ Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLD 439 Score = 74.3 bits (181), Expect = 2e-13 Identities = 33/92 (35%), Positives = 58/92 (63%) Frame = +3 Query: 249 RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 428 R A++ +P +DS + ++VG L W VDD L + F E+G +V ARV+ D +GRS+G+G Sbjct: 248 RPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307 Query: 429 FVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V + E A+AA + ++GR + ++++ Sbjct: 308 YVDFETPEAAKAAVAANGTKEIDGRMVNLDLS 339
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 81.6 bits (200), Expect = 1e-15 Identities = 44/166 (26%), Positives = 84/166 (50%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V LP ++ + L LF G VE +++I ++ S G+GFV T ++AE+A+ + Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 383 + + + V+ A RP + +Y+ LP + + ++FS G+++++ Sbjct: 84 LRLQSKTIKVSYA--------RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135 Query: 384 RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 RV+ D+ TG SRG F+ + E ++AI + +G G + + V Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181 Score = 71.6 bits (174), Expect = 1e-12 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 44/214 (20%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A +Y+ LP + + + +F + G + S V+ ++ T SRG F+ EAE+A+ Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Query: 189 EMF--HRYDVNGRLLTVNKAA------------------------PRGARVER------- 269 F H+ + +TV AA P + +R Sbjct: 165 TSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMG 224 Query: 270 -----------PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 416 P ++ S + I++ NL D+ L ++F G V + +V+ D +T + Sbjct: 225 VDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKC 284 Query: 417 RGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 +GFGFVTM + EE AIA+L+G L + L+V+ Sbjct: 285 KGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/75 (32%), Positives = 42/75 (56%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 + V LP + L LFS G+V A+++ D+ G S G+GFV + ++ + AI L Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 Query: 480 DGQSLEGRALRVNVA 524 +G L+ + ++V+ A Sbjct: 82 NGLRLQSKTIKVSYA 96
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 81.6 bits (200), Expect = 1e-15 Identities = 47/166 (28%), Positives = 85/166 (51%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V LP D+ L LF G + ++ + +T S G+ FV ++ ++++A+++ + Sbjct: 131 VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNG 190 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 383 V + L V+ A P G ++ +YV NLP + D +L +F ++G +V Sbjct: 191 ITVRNKRLKVSYARPGGESIK--------DTNLYVTNLPRTITDDQLDTIFGKYGSIVQK 242 Query: 384 RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 ++ D+ TGR RG FV +EE +AI+AL+ EG + ++V Sbjct: 243 NILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 288 Score = 37.7 bits (86), Expect = 0.019 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + +YV NLP + ++L +F + G + ++ ++ T + RG FV + EEA++A+ Sbjct: 212 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 271
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 81.6 bits (200), Expect = 1e-15 Identities = 47/166 (28%), Positives = 85/166 (51%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V LP D+ L LF G + ++ + +T S G+ FV ++ ++++A+++ + Sbjct: 129 VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNG 188 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 383 V + L V+ A P G ++ +YV NLP + D +L +F ++G +V Sbjct: 189 ITVRNKRLKVSYARPGGESIK--------DTNLYVTNLPRTITDDQLDTIFGKYGSIVQK 240 Query: 384 RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 ++ D+ TGR RG FV +EE +AI+AL+ EG + ++V Sbjct: 241 NILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 286 Score = 37.7 bits (86), Expect = 0.019 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + +YV NLP + ++L +F + G + ++ ++ T + RG FV + EEA++A+ Sbjct: 210 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 269
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 81.3 bits (199), Expect = 2e-15 Identities = 47/166 (28%), Positives = 82/166 (49%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V LP D+ L LF G + ++ + +T S G+ FV ++ +A+ A++ + Sbjct: 89 VNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNG 148 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 383 V + L V+ A P G ++ +YV NLP + D L ++F ++G +V Sbjct: 149 VTVRNKRLKVSYARPGGESIK--------DTNLYVTNLPRTITDDELEKIFGKYGNIVQK 200 Query: 384 RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 ++ D+ TG+ RG FV +EE +AI+AL+ EG + + V Sbjct: 201 NILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTV 246 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + +YV NLP + + L ++F + G + ++ ++ T + RG FV + EEA++A+ Sbjct: 170 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAI 229 Query: 189 EMFHRYDVNG--RLLTVNKAAPRG 254 + G + LTV A G Sbjct: 230 SALNNVIPEGASQPLTVRLAEEHG 253
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 81.3 bits (199), Expect = 2e-15 Identities = 45/166 (27%), Positives = 83/166 (50%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V LP ++ E L LF G VE +++I ++ S G+GFV T ++AE+A+ + Sbjct: 24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG 83 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 383 + + + V+ A RP + +Y+ LP + + ++FS G+++++ Sbjct: 84 LRLQSKTIKVSYA--------RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135 Query: 384 RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 RV+ D+ TG SRG F+ + E ++AI + G G + + V Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITV 181 Score = 71.2 bits (173), Expect = 2e-12 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 44/214 (20%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A +Y+ LP + + + +F + G + S V+ ++ T SRG F+ EAE+A+ Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Query: 189 EMF--HRYDVNGRLLTVNKAA------------------------PRGARVER------- 269 F H+ + +TV AA P + +R Sbjct: 165 TSFIGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGGPVHHQAQRFRFSPMG 224 Query: 270 -----------PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 416 P ++ S + I++ NL D+ L ++F G V + +V+ D +T + Sbjct: 225 VDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKC 284 Query: 417 RGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 +GFGFVTM + EE AIA+L+G L + L+V+ Sbjct: 285 KGFGFVTMTNYEESAMAIASLNGYRLGDKILQVS 318 Score = 49.7 bits (117), Expect = 5e-06 Identities = 24/75 (32%), Positives = 43/75 (57%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 + V LP + L LFS G+V A+++ D+ G S G+GFV + ++ + AI+ L Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81 Query: 480 DGQSLEGRALRVNVA 524 +G L+ + ++V+ A Sbjct: 82 NGLRLQSKTIKVSYA 96
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 80.9 bits (198), Expect = 2e-15 Identities = 35/77 (45%), Positives = 56/77 (72%) Frame = +3 Query: 294 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 +R +VG L W ++ L + F+ G+V+D++V+ DR+TGRSRGFGFVT +S++ + DAI Sbjct: 8 YRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIE 67 Query: 474 ALDGQSLEGRALRVNVA 524 ++G+ L+GR + VN A Sbjct: 68 NMNGKELDGRNITVNQA 84 Score = 64.7 bits (156), Expect = 1e-10 Identities = 35/82 (42%), Positives = 52/82 (63%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E + +VG L + ++E L Q F G V S+VI +RET +SRGFGFVT S+ + A+ Sbjct: 7 EYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAI 66 Query: 189 EMFHRYDVNGRLLTVNKAAPRG 254 E + +++GR +TVN+A RG Sbjct: 67 ENMNGKELDGRNITVNQAQSRG 88
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 80.9 bits (198), Expect = 2e-15 Identities = 45/152 (29%), Positives = 81/152 (53%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ E L FEQ G + V+ + T +SRGFGFVT +T+E+ + A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 73 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + V+GR++ +A R + P + +I+VG + ++ L + F ++GK+ Sbjct: 74 -RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 130 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++ DR +G+ RGF FVT +D + Sbjct: 131 EVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 162 Score = 52.0 bits (123), Expect = 1e-06 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 453 ELDDAIAA----LDGQSLE 497 ++D A+ A +DG+ +E Sbjct: 66 KVDAAMNARPHKVDGRVVE 84
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 80.9 bits (198), Expect = 2e-15 Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VYV NL + L F + G + S V+ +S+GFGFV ++A +AVE Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKI-TSAVVMKDGEGKSKGFGFVNFENADDAARAVESL 275 Query: 198 HRYDVNGRLLTVNKAAPRG-------ARVERPPRDSGSSFR---IYVGNLPWQVDDSRLV 347 + + + + V +A + R E+ +++ F+ +YV NL + D +L Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 E+FS G V ++V+ D + G S+G GFV A+ EE +A++ L G+ +E + L V +A Sbjct: 336 EIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393 Score = 75.1 bits (183), Expect = 1e-13 Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 2/168 (1%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +YVG+L ++V +L F Q G V V + T +S G+G+V + ++A +A++ Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 + + G+ + V + R P R SG+ I++ NL +D L + FS G Sbjct: 98 NYIPLYGKPIRVMYS-------HRDPSVRRSGAG-NIFIKNLDESIDHKALHDTFSSFGN 149 Query: 372 VVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 +V +V D +G+S+G+GFV A++E AI L+G L + + V Sbjct: 150 IVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196 Score = 74.7 bits (182), Expect = 1e-13 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 4/166 (2%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL +D + L F G + +V + + QS+G+GFV + E A+KA+E Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIE-- 182 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSS----FRIYVGNLPWQVDDSRLVELFSEH 365 +NG LL +K G + R RDS ++ +YV NL D L F E+ Sbjct: 183 ---KLNGMLLN-DKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEY 238 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 503 GK+ A V+ D + G+S+GFGFV + ++ A+ +L+G + + Sbjct: 239 GKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDK 283
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 80.5 bits (197), Expect = 3e-15 Identities = 43/152 (28%), Positives = 81/152 (53%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ E L +EQ G + V+ + + +SRGFGFVT S++ E + A+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + ++GR++ +A R P + +++VG + ++ L + F E+GK+ Sbjct: 70 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 126 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++ DR +G+ RGFGFVT + +D + Sbjct: 127 DTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/71 (36%), Positives = 44/71 (61%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 ++++G L ++ + L + + GK+ D V+ D + RSRGFGFVT +S E+D A+AA Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 477 LDGQSLEGRAL 509 S++GR + Sbjct: 70 RP-HSIDGRVV 79
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 80.5 bits (197), Expect = 3e-15 Identities = 52/170 (30%), Positives = 84/170 (49%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L L FE G + V+ N +T +SR FGFVT S +EEA+ A+ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + V+G + + +A R P +++VG L V + L+E FS+ G V Sbjct: 68 -SPHAVDGNTVELKRAVSREDSAR--PGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTV 124 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 A ++ D+ +G+ RGFGFV + + D A A + ++G + V A Sbjct: 125 EKAEIIADKQSGKKRGFGFVYFQNHDAADKA-AVVKFHPIQGHRVEVKKA 173
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 80.5 bits (197), Expect = 3e-15 Identities = 43/152 (28%), Positives = 81/152 (53%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ E L +EQ G + V+ + + +SRGFGFVT S++ E + A+ Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + ++GR++ +A R P + +++VG + ++ L + F E+GK+ Sbjct: 82 -RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++ DR +G+ RGFGFVT + +D + Sbjct: 139 DTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170 Score = 55.5 bits (132), Expect = 9e-08 Identities = 29/83 (34%), Positives = 49/83 (59%) Frame = +3 Query: 261 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 440 +ER R+ ++++G L ++ + L + + GK+ D V+ D + RSRGFGFVT Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69 Query: 441 ASQEELDDAIAALDGQSLEGRAL 509 +S E+D A+AA S++GR + Sbjct: 70 SSMAEVDAAMAARP-HSIDGRVV 91
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 80.1 bits (196), Expect = 3e-15 Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 2/171 (1%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLF-EQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 + ++ N+P+DV + L L E+ G V E++ + E +SRG V E +KA E Sbjct: 70 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAE 128 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS-SFRIYVGNLPWQVDDSRLVELFSEHG 368 + +++ ++GR L V K P G R + +G ++V NL ++V +L E+FS G Sbjct: 129 VLNKHSLSGRPLKV-KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAG 187 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 VV A ++ D+D G+SRG G VT E AI+ +GQ L R + V + Sbjct: 188 VVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 237 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +I+V NLP+ L + F+E G V+ A + + G+S+G G V S E + A Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 670 Query: 477 LDGQSLEGRALRVNV 521 ++G L GR + V + Sbjct: 671 MNGMKLSGREIDVRI 685 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R +++V NLP+D + L F + G V +++ E +S+G G V + E AE+ Sbjct: 609 RKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAER 666 Query: 183 AVEMFHRYDVNGRLLTV 233 A M + ++GR + V Sbjct: 667 ACRMMNGMKLSGREIDV 683
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 79.7 bits (195), Expect = 4e-15 Identities = 46/166 (27%), Positives = 82/166 (49%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V LP D+ L LF G + ++ + +T S G+ FV + ++++A++ + Sbjct: 114 VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNG 173 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 383 V + L V+ A P G ++ +YV NLP + D +L +F ++G +V Sbjct: 174 ITVRNKRLKVSYARPGGESIK--------DTNLYVTNLPRTITDDQLDTIFGKYGMIVQK 225 Query: 384 RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 ++ D+ TG+ RG FV +EE +AI+AL+ EG + + V Sbjct: 226 NILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTV 271 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + +YV NLP + ++L +F + G++ ++ ++ T + RG FV + EEA++A+ Sbjct: 195 DTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAI 254 Query: 189 EMFHRYDVNG--RLLTVNKAAPRG 254 + G + LTV A G Sbjct: 255 SALNNVIPEGASQPLTVRLAEEHG 278
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 79.7 bits (195), Expect = 4e-15 Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 1/173 (0%) Frame = +3 Query: 9 EAKVYV-GNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 E+K V NL Y E L ++FE+A ++V + + +S+G+ F+ ++ E+A++A Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ----NQQGKSKGYAFIEFASFEDAKEA 538 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 + ++ ++ GR + + PRG+ P S S ++V L + L E F Sbjct: 539 LNSCNKMEIEGRTIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEETLKESFEGS 594 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ A Sbjct: 595 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 644 Score = 64.3 bits (155), Expect = 2e-10 Identities = 40/167 (23%), Positives = 84/167 (50%), Gaps = 3/167 (1%) Frame = +3 Query: 30 NLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYD 209 NL +++ + L ++FE A E+ + +S+G ++ + +AEK +E + Sbjct: 399 NLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 453 Query: 210 VNGRLLTVNKAAPRGARVERPPRD---SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVD 380 ++GR +++ +G R ER ++ SG S + + NL + + L E+F + + Sbjct: 454 IDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI-- 511 Query: 381 ARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 V G+S+G+ F+ AS E+ +A+ + + +EGR +R+ + Sbjct: 512 --KVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 556 Score = 47.0 bits (110), Expect = 3e-05 Identities = 27/79 (34%), Positives = 46/79 (58%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V L D E L + FE G V + ++ +RET S+GFGFV ++ E+A+ A E Sbjct: 573 LFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 198 HRYDVNGRLLTVNKAAPRG 254 +++G +T++ A P+G Sbjct: 630 EDGEIDGNKVTLDWAKPKG 648 Score = 41.6 bits (96), Expect = 0.001 Identities = 30/129 (23%), Positives = 61/129 (47%) Frame = +3 Query: 123 TDQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRI 302 T +R FG+V + E+ EKA+E+ V G + + K R ++ R R + Sbjct: 343 TGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGRDSKKVRAAR------TL 395 Query: 303 YVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD 482 NL + + + L E+F + ++ R+V G+S+G ++ S+ + + + Sbjct: 396 LAKNLSFNITEDELKEVFED---ALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQ 450 Query: 483 GQSLEGRAL 509 G ++GR++ Sbjct: 451 GAEIDGRSV 459
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 79.7 bits (195), Expect = 4e-15 Identities = 34/77 (44%), Positives = 53/77 (68%) Frame = +3 Query: 294 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 +R +VG L W +D L FS+ G V+D++++ DR++GRSRGFGFVT ++ + DAI Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65 Query: 474 ALDGQSLEGRALRVNVA 524 ++G+ L+GR + VN A Sbjct: 66 EMNGKELDGRVITVNEA 82 Score = 62.4 bits (150), Expect = 7e-10 Identities = 32/83 (38%), Positives = 52/83 (62%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E + +VG L + + E L + F Q G V S++I +RE+ +SRGFGFVT + A+ Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64 Query: 189 EMFHRYDVNGRLLTVNKAAPRGA 257 E + +++GR++TVN+A RG+ Sbjct: 65 EEMNGKELDGRVITVNEAQSRGS 87
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 79.7 bits (195), Expect = 4e-15 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 2/169 (1%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V LP D+ L LF G + ++ + +T S G+GFV + +A +A+ + Sbjct: 82 VNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNG 141 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 383 V + + V+ A P G ++ RD+ +YV NL + D +L +F ++G++V Sbjct: 142 ITVRNKRIKVSFARPGGEQL----RDT----NLYVTNLSRSITDEQLETIFGKYGQIVQK 193 Query: 384 RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEG--RALRVNVA 524 ++ D+ TG RG F+ +EE +AI+AL+ EG + L V VA Sbjct: 194 NILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGTQPLTVRVA 242
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 79.7 bits (195), Expect = 4e-15 Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 1/173 (0%) Frame = +3 Query: 9 EAKVYV-GNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 E+K V NL Y E L ++FE+A ++V + + +S+G+ F+ ++ E+A++A Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEA 540 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 + ++ ++ GR + + PRG+ P S S ++V L + L E F Sbjct: 541 LNSCNKREIEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEETLKESFDGS 596 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ A Sbjct: 597 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 646 Score = 65.9 bits (159), Expect = 7e-11 Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 4/168 (2%) Frame = +3 Query: 30 NLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYD 209 NLPY V + L ++FE A +E+ + +S+G ++ T +AEK E + Sbjct: 400 NLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 454 Query: 210 VNGRLLTVNKAAPRGA----RVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 ++GR +++ +G R + SG S + + NL + + L E+F + + Sbjct: 455 IDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI- 513 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 V G+S+G+ F+ AS E+ +A+ + + + +EGRA+R+ + Sbjct: 514 ---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 558 Score = 46.6 bits (109), Expect = 4e-05 Identities = 37/168 (22%), Positives = 78/168 (46%), Gaps = 4/168 (2%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSE----VIYNRETDQSRGFGFVTMSTIEEAEKA 185 ++VGNL ++ + L + G+ +V + + +R FG+V + E+ EKA Sbjct: 310 LFVGNLNFNKSAPEL-----KTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKA 364 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 +E+ V G + + K + ++ ER R + NLP++V L E+F + Sbjct: 365 LEL-TGLKVFGNEIKLEKPKGKDSKKERDAR------TLLAKNLPYKVTQDELKEVFEDA 417 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 ++ R+V G+S+G ++ ++ + + G ++GR++ Sbjct: 418 AEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSI 460 Score = 45.8 bits (107), Expect = 7e-05 Identities = 26/79 (32%), Positives = 46/79 (58%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V L D E L + F+ G V + ++ +RET S+GFGFV ++ E+A+ A E Sbjct: 575 LFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631 Query: 198 HRYDVNGRLLTVNKAAPRG 254 +++G +T++ A P+G Sbjct: 632 EDGEIDGNKVTLDWAKPKG 650 Score = 35.0 bits (79), Expect = 0.12 Identities = 27/93 (29%), Positives = 45/93 (48%) Frame = +3 Query: 237 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 416 KAAP + + + ++F ++VGNL + L S+ D VV D G + Sbjct: 289 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMT 347 Query: 417 RGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 R FG+V S E+L+ A+ L G + G +++ Sbjct: 348 RKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 379
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 79.7 bits (195), Expect = 4e-15 Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 1/173 (0%) Frame = +3 Query: 9 EAKVYV-GNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 E+K V NL Y E L ++FE+A ++V + + +S+G+ F+ ++ E+A++A Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEA 539 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 + ++ ++ GR + + PRG+ P S S ++V L + L E F Sbjct: 540 LNSCNKREIEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEETLKESFDGS 595 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ A Sbjct: 596 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 645 Score = 65.9 bits (159), Expect = 7e-11 Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 4/168 (2%) Frame = +3 Query: 30 NLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYD 209 NLPY V + L ++FE A +E+ + +S+G ++ T +AEK E + Sbjct: 399 NLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 453 Query: 210 VNGRLLTVNKAAPRGA----RVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 ++GR +++ +G R + SG S + + NL + + L E+F + + Sbjct: 454 IDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI- 512 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 V G+S+G+ F+ AS E+ +A+ + + + +EGRA+R+ + Sbjct: 513 ---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 557 Score = 46.6 bits (109), Expect = 4e-05 Identities = 37/168 (22%), Positives = 78/168 (46%), Gaps = 4/168 (2%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSE----VIYNRETDQSRGFGFVTMSTIEEAEKA 185 ++VGNL ++ + L + G+ +V + + +R FG+V + E+ EKA Sbjct: 309 LFVGNLNFNKSAPEL-----KTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKA 363 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 +E+ V G + + K + ++ ER R + NLP++V L E+F + Sbjct: 364 LEL-TGLKVFGNEIKLEKPKGKDSKKERDAR------TLLAKNLPYKVTQDELKEVFEDA 416 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 ++ R+V G+S+G ++ ++ + + G ++GR++ Sbjct: 417 AEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSI 459 Score = 45.8 bits (107), Expect = 7e-05 Identities = 26/79 (32%), Positives = 46/79 (58%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V L D E L + F+ G V + ++ +RET S+GFGFV ++ E+A+ A E Sbjct: 574 LFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630 Query: 198 HRYDVNGRLLTVNKAAPRG 254 +++G +T++ A P+G Sbjct: 631 EDGEIDGNKVTLDWAKPKG 649 Score = 35.0 bits (79), Expect = 0.12 Identities = 27/93 (29%), Positives = 45/93 (48%) Frame = +3 Query: 237 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 416 KAAP + + + ++F ++VGNL + L S+ D VV D G + Sbjct: 288 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMT 346 Query: 417 RGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 R FG+V S E+L+ A+ L G + G +++ Sbjct: 347 RKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 378
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 79.7 bits (195), Expect = 4e-15 Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 1/173 (0%) Frame = +3 Query: 9 EAKVYV-GNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 E+K V NL Y E L ++FE+A ++V + + +S+G+ F+ ++ E+A++A Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEA 538 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 + ++ ++ GR + + PRG+ P S S ++V L + L E F Sbjct: 539 LNSCNKREIEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEETLKESFDGS 594 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ A Sbjct: 595 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 644 Score = 65.9 bits (159), Expect = 7e-11 Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 4/168 (2%) Frame = +3 Query: 30 NLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYD 209 NLPY V + L ++FE A +E+ + +S+G ++ T +AEK E + Sbjct: 398 NLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 452 Query: 210 VNGRLLTVNKAAPRGA----RVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 ++GR +++ +G R + SG S + + NL + + L E+F + + Sbjct: 453 IDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI- 511 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 V G+S+G+ F+ AS E+ +A+ + + + +EGRA+R+ + Sbjct: 512 ---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 556 Score = 46.6 bits (109), Expect = 4e-05 Identities = 37/168 (22%), Positives = 78/168 (46%), Gaps = 4/168 (2%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSE----VIYNRETDQSRGFGFVTMSTIEEAEKA 185 ++VGNL ++ + L + G+ +V + + +R FG+V + E+ EKA Sbjct: 308 LFVGNLNFNKSAPEL-----KTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKA 362 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 +E+ V G + + K + ++ ER R + NLP++V L E+F + Sbjct: 363 LEL-TGLKVFGNEIKLEKPKGKDSKKERDAR------TLLAKNLPYKVTQDELKEVFEDA 415 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 ++ R+V G+S+G ++ ++ + + G ++GR++ Sbjct: 416 AEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSI 458 Score = 45.8 bits (107), Expect = 7e-05 Identities = 26/79 (32%), Positives = 46/79 (58%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V L D E L + F+ G V + ++ +RET S+GFGFV ++ E+A+ A E Sbjct: 573 LFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 198 HRYDVNGRLLTVNKAAPRG 254 +++G +T++ A P+G Sbjct: 630 EDGEIDGNKVTLDWAKPKG 648 Score = 35.0 bits (79), Expect = 0.12 Identities = 27/93 (29%), Positives = 45/93 (48%) Frame = +3 Query: 237 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 416 KAAP + + + ++F ++VGNL + L S+ D VV D G + Sbjct: 287 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMT 345 Query: 417 RGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 R FG+V S E+L+ A+ L G + G +++ Sbjct: 346 RKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 377
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 79.7 bits (195), Expect = 4e-15 Identities = 37/78 (47%), Positives = 52/78 (66%) Frame = +3 Query: 291 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 S ++++G L W DD+ L + F+ G VVDA+V+ DR+TGRSRGFGFV + AI Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 471 AALDGQSLEGRALRVNVA 524 + +DG+ L GR +RVN A Sbjct: 94 SEMDGKELNGRHIRVNPA 111 Score = 52.4 bits (124), Expect = 8e-07 Identities = 29/79 (36%), Positives = 42/79 (53%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L + D L F G V ++VI +RET +SRGFGFV + A A+ Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 195 FHRYDVNGRLLTVNKAAPR 251 ++NGR + VN A R Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 79.3 bits (194), Expect = 6e-15 Identities = 42/149 (28%), Positives = 84/149 (56%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG L ++ E L++ F + G + V+ N E+ +SRGFGFVT + ++ Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + ++GR + PR +++P + G +++++G LP V ++ L F+ +GKV Sbjct: 68 -GPHTLDGRTIDPKPCNPR--TLQKPKK--GGGYKVFLGGLPSNVTETDLRTFFNRYGKV 122 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELD 461 + ++YD++ +SRGFGF++ + ++ Sbjct: 123 TEVVIMYDQEKKKSRGFGFLSFEEESSVE 151 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 473 +++VG L W+ L F G ++D V+ + ++GRSRGFGFVT A ++ + Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 474 ---ALDGQSLE 497 LDG++++ Sbjct: 68 GPHTLDGRTID 78
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 79.3 bits (194), Expect = 6e-15 Identities = 42/152 (27%), Positives = 80/152 (52%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ E L +EQ G + V+ + + +SRGFGFVT S + E + A+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + ++GR++ +A R + P + +++VG + ++ L E F E+GK+ Sbjct: 70 -RPHTIDGRVVEPKRAVAREESAK--PGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKI 126 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++ D+ +G+ RGF FVT + +D + Sbjct: 127 DSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158 Score = 46.2 bits (108), Expect = 5e-05 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 473 ++++G L ++ + L + + G + D V+ D + RSRGFGFVT + E+D A+A Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 474 ---ALDGQSLE 497 +DG+ +E Sbjct: 70 RPHTIDGRVVE 80
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 79.3 bits (194), Expect = 6e-15 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VYV NLP ++ + L + F + G + S V+ ++ SR FGFV + E A AVE Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDIS-SAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 285 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPR----------DSGSSFRIYVGNLPWQVDDSRLV 347 + + +L V +A + R E R + +Y+ NL V+D +L Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 345 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 E+FSE+G V +V+ + G SRGFGFV ++ EE A+ ++G+ + + L V +A Sbjct: 346 EMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403 Score = 71.2 bits (173), Expect = 2e-12 Identities = 49/172 (28%), Positives = 82/172 (47%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + V++ NL +D++ L + F G + +V + +S+G+GFV E A+ A+ Sbjct: 131 KGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAI 189 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + + +N + + V R R S +YV NLP ++ D L + F ++G Sbjct: 190 DKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYG 249 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + A V+ D+ +G SR FGFV S E A+ ++G SL L V A Sbjct: 250 DISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 300 Score = 43.1 bits (100), Expect = 5e-04 Identities = 29/99 (29%), Positives = 52/99 (52%) Frame = +3 Query: 219 RLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYD 398 ++ V AA ++ P S +YVG+L V++S L++LF++ V + RV D Sbjct: 25 QVAAVAAAAAAAEALQTHPNSS-----LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD 79 Query: 399 RDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 T RS G+ +V A+ E+ A+ +L+ + R +R+ Sbjct: 80 L-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRI 117
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 79.3 bits (194), Expect = 6e-15 Identities = 45/152 (29%), Positives = 81/152 (53%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ + L + FEQ G + V+ + +T +SRGFGFVT S +EE + ++ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + V+GR++ +A R P + +I+VG + ++ L + F +GK+ Sbjct: 88 -RPHKVDGRVVEPKRAVSREDSAR--PGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKI 144 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 V+ DR +G+ RGF FVT + +D + Sbjct: 145 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176 Score = 55.5 bits (132), Expect = 9e-08 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 4/79 (5%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P++ ++++G L ++ D L E F + GK+ D V+ D T RSRGFGFVT + E Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 453 ELDDAIAA----LDGQSLE 497 E+D +++A +DG+ +E Sbjct: 80 EVDASMSARPHKVDGRVVE 98
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 79.0 bits (193), Expect = 8e-15 Identities = 34/77 (44%), Positives = 54/77 (70%) Frame = +3 Query: 294 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 +R +VG L W + L F+ +G+++D++V+ DR+TGRSRGFGFVT +S+ + DAI Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67 Query: 474 ALDGQSLEGRALRVNVA 524 ++G+ L+GR + VN A Sbjct: 68 NMNGKELDGRNITVNQA 84 Score = 61.2 bits (147), Expect = 2e-09 Identities = 33/82 (40%), Positives = 49/82 (59%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E + +VG L + +E L F G + S+VI +RET +SRGFGFVT S+ A+ Sbjct: 7 EYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAI 66 Query: 189 EMFHRYDVNGRLLTVNKAAPRG 254 E + +++GR +TVN+A RG Sbjct: 67 ENMNGKELDGRNITVNQAQSRG 88
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 78.6 bits (192), Expect = 1e-14 Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 1/173 (0%) Frame = +3 Query: 9 EAKVYV-GNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 E+K V NL Y E L ++FE+A ++V + + + S+G+ F+ ++ E+A++A Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGK----SKGYAFIEFASFEDAKEA 541 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 + ++ ++ GR + + PRG+ P S S ++V L + L E F Sbjct: 542 LNSCNKMEIEGRTIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEETLKESFEGS 597 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ A Sbjct: 598 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 647 Score = 64.3 bits (155), Expect = 2e-10 Identities = 42/167 (25%), Positives = 86/167 (51%), Gaps = 3/167 (1%) Frame = +3 Query: 30 NLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYD 209 NL +++ + L ++FE A VE+ V + +S+G ++ + +AEK +E + Sbjct: 402 NLSFNITEDELKEVFEDA--VEIRLV---SQDGRSKGIAYIEFKSEADAEKNLEEKQGAE 456 Query: 210 VNGRLLTVNKAAPRGARVERPPRD---SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVD 380 ++GR +++ +G R ER ++ SG S + + NL + + L E+F + + Sbjct: 457 IDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI-- 514 Query: 381 ARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 V G+S+G+ F+ AS E+ +A+ + + +EGR +R+ + Sbjct: 515 --KVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 559 Score = 47.0 bits (110), Expect = 3e-05 Identities = 27/79 (34%), Positives = 46/79 (58%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V L D E L + FE G V + ++ +RET S+GFGFV ++ E+A+ A E Sbjct: 576 LFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632 Query: 198 HRYDVNGRLLTVNKAAPRG 254 +++G +T++ A P+G Sbjct: 633 EDGEIDGNKVTLDWAKPKG 651 Score = 43.9 bits (102), Expect = 3e-04 Identities = 32/129 (24%), Positives = 61/129 (47%) Frame = +3 Query: 123 TDQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRI 302 T +R FG+V + E+ EKA+E+ V G + + K R ++ R R + Sbjct: 346 TGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGRDSKKVRAAR------TL 398 Query: 303 YVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD 482 NL + + + L E+F + V+ R+V GRS+G ++ S+ + + + Sbjct: 399 LAKNLSFNITEDELKEVFED---AVEIRLV--SQDGRSKGIAYIEFKSEADAEKNLEEKQ 453 Query: 483 GQSLEGRAL 509 G ++GR++ Sbjct: 454 GAEIDGRSV 462
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 78.6 bits (192), Expect = 1e-14 Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 11/180 (6%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +YVGNL DV + QLF Q G + ++I +T + + FV A A+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSS-----------FRIYVGNLPWQVDDSRL 344 + + G+ + VN A ++ +D+ SS F ++VG+L Q+ + Sbjct: 67 NGRKIMGKEVKVNWATTPSSQ----KKDTSSSTVVSTQRSQNHFHVFVGDLSPQITTEDI 122 Query: 345 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 F+ G++ DARVV D TG+S+G+GFV+ ++ + ++AI + GQ L GR +R N A Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 77.8 bits (190), Expect = 2e-14 Identities = 44/152 (28%), Positives = 80/152 (52%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ E L + FEQ G + V+ + + +SRGFGFVT + +E + A+ Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + V+GR++ +A R P + +I+VG + ++ L E F ++GK+ Sbjct: 75 -RPHKVDGRVVEPKRAVSR--EDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKI 131 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++ DR +G+ RGF FVT + +D + Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163 Score = 52.4 bits (124), Expect = 8e-07 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P + ++++G L ++ D L E F + G + D V+ D ++ RSRGFGFVT S + Sbjct: 7 PNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTD 66 Query: 453 ELDDAIAA----LDGQSLE 497 E+D A+ A +DG+ +E Sbjct: 67 EVDAAMTARPHKVDGRVVE 85 Score = 51.2 bits (121), Expect = 2e-06 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK-AVE 191 K++VG + D + + L + FEQ G +EV E++ +R + + RGF FVT + +K ++ Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQ 165 Query: 192 MFHRYDVNGRLLTVNKAAPRG--ARVERPPRDSGSS 293 +H VN V KA + A V R+ G S Sbjct: 166 KYH--TVNNHNSQVRKALSKQEMASVSGSQRERGGS 199
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 77.4 bits (189), Expect = 2e-14 Identities = 55/173 (31%), Positives = 90/173 (52%), Gaps = 1/173 (0%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A +Y+GNL V L +L QAG V + +R + GFGF ++ E A Sbjct: 10 DATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYAC 69 Query: 189 EMFHRYDVNGRLLTVNKAAP-RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 ++ ++ + G+ + VN+A+ RG ++ ++VGNL VD+ L + FS Sbjct: 70 QILNQVKLFGKPIRVNRASQDRGV-------NTLIGANLFVGNLDPLVDERVLYDTFSAL 122 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 G++V A V + GRS+G+GFV+ S E D AI A++ Q L + + V+ A Sbjct: 123 GQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYA 175 Score = 49.3 bits (116), Expect = 6e-06 Identities = 29/82 (35%), Positives = 42/82 (51%) Frame = +3 Query: 279 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 458 D IY+GNL +V DS L EL + G VV+ + DR GFGF ++++ Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65 Query: 459 DDAIAALDGQSLEGRALRVNVA 524 + A L+ L G+ +RVN A Sbjct: 66 EYACQILNQVKLFGKPIRVNRA 87 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/86 (30%), Positives = 44/86 (51%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 A ++VGNL VD L F G + + + E +S+G+GFV+ + E A+ A+E Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIE 158 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVER 269 + + + +TV+ A R + ER Sbjct: 159 AMNNQFLMNKPITVSYAFKREGKGER 184
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 77.4 bits (189), Expect = 2e-14 Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 11/180 (6%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +YVGNL DV + QLF Q G + ++I +T + + FV A A+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSS-----------FRIYVGNLPWQVDDSRL 344 + + G+ + VN A ++ +D+ SS F ++VG+L ++ + Sbjct: 67 NGRKIMGKEVKVNWATTPSSQ----KKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122 Query: 345 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 F+ G++ DARVV D TG+S+G+GFV+ ++ + ++AI + GQ L GR +R N A Sbjct: 123 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 77.0 bits (188), Expect = 3e-14 Identities = 44/152 (28%), Positives = 80/152 (52%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L ++ + L + FEQ G + V+ + +T +SRGFGFVT S +EE + ++ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + V+GR++ +A R P + +I+VG + ++ L + +GK+ Sbjct: 88 -RPHKVDGRVVEPKRAVSREDSAR--PGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKI 144 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 V+ DR +G+ RGF FVT + +D + Sbjct: 145 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176 Score = 55.5 bits (132), Expect = 9e-08 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 4/79 (5%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P++ ++++G L ++ D L E F + GK+ D V+ D T RSRGFGFVT + E Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 453 ELDDAIAA----LDGQSLE 497 E+D +++A +DG+ +E Sbjct: 80 EVDASMSARPHKVDGRVVE 98
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 77.0 bits (188), Expect = 3e-14 Identities = 47/146 (32%), Positives = 77/146 (52%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L + E L + F Q G V+ V+ + T +SRGFGFVT +K + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 R++++ + + A PR A+ + R +I+VG L + + F + GKV Sbjct: 81 -SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKQYFEQFGKV 135 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQE 452 DA +++D+ T R RGFGFVT S++ Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESED 161 Score = 57.4 bits (137), Expect = 2e-08 Identities = 27/79 (34%), Positives = 50/79 (63%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG L + E + Q FEQ G V+ + +++++ T++ RGFGFVT + + EK E+ Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169 Query: 195 FHRYDVNGRLLTVNKAAPR 251 H +++N +++ KA P+ Sbjct: 170 -HFHEINNKMVECKKAQPK 187 Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 ++++G L WQ L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 76.3 bits (186), Expect = 5e-14 Identities = 47/146 (32%), Positives = 76/146 (52%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L + E L + F Q G V+ V+ + T +SRGFGFVT +K + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 R++++ + + A PR A+ + R +I+VG L + F + GKV Sbjct: 81 -SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKV 135 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQE 452 DA +++D+ T R RGFGFVT S++ Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESED 161 Score = 55.5 bits (132), Expect = 9e-08 Identities = 26/79 (32%), Positives = 49/79 (62%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG L + E + FEQ G V+ + +++++ T++ RGFGFVT + + EK E+ Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169 Query: 195 FHRYDVNGRLLTVNKAAPR 251 H +++N +++ KA P+ Sbjct: 170 -HFHEINNKMVECKKAQPK 187 Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 ++++G L WQ L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 76.3 bits (186), Expect = 5e-14 Identities = 47/146 (32%), Positives = 76/146 (52%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L + E L + F Q G V+ V+ + T +SRGFGFVT +K + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 R++++ + + A PR A+ + R +I+VG L + F + GKV Sbjct: 81 -SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKV 135 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQE 452 DA +++D+ T R RGFGFVT S++ Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESED 161 Score = 55.5 bits (132), Expect = 9e-08 Identities = 26/79 (32%), Positives = 49/79 (62%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG L + E + FEQ G V+ + +++++ T++ RGFGFVT + + EK E+ Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169 Query: 195 FHRYDVNGRLLTVNKAAPR 251 H +++N +++ KA P+ Sbjct: 170 -HFHEINNKMVECKKAQPK 187 Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 ++++G L WQ L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 76.3 bits (186), Expect = 5e-14 Identities = 44/154 (28%), Positives = 83/154 (53%), Gaps = 2/154 (1%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRE--TDQSRGFGFVTMSTIEEAEKAV 188 K++VG L + + + + + Q G E++++I R+ T +SRGFGFVT S E + A+ Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFG--EITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + + ++G+ + +A PR + + S+ R+YV + + L E F+++G Sbjct: 82 KQ-RPHIIDGKTVDPKRAVPRDDK--NRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYG 138 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 V + ++ D+ T + RGFGFVT + +D + Sbjct: 139 TVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172 Score = 50.8 bits (120), Expect = 2e-06 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 473 +I+VG L D + E +S+ G++ D V+ D T RSRGFGFVT + + E+D A+ Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83 Query: 474 ---ALDGQSLE 497 +DG++++ Sbjct: 84 RPHIIDGKTVD 94
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 76.3 bits (186), Expect = 5e-14 Identities = 48/156 (30%), Positives = 85/156 (54%), Gaps = 4/156 (2%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMST---IEEAEKA 185 K+++G L Y + L FE+ G + V+ + +T +SRGFGF+T S I+ A+ A Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFR-IYVGNLPWQVDDSRLVELFSE 362 + ++GR + +A PR ++ P ++G++ + ++VG L D+ L E F + Sbjct: 85 ----RPHKIDGRTVEPKRAVPR-QEIDSP--NAGATVKKLFVGGLRDDHDEECLREYFKD 137 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 G++V +V D+DTG+ RGF F+ + +D I Sbjct: 138 FGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 75.1 bits (183), Expect = 1e-13 Identities = 43/149 (28%), Positives = 78/149 (52%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L + + L F + G + V+ + T +SRGFGFVT + +K + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 H ++++ + + A PR A+ + R +I+VG L + + F + GKV Sbjct: 82 PH-HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSANTVVEDVKQYFEQFGKV 136 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELD 461 DA +++D+ T R RGFGFVT +++ ++ Sbjct: 137 EDAMLMFDKTTNRHRGFGFVTFENEDVVE 165 Score = 58.5 bits (140), Expect = 1e-08 Identities = 35/106 (33%), Positives = 59/106 (55%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG L + E + Q FEQ G VE + +++++ T++ RGFGFVT + EK E+ Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 332 H +++N +++ KA P+ V PP G + LP+ +D Sbjct: 171 -HFHEINNKMVECKKAQPK--EVMFPPGTRGRA-----RGLPYTMD 208 Score = 50.1 bits (118), Expect = 4e-06 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++++G L WQ L + FS+ G++ + V+ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 75.1 bits (183), Expect = 1e-13 Identities = 43/149 (28%), Positives = 78/149 (52%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L + + L F + G + V+ + T +SRGFGFVT + +K + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 H ++++ + + A PR A+ + R +I+VG L + + F + GKV Sbjct: 82 PH-HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSANTVVEDVKQYFEQFGKV 136 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELD 461 DA +++D+ T R RGFGFVT +++ ++ Sbjct: 137 EDAMLMFDKTTNRHRGFGFVTFENEDVVE 165 Score = 58.5 bits (140), Expect = 1e-08 Identities = 35/106 (33%), Positives = 59/106 (55%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG L + E + Q FEQ G VE + +++++ T++ RGFGFVT + EK E+ Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 332 H +++N +++ KA P+ V PP G + LP+ +D Sbjct: 171 -HFHEINNKMVECKKAQPK--EVMFPPGTRGRA-----RGLPYTMD 208 Score = 50.1 bits (118), Expect = 4e-06 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++++G L WQ L + FS+ G++ + V+ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 74.3 bits (181), Expect = 2e-13 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 2/172 (1%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VGNL + +E + LF Q G + +++ + FGFV M + EA++A++ Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQN 54 Query: 195 FHRYDVNGRLLTV--NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 H Y +NG + V +K P+ +S +++VGN+ + L F E+G Sbjct: 55 LHHYMLNGMAMNVEMSKGKPK------------TSTKLHVGNISSSCTNQELRAKFEEYG 102 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 VV+ +V D + FV M E+ +AI+ LD + +G+ + V ++ Sbjct: 103 PVVECDIVKD--------YAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLS 146
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 73.6 bits (179), Expect = 3e-13 Identities = 36/86 (41%), Positives = 54/86 (62%) Frame = +3 Query: 267 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 446 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 447 QEELDDAIAALDGQSLEGRALRVNVA 524 QE A+ L+G+ GRALRV+ A Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNA 92 Score = 57.0 bits (136), Expect = 3e-08 Identities = 27/76 (35%), Positives = 44/76 (57%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+VGN+PY+ E+L +F + G V ++Y+RET + +G+GF E A A+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 198 HRYDVNGRLLTVNKAA 245 + + +GR L V+ AA Sbjct: 78 NGREFSGRALRVDNAA 93
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 73.6 bits (179), Expect = 3e-13 Identities = 36/86 (41%), Positives = 54/86 (62%) Frame = +3 Query: 267 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 446 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 447 QEELDDAIAALDGQSLEGRALRVNVA 524 QE A+ L+G+ GRALRV+ A Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNA 92 Score = 57.0 bits (136), Expect = 3e-08 Identities = 27/76 (35%), Positives = 44/76 (57%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+VGN+PY+ E+L +F + G V ++Y+RET + +G+GF E A A+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 198 HRYDVNGRLLTVNKAA 245 + + +GR L V+ AA Sbjct: 78 NGREFSGRALRVDNAA 93
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 73.2 bits (178), Expect = 4e-13 Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 1/156 (0%) Frame = +3 Query: 6 HEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 H K+++G L E L + Q G V V+ + T +SRGFGF+T + ++A Sbjct: 30 HLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA 89 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFR-IYVGNLPWQVDDSRLVELFSE 362 E + ++G+ + +A PR ER R++ S + ++VG L D+ L E F + Sbjct: 90 QEN-RPHIIDGKTVEAKRALPRP---ERESRETNISVKKLFVGGLKDNHDEECLREYFLQ 145 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 G VV +++ D+ TG+ RGF FV + +D AI Sbjct: 146 FGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 73.2 bits (178), Expect = 4e-13 Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 41/210 (19%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLF-EQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 +V++ N+PYD+ + + L E+ G V E+ + E +SRG G V E +KA+E Sbjct: 92 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALE 150 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFR------------------------ 299 ++YD++GR L + K P G R + +G+SF+ Sbjct: 151 TMNKYDLSGRPLNI-KEDPDGENARRALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNI 209 Query: 300 ----------------IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGF 431 I+V NL ++V +L E+FS G V A + D+D G+SRG G Sbjct: 210 PPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGT 268 Query: 432 VTMASQEELDDAIAALDGQSLEGRALRVNV 521 VT E AI+ +GQ L R + V + Sbjct: 269 VTFEQAIEAVQAISMFNGQFLFDRPMHVKM 298 Score = 46.2 bits (108), Expect = 5e-05 Identities = 24/73 (32%), Positives = 42/73 (57%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++V NLP+D+ ++L + F Q G V +E+ E +S+G G V + E AEKA + Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFESAESAEKACRI 572 Query: 195 FHRYDVNGRLLTV 233 + ++GR + V Sbjct: 573 MNGIKISGREIDV 585 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +I+V NLP+ + +L E FS+ G V+ A + + G+S+G G V S E + A Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFESAESAEKACRI 572 Query: 477 LDGQSLEGRALRVNV 521 ++G + GR + V + Sbjct: 573 MNGIKISGREIDVRL 587
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 73.2 bits (178), Expect = 4e-13 Identities = 36/86 (41%), Positives = 54/86 (62%) Frame = +3 Query: 267 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 446 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 447 QEELDDAIAALDGQSLEGRALRVNVA 524 QE A+ L+G+ GRALRV+ A Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNA 92 Score = 57.4 bits (137), Expect = 2e-08 Identities = 29/91 (31%), Positives = 49/91 (53%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+VGN+PY+ E+L +F + G V ++Y+RET + +G+GF E A A+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGS 290 + + +GR L V+ AA + E +G+ Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSLGTGA 108
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 73.2 bits (178), Expect = 4e-13 Identities = 36/86 (41%), Positives = 54/86 (62%) Frame = +3 Query: 267 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 446 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 447 QEELDDAIAALDGQSLEGRALRVNVA 524 QE A+ L+G+ GRALRV+ A Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNA 92 Score = 57.4 bits (137), Expect = 2e-08 Identities = 29/91 (31%), Positives = 49/91 (53%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+VGN+PY+ E+L +F + G V ++Y+RET + +G+GF E A A+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGS 290 + + +GR L V+ AA + E +G+ Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSLGTGA 108
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 73.2 bits (178), Expect = 4e-13 Identities = 36/86 (41%), Positives = 54/86 (62%) Frame = +3 Query: 267 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 446 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 447 QEELDDAIAALDGQSLEGRALRVNVA 524 QE A+ L+G+ GRALRV+ A Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNA 92 Score = 57.4 bits (137), Expect = 2e-08 Identities = 29/91 (31%), Positives = 49/91 (53%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+VGN+PY+ E+L +F + G V ++Y+RET + +G+GF E A A+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGS 290 + + +GR L V+ AA + E +G+ Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSLGTGA 108
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 73.2 bits (178), Expect = 4e-13 Identities = 36/86 (41%), Positives = 54/86 (62%) Frame = +3 Query: 267 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 446 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 447 QEELDDAIAALDGQSLEGRALRVNVA 524 QE A+ L+G+ GRALRV+ A Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNA 92 Score = 57.4 bits (137), Expect = 2e-08 Identities = 29/91 (31%), Positives = 49/91 (53%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+VGN+PY+ E+L +F + G V ++Y+RET + +G+GF E A A+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGS 290 + + +GR L V+ AA + E +G+ Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSLGTGA 108
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 72.8 bits (177), Expect = 5e-13 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 16/185 (8%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++VG LP SE+L +LF Q G V+ V+ + + RGFG+VT S +E+ ++A++ Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSG----------------SSFRIYVGNLPWQV 329 ++ +TV K R E+ ++ R+ + NL ++ Sbjct: 65 TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKC 124 Query: 330 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 + L +F++ G V++ + D G+ RGFGFV + E A+ ++ + ++GR + Sbjct: 125 SEDDLKTVFAQFGAVLEVNIPRKPD-GKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTV 183 Query: 510 RVNVA 524 V+ A Sbjct: 184 AVDWA 188 Score = 43.9 bits (102), Expect = 3e-04 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 6/128 (4%) Frame = +3 Query: 159 STIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 338 ST E+ +KAV++ ++ + + P D +++ NL + ++ Sbjct: 307 STEEQEDKAVQVSNK------------------KKRKLPSDVNEGKTVFIRNLSFDSEEE 348 Query: 339 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD------GQSLEG 500 L EL + G++ R+V DT S+G F +QE + A G L+G Sbjct: 349 ELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDG 408 Query: 501 RALRVNVA 524 R L+V++A Sbjct: 409 RQLKVDLA 416 Score = 40.4 bits (93), Expect = 0.003 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETD-QSRGFGFVTMSTIEEAEKA 185 +A++ + NL + + L +F Q G V EV R+ D + RGFGFV + EA KA Sbjct: 112 KARLIIRNLSFKCSEDDLKTVFAQFGAV--LEVNIPRKPDGKMRGFGFVQFKNLLEAGKA 169 Query: 186 VEMFHRYDVNGRLLTVNKAAPR 251 ++ + ++ GR + V+ A + Sbjct: 170 LKGMNMKEIKGRTVAVDWAVAK 191
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 72.0 bits (175), Expect = 9e-13 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 2/176 (1%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R + V NL Y E L +LF++A +++ + + +G+ FV T E+A++ Sbjct: 458 RESKTLIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKE 513 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRD--SGSSFRIYVGNLPWQVDDSRLVELF 356 A+ + ++ GR + + ++P + R + S ++V L + L E F Sbjct: 514 ALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESF 573 Query: 357 SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + AR+V DRDTG S+GFGFV +S E+ A A++ ++G + ++ A Sbjct: 574 EGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFA 626 Score = 71.6 bits (174), Expect = 1e-12 Identities = 47/171 (27%), Positives = 85/171 (49%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R ++V NLPY V + + +FE A +EV ++ N+E S+G ++ T EAEK Sbjct: 368 RDARTLFVKNLPYRVTEDEMKNVFENA--LEV-RLVLNKE-GSSKGMAYIEFKTEAEAEK 423 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSE 362 A+E +V+GR + ++ + + + S + V NL + + L ELF Sbjct: 424 ALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELF-- 481 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 K + + + GR +G+ FV + E+ +A+ + + +EGRA+R+ Sbjct: 482 --KKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 530 Score = 48.1 bits (113), Expect = 1e-05 Identities = 40/171 (23%), Positives = 88/171 (51%), Gaps = 4/171 (2%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQ---AGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 ++V NL D E L ++ ++VSEV S+ FG+V + E+ +KA+ Sbjct: 283 LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEV----RIGSSKRFGYVDFLSAEDMDKAL 338 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVE-RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 ++ + + G + + KA + + E + RD+ + ++V NLP++V + + +F Sbjct: 339 QLNGK-KLMGLEIKLEKAKSKESLKENKKERDART---LFVKNLPYRVTEDEMKNVFEN- 393 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 ++ R+V +++ G S+G ++ ++ E + A+ G ++GRA+ ++ Sbjct: 394 --ALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVID 441 Score = 46.6 bits (109), Expect = 4e-05 Identities = 26/79 (32%), Positives = 46/79 (58%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V L D E L + FE G + + ++ +R+T S+GFGFV S+ E+A+ A E Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611 Query: 198 HRYDVNGRLLTVNKAAPRG 254 +++G +T++ A P+G Sbjct: 612 EDGEIDGNKVTLDFAKPKG 630
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 72.0 bits (175), Expect = 9e-13 Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 41/210 (19%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLF-EQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 +V++ N+PYD+ + + L E+ G V E+ + E +SRG G V E +KA+E Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALE 159 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF------------------------- 296 ++YD++GR L + K P G R + +G SF Sbjct: 160 TMNKYDLSGRPLNI-KEDPDGENARRALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNI 218 Query: 297 ---------------RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGF 431 I+V NL ++V +L E+FS G V A + D+D G+SRG G Sbjct: 219 PPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGT 277 Query: 432 VTMASQEELDDAIAALDGQSLEGRALRVNV 521 VT E AI+ +GQ L R + V + Sbjct: 278 VTFEQAIEAVQAISMFNGQFLFDRPMHVKM 307 Score = 45.4 bits (106), Expect = 9e-05 Identities = 24/73 (32%), Positives = 42/73 (57%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++V NLP+D+ ++L + F Q G V +E+ E +S+G G V + E AEKA + Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFDSPESAEKACRI 581 Query: 195 FHRYDVNGRLLTV 233 + ++GR + V Sbjct: 582 MNGIKISGREIDV 594 Score = 41.6 bits (96), Expect = 0.001 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +I+V NLP+ + +L E FS+ G V+ A + + G+S+G G V S E + A Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFDSPESAEKACRI 581 Query: 477 LDGQSLEGRALRVNV 521 ++G + GR + V + Sbjct: 582 MNGIKISGREIDVRL 596
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 71.6 bits (174), Expect = 1e-12 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 10/179 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +Y+ NL DV + L + F + G + VS I E RG+ FV E+A +A E Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKI-VSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261 Query: 198 HRYDVNGRLLTVNKAAPRGARVE----------RPPRDSGSSFRIYVGNLPWQVDDSRLV 347 + + L V +A + R + + IYV N+ V + L Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + FS+ G + +++ D + G+S+GFGFV ++ EE DA+ GQ G+ L V +A Sbjct: 322 KHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379 Score = 60.8 bits (146), Expect = 2e-09 Identities = 48/169 (28%), Positives = 81/169 (47%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+V NLP V + L +F++ G + VS + E +SRG+GFV + A A++ Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNI-VSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVV 377 + V + + V K + RV+ P + ++ +Y+ NL V + L E F+E GK+V Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVK--PEEKYTN--LYMKNLDADVSEDLLREKFAEFGKIV 228 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + D + RG+ FV + E+ A ++G + L V A Sbjct: 229 SLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA 276 Score = 54.3 bits (129), Expect = 2e-07 Identities = 40/168 (23%), Positives = 77/168 (45%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 A +YVG+L V L F + + + + + +S +G+ + ++A A+E Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 + +NG+++ V + V P ++V NLP V ++ L ++F + G Sbjct: 84 KKNNSLLNGKMIRVMWS------VRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGN 137 Query: 372 VVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 +V +V D G+SRG+GFV ++ AI L+ + + + V Sbjct: 138 IVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 71.2 bits (173), Expect = 2e-12 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 7/176 (3%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E ++V NL +D E L +LF G V +++I ++ RG G V + E + A+ Sbjct: 121 ENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAI 178 Query: 189 EMFHRYDVNGRLLTVNKAAPR-------GARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 347 F R L V + P + R D+G F +++ NLP+ ++ L Sbjct: 179 SKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDNG--FEVFIINLPYSMNWQSLK 236 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 ++F E G V+ A V D + G SRGFG V +++E+ AI +G +EGR L V Sbjct: 237 DMFKECGHVLRADVELDFN-GFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEV 291 Score = 49.3 bits (116), Expect = 6e-06 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 38/208 (18%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +V++ NLPY ++ + L +F++ G V ++V + SRGFG V T +E +A++ Sbjct: 220 EVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFN-GFSRGFGSVIYPTEDEMIRAIDT 278 Query: 195 FHRYDVNGRLLTVNK-----------------------------AAPRGARVERP----- 272 F+ +V GR+L V + A ++ Sbjct: 279 FNGMEVEGRVLEVREGRFNKRKNNDRYNQRREDLEDTRGTEPGLAQDAAVHIDETAAKFT 338 Query: 273 ----PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 440 P + F IY NLP+ S L +LF GK+ +A + ++ G+ G V Sbjct: 339 EGVNPGGDRNCF-IYCSNLPFSTARSDLFDLFGPIGKINNAE-LKPQENGQPTGVAVVEY 396 Query: 441 ASQEELDDAIAALDGQSLEGRALRVNVA 524 + + D I L+ + G +L+++ A Sbjct: 397 ENLVDADFCIQKLNNYNYGGCSLQISYA 424
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 71.2 bits (173), Expect = 2e-12 Identities = 44/171 (25%), Positives = 81/171 (47%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R ++V N+PY E L ++FE A + + + ++G +V S +EA K Sbjct: 321 RDSRTLFVKNIPYSTTVEELQEIFENAKDIRIP----TGKDGSNKGIAYVEFSNEDEANK 376 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSE 362 A+E ++ GR + V+ + G S + V NL + + L E+F Sbjct: 377 ALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFE- 435 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 K R+ ++ GR++GF F+ +S E+ DA+ + + +EGR++R+ Sbjct: 436 --KATSIRI--PQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRL 482 Score = 69.7 bits (169), Expect = 5e-12 Identities = 45/167 (26%), Positives = 84/167 (50%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V NL Y + L ++FE+A + + + +++GF F+ S+ E+A+ A++ + Sbjct: 418 VNNLSYSATEDSLREVFEKATSIRIPQ-----NQGRAKGFAFIEFSSAEDAKDAMDSCNN 472 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 383 ++ GR + + + G + S S ++V L + L E F V+A Sbjct: 473 TEIEGRSIRLEFSQGGGPQ-GGGRGGSAQSKTLFVRGLSEDTTEETLKEAFDGS---VNA 528 Query: 384 RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 R+V DRDTG S+GFGFV ++ E+ A A++ ++G + ++ A Sbjct: 529 RIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFA 575 Score = 54.3 bits (129), Expect = 2e-07 Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 4/171 (2%) Frame = +3 Query: 18 VYVGNL----PYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 +++GNL +D + L + F + + I + S+ FG+V S+ EE EKA Sbjct: 234 IFIGNLNSTKEFDELKDALREFFSKKNLT-----IQDIRIGNSKKFGYVDFSSEEEVEKA 288 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 +++ + + G + + KA + S ++V N+P+ L E+F E+ Sbjct: 289 LKLTGK-KILGTEVKIEKAMAFDKNKTAENKKERDSRTLFVKNIPYSTTVEELQEIF-EN 346 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 K D R+ +D G ++G +V ++++E + A+ G +EGR++ V+ Sbjct: 347 AK--DIRIPTGKD-GSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVD 394 Score = 48.1 bits (113), Expect = 1e-05 Identities = 27/79 (34%), Positives = 46/79 (58%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V L D E L + F+ G V + ++ +R+T S+GFGFV ST E+A+ A E Sbjct: 504 LFVRGLSEDTTEETLKEAFD--GSVN-ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAM 560 Query: 198 HRYDVNGRLLTVNKAAPRG 254 +++G +T++ A P+G Sbjct: 561 EDGEIDGNKVTLDFAKPKG 579 Score = 32.0 bits (71), Expect = 1.1 Identities = 24/96 (25%), Positives = 44/96 (45%) Frame = +3 Query: 237 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 416 K P + + G S I++GNL + L + E + + D G S Sbjct: 215 KTIPEAKKTKTDTASEGLS--IFIGNLNSTKEFDELKDALREFFSKKNL-TIQDIRIGNS 271 Query: 417 RGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + FG+V +S+EE++ A+ L G+ + G +++ A Sbjct: 272 KKFGYVDFSSEEEVEKAL-KLTGKKILGTEVKIEKA 306
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 71.2 bits (173), Expect = 2e-12 Identities = 34/81 (41%), Positives = 52/81 (64%) Frame = +3 Query: 282 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 461 S +++VG L + D+ L + FS G + + VV DR+T RSRGFGF+T + E Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61 Query: 462 DAIAALDGQSLEGRALRVNVA 524 DA+ A++G+SL+GR +RV+ A Sbjct: 62 DAMRAMNGESLDGRQIRVDHA 82 Score = 57.0 bits (136), Expect = 3e-08 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E K++VG L ++ D + L F G + V+ +RET +SRGFGF+T + E A A+ Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAM 64 Query: 189 EMFHRYDVNGRLLTVNKA--APRGAR 260 + ++GR + V+ A + RG+R Sbjct: 65 RAMNGESLDGRQIRVDHAGKSARGSR 90
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 71.2 bits (173), Expect = 2e-12 Identities = 49/170 (28%), Positives = 85/170 (50%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++GNL + L LFE+ G V +V+ N +GFV M T ++ A++ Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQN 59 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + Y +N + V A R A + + +I+VGNL + + ELF ++G V Sbjct: 60 LNGYTLNEFAIKVEAAKSRRA-------PNTPTTKIFVGNLTDKTRAPEVRELFQKYGTV 112 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 V+ +V R +GFV + ++ DAI L+G+ ++G+ L+V V+ Sbjct: 113 VECDIV--------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS 154
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 70.9 bits (172), Expect = 2e-12 Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 11/175 (6%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQ---SRGFGFVTMSTIEEAEKAV 188 +++ NL +D E+L ++F + G V+ + + S GFGFV E+A+KA+ Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791 Query: 189 EMFHRYDVNGRLLTVN------KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 350 + + V+G L V K A AR ++ PR +S +I V N+P+Q + E Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTS-KILVRNIPFQAHSREIRE 850 Query: 351 LFSEHGKVVDARVVYD-RDTGRSRGFGFVTMASQEELDDAIAAL-DGQSLEGRAL 509 LFS G++ R+ TG RGFGFV ++++ A AL L GR L Sbjct: 851 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRL 905 Score = 57.8 bits (138), Expect = 2e-08 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 17/177 (9%) Frame = +3 Query: 36 PYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDVN 215 P++V + + + V + ++ N +++ G+ FV S EE ++A++ Y + Sbjct: 302 PFNVTEKNVMEFLAPLKPVAI-RIVRNAHGNKT-GYIFVDFSNEEEVKQALKCNREY-MG 358 Query: 216 GRLLTV--------NKAAPRGARVERPPR---------DSGSSFRIYVGNLPWQVDDSRL 344 GR + V K AP+ R D S R++V NLP+ + L Sbjct: 359 GRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDL 418 Query: 345 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 +LFS++G + + D T + +GF F+T E A + +DGQ +GR L V Sbjct: 419 EKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHV 475 Score = 42.4 bits (98), Expect = 8e-04 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 22/146 (15%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 +++ V NLP + ER QLF G + + + ++ + R FGF+ + EEA+KA + Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKAQK 60 Query: 192 MFHRYDVNGRLLTV---------------NKAAPRGARVERPPRDS-------GSSFRIY 305 F++ ++ +TV +K A + ++ ++PP+DS + Sbjct: 61 HFNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKDEKKKKV 120 Query: 306 VGNLPWQVDDSRLVELFSEHGKVVDA 383 G L +D+ E S H + A Sbjct: 121 AGQLEKLKEDTEFQEFLSVHQRRAQA 146 Score = 38.1 bits (87), Expect = 0.015 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 467 R+ V NLP + + R +LF+ G + D + + +D G+ R FGF+ S+EE A Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKA 58 Score = 37.7 bits (86), Expect = 0.019 Identities = 23/73 (31%), Positives = 34/73 (46%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++V NLPY E L +LF + G + + T + +GF F+T E A KA Sbjct: 403 RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462 Query: 195 FHRYDVNGRLLTV 233 GR+L V Sbjct: 463 VDGQVFQGRMLHV 475 Score = 35.8 bits (81), Expect = 0.073 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRE-TDQSRGFGFVTMSTIEEAEKAV 188 +K+ V N+P+ S + +LF G ++ + T RGFGFV T ++A++A Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891 Query: 189 E-MFHRYDVNGRLLTVNKA 242 + H + GR L + A Sbjct: 892 NALCHSTHLYGRRLVLEWA 910
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.5 bits (171), Expect = 3e-12 Identities = 31/76 (40%), Positives = 56/76 (73%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 477 LDGQSLEGRALRVNVA 524 ++G+S++GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82 Score = 63.5 bits (153), Expect = 3e-10 Identities = 30/78 (38%), Positives = 50/78 (64%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E K++VG L +D + + L Q+F + G + V+ +RET +SRGFGFVT I++A+ A+ Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 189 EMFHRYDVNGRLLTVNKA 242 + V+GR + V++A Sbjct: 65 MAMNGKSVDGRQIRVDQA 82
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 70.5 bits (171), Expect = 3e-12 Identities = 31/76 (40%), Positives = 56/76 (73%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 477 LDGQSLEGRALRVNVA 524 ++G+S++GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82 Score = 63.5 bits (153), Expect = 3e-10 Identities = 30/78 (38%), Positives = 50/78 (64%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E K++VG L +D + + L Q+F + G + V+ +RET +SRGFGFVT I++A+ A+ Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 189 EMFHRYDVNGRLLTVNKA 242 + V+GR + V++A Sbjct: 65 MAMNGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.5 bits (171), Expect = 3e-12 Identities = 31/76 (40%), Positives = 56/76 (73%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 477 LDGQSLEGRALRVNVA 524 ++G+S++GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82 Score = 63.5 bits (153), Expect = 3e-10 Identities = 30/78 (38%), Positives = 50/78 (64%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E K++VG L +D + + L Q+F + G + V+ +RET +SRGFGFVT I++A+ A+ Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 189 EMFHRYDVNGRLLTVNKA 242 + V+GR + V++A Sbjct: 65 MAMNGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.5 bits (171), Expect = 3e-12 Identities = 31/76 (40%), Positives = 56/76 (73%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 477 LDGQSLEGRALRVNVA 524 ++G+S++GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82 Score = 63.5 bits (153), Expect = 3e-10 Identities = 30/78 (38%), Positives = 50/78 (64%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E K++VG L +D + + L Q+F + G + V+ +RET +SRGFGFVT I++A+ A+ Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 189 EMFHRYDVNGRLLTVNKA 242 + V+GR + V++A Sbjct: 65 MAMNGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.5 bits (171), Expect = 3e-12 Identities = 31/76 (40%), Positives = 56/76 (73%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 477 LDGQSLEGRALRVNVA 524 ++G+S++GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82 Score = 63.5 bits (153), Expect = 3e-10 Identities = 30/78 (38%), Positives = 50/78 (64%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E K++VG L +D + + L Q+F + G + V+ +RET +SRGFGFVT I++A+ A+ Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 189 EMFHRYDVNGRLLTVNKA 242 + V+GR + V++A Sbjct: 65 MAMNGKSVDGRQIRVDQA 82
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 70.5 bits (171), Expect = 3e-12 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 3/174 (1%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R V+ L + L F G V +I +R + +S+G +V I+ Sbjct: 163 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL 222 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRG---ARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 353 A+ + + + ++ A + A + +G R+YVG+L + + + L + Sbjct: 223 AIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGI 282 Query: 354 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 F GK+ + ++ D DTGRS+G+GF+T + E A+ L+G L GR +RV Sbjct: 283 FEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/79 (29%), Positives = 48/79 (60%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++YVG+L +++ + L +FE G ++ ++ + +T +S+G+GF+T S E A +A+E Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323 Query: 195 FHRYDVNGRLLTVNKAAPR 251 + +++ GR + V R Sbjct: 324 LNGFELAGRPMRVGHVTER 342
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 70.5 bits (171), Expect = 3e-12 Identities = 45/185 (24%), Positives = 89/185 (48%), Gaps = 16/185 (8%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++VG LP S++L +LF Q G V+ V+ + + RGFG+VT S +E+ ++A++ Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 198 HRYD--------VNGRLLTVNKAAPRGARVERPPRD--------SGSSFRIYVGNLPWQV 329 ++ +L +K + E P ++ + R+ + NL ++ Sbjct: 65 TTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKC 124 Query: 330 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 + L +F+ +G V++ + D G+ RGF FV + E A+ + + ++GR + Sbjct: 125 SEDDLKAVFTHYGTVLEVNIPKKPD-GKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTV 183 Query: 510 RVNVA 524 V+ A Sbjct: 184 AVDWA 188 Score = 42.7 bits (99), Expect = 6e-04 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 6/90 (6%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P D +++ NL + ++ L E+ + G + RVV DT S+G F +QE Sbjct: 317 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 376 Query: 453 ELDDAIAALD------GQSLEGRALRVNVA 524 +AA G L+GR L+V++A Sbjct: 377 AAQKCLAAASPEAEGGGLKLDGRQLKVDLA 406
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 69.7 bits (169), Expect = 5e-12 Identities = 47/170 (27%), Positives = 80/170 (47%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++GNLP + + + LFEQ G V ++I N +GFV + AE A+ Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 H Y ++G + +N VE S +S +++VGN+ + L F E+G V Sbjct: 55 LHHYKLHG--VNIN--------VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPV 104 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ +V D + FV M E+ +AI LD +G+ + V ++ Sbjct: 105 IECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 69.7 bits (169), Expect = 5e-12 Identities = 47/170 (27%), Positives = 80/170 (47%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++GNLP + + + LFEQ G V ++I N +GFV + AE A+ Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 H Y ++G + +N VE S +S +++VGN+ + L F E+G V Sbjct: 55 LHHYKLHG--VNIN--------VEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPV 104 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ +V D + FV M E+ +AI LD +G+ + V ++ Sbjct: 105 IECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 69.7 bits (169), Expect = 5e-12 Identities = 47/170 (27%), Positives = 80/170 (47%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++GNLP + + + LFEQ G V ++I N +GFV + AE A+ Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 H Y ++G + +N VE S +S +++VGN+ + L F E+G V Sbjct: 55 LHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPV 104 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ +V D + FV M E+ +AI LD +G+ + V ++ Sbjct: 105 IECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 69.7 bits (169), Expect = 5e-12 Identities = 47/170 (27%), Positives = 80/170 (47%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++GNLP + + + LFEQ G V ++I N +GFV + AE A+ Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 H Y ++G + +N VE S +S +++VGN+ + L F E+G V Sbjct: 55 LHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPV 104 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ +V D + FV M E+ +AI LD +G+ + V ++ Sbjct: 105 IECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 69.7 bits (169), Expect = 5e-12 Identities = 47/170 (27%), Positives = 80/170 (47%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++GNLP + + + LFEQ G V ++I N +GFV + AE A+ Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 H Y ++G + +N VE S +S +++VGN+ + L F E+G V Sbjct: 55 LHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPV 104 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ +V D + FV M E+ +AI LD +G+ + V ++ Sbjct: 105 IECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 69.7 bits (169), Expect = 5e-12 Identities = 47/170 (27%), Positives = 80/170 (47%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++GNLP + + + LFEQ G V ++I N +GFV + AE A+ Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 H Y ++G + +N VE S +S +++VGN+ + L F E+G V Sbjct: 55 LHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPV 104 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ +V D + FV M E+ +AI LD +G+ + V ++ Sbjct: 105 IECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 69.7 bits (169), Expect = 5e-12 Identities = 47/170 (27%), Positives = 80/170 (47%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++GNLP + + + LFEQ G V ++I N +GFV + AE A+ Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 H Y ++G + +N VE S +S +++VGN+ + L F E+G V Sbjct: 55 LHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPV 104 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 ++ +V D + FV M E+ +AI LD +G+ + V ++ Sbjct: 105 IECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 69.3 bits (168), Expect = 6e-12 Identities = 36/75 (48%), Positives = 48/75 (64%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 IYVGNL + V ++ L +F+E+G V ++ DR+TGR RGFGFV + + E AI AL Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 480 DGQSLEGRALRVNVA 524 DG GR L+VN A Sbjct: 63 DGAEWMGRDLKVNKA 77 Score = 60.5 bits (145), Expect = 3e-09 Identities = 34/81 (41%), Positives = 45/81 (55%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +YVGNL YDV L +F + G V+ ++ +RET + RGFGFV + E A+E Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 198 HRYDVNGRLLTVNKAAPRGAR 260 + GR L VNKA PR R Sbjct: 63 DGAEWMGRDLKVNKAKPRENR 83
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 69.3 bits (168), Expect = 6e-12 Identities = 41/170 (24%), Positives = 89/170 (52%), Gaps = 3/170 (1%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +VYVG++ +++ + + F G ++ + ++ T + +GF FV E A+ A+E Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 195 FHRYDVNGRLLTVNKAA--PRGARVERPPRDSGSSF-RIYVGNLPWQVDDSRLVELFSEH 365 + + GR + V + + P+ +V ++ SF RIYV ++ + + + +F Sbjct: 191 MNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAF 250 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 G ++ ++ +G+GF+ A+++ +D+AIA+++ L G+ LRV Sbjct: 251 GPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRV 300 Score = 39.7 bits (91), Expect = 0.005 Identities = 16/76 (21%), Positives = 40/76 (52%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++YV ++ D+ E + +FE G + ++ +G+GF+ + + ++A+ Sbjct: 228 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287 Query: 195 FHRYDVNGRLLTVNKA 242 + +D+ G+LL V ++ Sbjct: 288 MNLFDLGGQLLRVGRS 303
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 68.6 bits (166), Expect = 1e-11 Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 17/188 (9%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVE-----------------VSEVIYNRETDQ 131 ++E V+VGNLP + ++L F++ G VE ++ + DQ Sbjct: 180 KNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQ 239 Query: 132 SRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVG 311 +V A KA++ G + V+ A+ +R +R ++VG Sbjct: 240 KSINAYVVFKEERAAAKALQRNGAQIAEGFRIRVDLASETASRDKRS---------VFVG 290 Query: 312 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 491 NLP++VD+S L E F + G +V R+V + TG RGFG+V + + + A+ L+ Sbjct: 291 NLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KLNNSE 349 Query: 492 LEGRALRV 515 L GR LRV Sbjct: 350 LMGRKLRV 357
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 68.6 bits (166), Expect = 1e-11 Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 3/174 (1%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R V+ L + L + F G V +I +R + +SRG +V + Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRL 209 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRG---ARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 353 A+ + + + ++ A + A + S R+YVG+L + + + L + Sbjct: 210 AIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGI 269 Query: 354 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 F G++ +++ D +TGRS+G+GF+T + E A+ L+G L GR ++V Sbjct: 270 FEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323 Score = 59.7 bits (143), Expect = 5e-09 Identities = 32/94 (34%), Positives = 56/94 (59%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++YVG+L +++ + L +FE G +E +++ + ET +S+G+GF+T S E A+KA+E Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF 296 + +++ GR + V G ER S SSF Sbjct: 311 LNGFELAGRPMKV------GHVTERTDASSASSF 338
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 68.6 bits (166), Expect = 1e-11 Identities = 29/76 (38%), Positives = 56/76 (73%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 ++++G L ++ ++ L + F+++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 477 LDGQSLEGRALRVNVA 524 ++G+S++GR +RV+ A Sbjct: 66 MNGKSVDGRQIRVDQA 81 Score = 58.2 bits (139), Expect = 1e-08 Identities = 27/78 (34%), Positives = 49/78 (62%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E K+++G L ++ + + L Q F + G + V+ +RET +SRGFGFVT +++A+ A+ Sbjct: 4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAM 63 Query: 189 EMFHRYDVNGRLLTVNKA 242 + V+GR + V++A Sbjct: 64 MAMNGKSVDGRQIRVDQA 81
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 68.2 bits (165), Expect = 1e-11 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 17/188 (9%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVE-----------------VSEVIYNRETDQ 131 ++E V+VGNLP + ++L F++ G VE ++ + DQ Sbjct: 186 KNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQ 245 Query: 132 SRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVG 311 +V A KA++ G + V+ A+ +R +R ++VG Sbjct: 246 KSINAYVVFKDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKRS---------VFVG 296 Query: 312 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 491 NLP++++DS L E F + G +V R+V + TG RGFG+V + + + A+ L+ Sbjct: 297 NLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KLNNSE 355 Query: 492 LEGRALRV 515 L GR LRV Sbjct: 356 LMGRKLRV 363
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 68.2 bits (165), Expect = 1e-11 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 8/174 (4%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++VGNL YD E L + F Q G V +++I +R RG G V + ++ ++A+ + Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAIRQY 195 Query: 198 HRYDVNGRLLTVNKAAPRGAR--VERPPRDSG------SSFRIYVGNLPWQVDDSRLVEL 353 R + V + P + ER D G + + V NLP V+ L ++ Sbjct: 196 DGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDI 255 Query: 354 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 F E G V A V D D G S G G V+ ++L AI +G S+EG L V Sbjct: 256 FKECGNVAHADVELDGD-GVSTGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDV 308 Score = 57.0 bits (136), Expect = 3e-08 Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 25/199 (12%) Frame = +3 Query: 3 RHEAK---VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEE 173 RH K V V NLP V+ + L +F++ G V ++V + + S G G V+ I++ Sbjct: 230 RHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGD-GVSTGSGTVSFYDIKD 288 Query: 174 AEKAVEMFHRYDVNGRLLTVNKAAP-----RGARVERPPRDS--------------GSSF 296 +A+E ++ Y + G +L V G V+ P DS G Sbjct: 289 LHRAIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEARKFTENVVGGGE 348 Query: 297 R---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 467 R IY NLP+ S L +LF GKV +A + YD G G V + ++ D Sbjct: 349 RNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYD-SKGAPTGIAVVEYDNVDDADVC 407 Query: 468 IAALDGQSLEGRALRVNVA 524 I L+ + G L ++ A Sbjct: 408 IERLNNYNYGGCDLDISYA 426
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 67.8 bits (164), Expect = 2e-11 Identities = 33/81 (40%), Positives = 51/81 (62%) Frame = +3 Query: 282 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 461 S +++VG L + D+ L + FS G + + VV DR+T RSRGFGF+T + E Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61 Query: 462 DAIAALDGQSLEGRALRVNVA 524 A+ A++G+SL+GR +RV+ A Sbjct: 62 VAMRAMNGESLDGRQIRVDHA 82 Score = 56.2 bits (134), Expect = 5e-08 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 E K++VG L ++ D + L F G + V+ +RET +SRGFGF+T + E A A+ Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAM 64 Query: 189 EMFHRYDVNGRLLTVNKA--APRGAR 260 + ++GR + V+ A + RG R Sbjct: 65 RAMNGESLDGRQIRVDHAGKSARGTR 90
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 67.8 bits (164), Expect = 2e-11 Identities = 40/163 (24%), Positives = 76/163 (46%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + +Y+ LP + + L +L + G + ++ I ++ T++ +G+GFV + A+KAV Sbjct: 61 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAV 120 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 V ++ + P +Y+ NLP +D+ L + G Sbjct: 121 SALKANGVQAQMAKQQEQDPT---------------NLYISNLPLSMDEQELENMLKPFG 165 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 497 +V+ RV+ D +G SRG GF M S E+ + I +G+ ++ Sbjct: 166 QVISTRVLRD-SSGASRGVGFARMESTEKCEAVIGHFNGKFIK 207 Score = 47.8 bits (112), Expect = 2e-05 Identities = 22/75 (29%), Positives = 38/75 (50%) Frame = +3 Query: 279 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 458 D S +Y+ LP D LV+L +GK+V + + D+ T + +G+GFV S Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAA 116 Query: 459 DDAIAALDGQSLEGR 503 A++AL ++ + Sbjct: 117 QKAVSALKANGVQAQ 131
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 67.0 bits (162), Expect = 3e-11 Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 1/173 (0%) Frame = +3 Query: 9 EAKVYV-GNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 E+K V NL Y E L ++FE+A ++V + + + +G+ F+ ++ E+A++A Sbjct: 484 ESKTLVLSNLSYSATKETLEEVFEKATFIKVPQNPHGKP----KGYAFIEFASFEDAKEA 539 Query: 186 VEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEH 365 + ++ ++ GR + + +G+ P S ++V L + L E F Sbjct: 540 LNSCNKMEIEGRTIRLEL---QGSNSRSQP-----SKTLFVKGLSEDTTEETLKESFEGS 591 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ A Sbjct: 592 ---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 641 Score = 60.1 bits (144), Expect = 4e-09 Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 3/167 (1%) Frame = +3 Query: 30 NLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYD 209 NL +++ + L ++FE A E+ + +S+G ++ + +AEK +E + Sbjct: 400 NLSFNITEDELKEVFEDA-----MEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 454 Query: 210 VNGRLLTVNKAAPRGARVERPPRD---SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVD 380 ++GR +++ +G R ER + SG S + + NL + L E+F + + Sbjct: 455 IDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKATFI-- 512 Query: 381 ARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 V G+ +G+ F+ AS E+ +A+ + + +EGR +R+ + Sbjct: 513 --KVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 557 Score = 47.0 bits (110), Expect = 3e-05 Identities = 27/79 (34%), Positives = 46/79 (58%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V L D E L + FE G V + ++ +RET S+GFGFV ++ E+A+ A E Sbjct: 570 LFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 626 Query: 198 HRYDVNGRLLTVNKAAPRG 254 +++G +T++ A P+G Sbjct: 627 EDGEIDGNKVTLDWAKPKG 645 Score = 41.6 bits (96), Expect = 0.001 Identities = 30/129 (23%), Positives = 61/129 (47%) Frame = +3 Query: 123 TDQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRI 302 T +R FG+V + E+ EKA+E+ V G + + K R ++ R R + Sbjct: 344 TGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGRDSKKVRAAR------TL 396 Query: 303 YVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD 482 NL + + + L E+F + ++ R+V G+S+G ++ S+ + + + Sbjct: 397 LAKNLSFNITEDELKEVFED---AMEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQ 451 Query: 483 GQSLEGRAL 509 G ++GR++ Sbjct: 452 GAEIDGRSV 460
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 67.0 bits (162), Expect = 3e-11 Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 3/174 (1%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R V+ L + L + F G V +I +R + +S+G +V + Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRG---ARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 353 A+ + + + ++ A + A + S R+YVG+L + + + L + Sbjct: 210 AIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGI 269 Query: 354 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 F G++ +++ D +TGRS+G+GF+T + E A+ L+G L GR ++V Sbjct: 270 FEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323 Score = 59.7 bits (143), Expect = 5e-09 Identities = 32/94 (34%), Positives = 56/94 (59%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++YVG+L +++ + L +FE G +E +++ + ET +S+G+GF+T S E A+KA+E Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF 296 + +++ GR + V G ER S SSF Sbjct: 311 LNGFELAGRPMKV------GHVTERTDASSASSF 338
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 66.6 bits (161), Expect = 4e-11 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 1/158 (0%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG++P E + FEQ G V +I ++ T Q +G FV +T ++A++A+ Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180 Query: 195 FH-RYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 H + + G V G R R F+++VG+L Q + + E+F + G Sbjct: 181 LHNQITLPGGTGPVQVRYADGER----ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGH 236 Query: 372 VVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 485 V D ++ D + +SRG GFV +S+E A+AA+DG Sbjct: 237 VEDVYLMRD-EYRQSRGCGFVKYSSKE---TAMAAIDG 270 Score = 49.7 bits (117), Expect = 5e-06 Identities = 22/70 (31%), Positives = 41/70 (58%) Frame = +3 Query: 279 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 458 D S+ +++VG++P + + F +HG V++ ++ D+ TG+ +G FV A+ ++ Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174 Query: 459 DDAIAALDGQ 488 D AI AL Q Sbjct: 175 DRAIRALHNQ 184
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 66.6 bits (161), Expect = 4e-11 Identities = 33/78 (42%), Positives = 50/78 (64%) Frame = +3 Query: 291 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 S ++Y+G L D+ L + FS V +ARV+ ++ TGRSRG+GFV S++ + AI Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89 Query: 471 AALDGQSLEGRALRVNVA 524 +A++GQ L G + VNVA Sbjct: 90 SAMNGQELNGFNISVNVA 107 Score = 46.6 bits (109), Expect = 4e-05 Identities = 24/76 (31%), Positives = 39/76 (51%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+Y+G L D L F V + V+ N+ T +SRG+GFV + + A A+ Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 195 FHRYDVNGRLLTVNKA 242 + ++NG ++VN A Sbjct: 92 MNGQELNGFNISVNVA 107
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 66.6 bits (161), Expect = 4e-11 Identities = 39/163 (23%), Positives = 75/163 (46%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + +Y+ LP + L +L + G + ++ I ++ T++ +G+GFV + A+KAV Sbjct: 61 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 120 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 V ++ + P +Y+ NLP +D+ L + G Sbjct: 121 SALKASGVQAQMAKQQEQDPT---------------NLYISNLPLSMDEQELENMLKPFG 165 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 497 +V+ R++ D +G SRG GF M S E+ + I +G+ ++ Sbjct: 166 QVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIK 207 Score = 48.1 bits (113), Expect = 1e-05 Identities = 22/75 (29%), Positives = 38/75 (50%) Frame = +3 Query: 279 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 458 D S +Y+ LP D LV+L +GK+V + + D+ T + +G+GFV S Sbjct: 57 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAA 116 Query: 459 DDAIAALDGQSLEGR 503 A++AL ++ + Sbjct: 117 QKAVSALKASGVQAQ 131
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 66.2 bits (160), Expect = 5e-11 Identities = 41/172 (23%), Positives = 80/172 (46%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + K++VG L ++ + L F + G +E V + +T +SRGF F+ + E +K V Sbjct: 55 DRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK-V 113 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 + +N + + KA R + I+VG L ++ D + F + G Sbjct: 114 SAADEHIINSKKVDPKKAKARHGK-------------IFVGGLTTEISDEEIKTYFGQFG 160 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V+ + +D+ + +GF F+T S++ + D + Q + G+ + V A Sbjct: 161 NIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT-PKQKIAGKEVDVKRA 211
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 65.9 bits (159), Expect = 7e-11 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 11/175 (6%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQ---SRGFGFVTMSTIEEAEKAV 188 +++ NL + E L +F + G ++ + + S GFGFV E+A+KA+ Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783 Query: 189 EMFHRYDVNGRLLTVN------KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 350 + + V+G L V K A R ++ P+ +S +I V N+P+Q + + E Sbjct: 784 KQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTS-KILVRNIPFQANQREIRE 842 Query: 351 LFSEHGKVVDARVVYD-RDTGRSRGFGFVTMASQEELDDAIAAL-DGQSLEGRAL 509 LFS G++ R+ TG RGFGFV ++++ A AL L GR L Sbjct: 843 LFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 897 Score = 58.9 bits (141), Expect = 8e-09 Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 16/176 (9%) Frame = +3 Query: 36 PYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDVN 215 P++V + + + V + ++ N +++ G+ FV +S+ EE +KA++ Y + Sbjct: 301 PFNVTEKNVIEFLAPLKPVAI-RIVRNAHGNKT-GYVFVDLSSEEEVKKALKCNRDY-MG 357 Query: 216 GRLLTV--NKAAP--RGARVERPP------------RDSGSSFRIYVGNLPWQVDDSRLV 347 GR + V K AP RG P D S R++V NL + + L Sbjct: 358 GRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLE 417 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 +LFS +G + + D T + +GF FVT E A A +DGQ +GR L V Sbjct: 418 KLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 473 Score = 41.6 bits (96), Expect = 0.001 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 15/106 (14%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 +++ V NLP + ER QLF G + + + ++ + R FGF+ + EEA+ A+ Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAALN 60 Query: 192 MFHRYDVNGRLLTV---------------NKAAPRGARVERPPRDS 284 FHR ++ +TV +K A + ++ ++P +DS Sbjct: 61 HFHRSFIDTTRITVEFCKSFGDPSKPRAWSKHAQKSSQPKQPSQDS 106 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 R+ V NLP + + R +LF+ G + D + + +D G+ R FGF+ S+EE A+ Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAAL 59 Score = 36.2 bits (82), Expect = 0.056 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRE-TDQSRGFGFVTMSTIEEAEKAV 188 +K+ V N+P+ + + +LF G ++ + T RGFGFV T ++A+KA Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883 Query: 189 E-MFHRYDVNGRLLTVNKA 242 + H + GR L + A Sbjct: 884 NALCHSTHLYGRRLVLEWA 902 Score = 34.7 bits (78), Expect = 0.16 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++V NL Y E L +LF G + + T + +GF FVT E A KA Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 460 Query: 195 FHRYDVNGRLL-----TVNKAAPRGARVERPPRDSGSSFR 299 GR+L T+ K A + A GSS++ Sbjct: 461 VDGQVFQGRMLHVLPSTIKKEASQEANA------PGSSYK 494
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 65.9 bits (159), Expect = 7e-11 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 6/175 (3%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQ-----AGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 V+V NL + + L+ LF+ V+ N S GFGFV T E+A Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPP-RDSGSSFRIYVGNLPWQVDDSRLVELFS 359 A+ + ++G L + + +G + SG S +I + NLP++ L+ELF Sbjct: 679 AISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEATRKDLLELFG 738 Query: 360 EHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 G++ RV D +RGF FV +E + A++ L+G L GR L + A Sbjct: 739 AFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYA 792 Score = 49.7 bits (117), Expect = 5e-06 Identities = 21/73 (28%), Positives = 41/73 (56%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R+++ N+ ++ + LFS++G + + + D TG+S+GF +V +E+ A + Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 477 LDGQSLEGRALRV 515 LD Q +GR L + Sbjct: 371 LDKQIFQGRLLHI 383 Score = 42.4 bits (98), Expect = 8e-04 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQS-RGFGFVTMSTIEEAEKAV 188 +K+ + NLP++ + L +LF G ++ V ++ DQS RGF FV + ++EAE A+ Sbjct: 717 SKIIIKNLPFEATRKDLLELFGAFG--QLKSVRVPKKFDQSARGFAFVEFNLMKEAETAM 774 Query: 189 EMFHRYDVNGRLLTVNKAA--PRGARVE 266 + GR L + A P A VE Sbjct: 775 SQLEGVHLLGRRLVMQYAEQDPENAEVE 802 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++++ N+ Y+ E LF Q G +E + + T +S+GF +V E+A +A Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 195 FHRYDVNGRLLTV 233 + GRLL + Sbjct: 371 LDKQIFQGRLLHI 383 Score = 37.7 bits (86), Expect = 0.019 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Frame = +3 Query: 285 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRD---TGR--SRGFGFVTMASQ 449 G + ++V NL + L +LF V A V D +G+ S GFGFV ++ Sbjct: 614 GPTVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTK 673 Query: 450 EELDDAIAALDGQSLEGRALRVNVA 524 E+ + AI+ LDG L+G L++ ++ Sbjct: 674 EQANVAISTLDGHVLDGHKLQLKLS 698
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 65.5 bits (158), Expect = 9e-11 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 6/175 (3%) Frame = +3 Query: 18 VYVGNLPYDVDSE--RLAQLFEQAG-VVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 V+V NLPY + +L LFE G VV++ + NR RG+ +V + A +A+ Sbjct: 724 VFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNR--GDFRGYRYVEFKEEKSALQAL 781 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF---RIYVGNLPWQVDDSRLVELFS 359 EM R V GR + V+ + + +S ++++ LP+ L E+ Sbjct: 782 EM-DRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICK 840 Query: 360 EHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 HG V D R+V +R G+ +G +V ++ + A+ +DG +++ ++V ++ Sbjct: 841 AHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENVIKVAIS 894
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 65.1 bits (157), Expect = 1e-10 Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 17/188 (9%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVE-----------------VSEVIYNRETDQ 131 ++E V+VGNLP + ++L F++ G +E ++ + DQ Sbjct: 182 KNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQ 241 Query: 132 SRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVG 311 +V A +A++ +G + V+ A+ +R +R ++VG Sbjct: 242 KNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRS---------VFVG 292 Query: 312 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 491 NLP++V++S + + F + G ++ R+V D+ TG +GFG+V + + + A+ L+ Sbjct: 293 NLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSE 351 Query: 492 LEGRALRV 515 L GR LRV Sbjct: 352 LMGRKLRV 359
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 64.7 bits (156), Expect = 1e-10 Identities = 40/150 (26%), Positives = 72/150 (48%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R E K+++G L +D + L F + G V + + T +SRGFGFV E +K Sbjct: 94 REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSE 362 ++ + +NG+++ +A + + + P + +I+VG L + ++ E F Sbjct: 154 VMDQ-KEHKLNGKVIDPKRA--KAMKTKEPVK------KIFVGGLSPDTPEEKIREYFGG 204 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 G+V + D T + RGF F+T +E Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEE 234 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/76 (34%), Positives = 40/76 (52%) Frame = +3 Query: 234 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 413 + ++PR R+ +++++G L W L + FS+ G+VVD + D TGR Sbjct: 80 SNSSPRHTEAAAAQREE---WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136 Query: 414 SRGFGFVTMASQEELD 461 SRGFGFV E +D Sbjct: 137 SRGFGFVLFKESESVD 152 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/59 (33%), Positives = 33/59 (55%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 K++VG L D E++ + F G VE E+ + +T++ RGF F+T E +K +E Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 64.7 bits (156), Expect = 1e-10 Identities = 40/150 (26%), Positives = 72/150 (48%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R E K+++G L +D + L F + G V + + T +SRGFGFV E +K Sbjct: 94 REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSE 362 ++ + +NG+++ +A + + + P + +I+VG L + ++ E F Sbjct: 154 VMDQ-KEHKLNGKVIDPKRA--KAMKTKEPVK------KIFVGGLSPDTPEEKIREYFGG 204 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 G+V + D T + RGF F+T +E Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEE 234 Score = 52.4 bits (124), Expect = 8e-07 Identities = 26/76 (34%), Positives = 41/76 (53%) Frame = +3 Query: 234 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 413 + ++PR + R+ +++++G L W L + FS+ G+VVD + D TGR Sbjct: 80 SNSSPRHSEAATAQREE---WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136 Query: 414 SRGFGFVTMASQEELD 461 SRGFGFV E +D Sbjct: 137 SRGFGFVLFKESESVD 152 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/59 (33%), Positives = 33/59 (55%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 K++VG L D E++ + F G VE E+ + +T++ RGF F+T E +K +E Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 64.7 bits (156), Expect = 1e-10 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 6/175 (3%) Frame = +3 Query: 18 VYVGNLPYDVDSE--RLAQLFEQAG-VVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 V+V NLPY + +L LFE G VV++ + NR RG+ +V + A +A+ Sbjct: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNR--GDFRGYCYVEFKEEKSALQAL 763 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF---RIYVGNLPWQVDDSRLVELFS 359 EM R V GR + V+ + + +S ++++ LP+ L E+ Sbjct: 764 EM-DRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICK 822 Query: 360 EHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 HG V D R+V +R G+ +G +V ++ + A+ +DG +++ ++V ++ Sbjct: 823 AHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 876
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 64.3 bits (155), Expect = 2e-10 Identities = 40/150 (26%), Positives = 72/150 (48%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R E K+++G L +D + L F + G V + + T +SRGFGFV E +K Sbjct: 92 REEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDK 151 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSE 362 ++ + +NG+++ +A + + + P + +I+VG L + ++ E F Sbjct: 152 VMDQ-KEHKLNGKVIDPKRA--KAMKTKEPVK------KIFVGGLSPDTPEEKIREYFGG 202 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 G+V + D T + RGF F+T +E Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEE 232 Score = 51.2 bits (121), Expect = 2e-06 Identities = 26/76 (34%), Positives = 39/76 (51%) Frame = +3 Query: 234 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 413 + ++PR R+ +++++G L W L + FS+ G VVD + D TGR Sbjct: 78 SNSSPRHTEAATAQREE---WKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGR 134 Query: 414 SRGFGFVTMASQEELD 461 SRGFGFV E +D Sbjct: 135 SRGFGFVLFKESESVD 150 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/59 (33%), Positives = 33/59 (55%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 K++VG L D E++ + F G VE E+ + +T++ RGF F+T E +K +E Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 63.9 bits (154), Expect = 3e-10 Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 41/210 (19%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLF-EQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 + ++ N+P+DV + L L E+ G V E++ + E +SRG V E +KA E Sbjct: 70 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAE 128 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVER------------------------PPRDSGS--- 290 + +++ ++GR L V K P G R PP + Sbjct: 129 VLNKHSLSGRPLKV-KEDPDGEHARRAMQKVMATTGGMGMGPGGPGMINIPPSILNNPNI 187 Query: 291 -------------SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGF 431 ++V NL ++V +L E+FS G VV A ++ D+D G+SRG G Sbjct: 188 PNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGI 246 Query: 432 VTMASQEELDDAIAALDGQSLEGRALRVNV 521 VT E AI+ +GQ L R + V + Sbjct: 247 VTFEQSIEAVQAISMFNGQLLFDRPMHVKM 276 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +I+V NLP+ L + F+E G V+ A + + G+S+G G V S E + A Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 709 Query: 477 LDGQSLEGRALRVNV 521 ++G L GR + V + Sbjct: 710 MNGMKLSGREIDVRI 724 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R +++V NLP+D + L F + G V +++ E +S+G G V + E AE+ Sbjct: 648 RKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAER 705 Query: 183 AVEMFHRYDVNGRLLTV 233 A M + ++GR + V Sbjct: 706 ACRMMNGMKLSGREIDV 722
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 63.9 bits (154), Expect = 3e-10 Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 29/198 (14%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V ++P DV E+LA F ++ + V+ + +SRGFGFV+ + ++ ++A+ Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKA 86 Query: 198 HRYDVNGRLLTVNKAAPRGAR------VERPPRDSGSSF--------------------- 296 + NG +L V+ A R VE+ +S Sbjct: 87 RKTKFNGHILRVDIAKRRDRSKKTSEVVEKSTPESSEKITGQNNEDEDDADGEDSMLKGK 146 Query: 297 -RIYVGNLPWQVDDS-RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 ++ + N+PW D +L ++F +G VV+A + RD G+ GF FVTM A+ Sbjct: 147 PKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRD-GKLCGFAFVTMKKISNCRIAL 205 Query: 471 AALDGQSLEGRALRVNVA 524 ++GR + V+ A Sbjct: 206 ENTKDLKIDGRKVAVDFA 223 Score = 51.2 bits (121), Expect = 2e-06 Identities = 30/99 (30%), Positives = 49/99 (49%) Frame = +3 Query: 228 TVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDT 407 T+ + V + D ++V ++P V D +L + FS + A VV D + Sbjct: 4 TIENVEVPSSNVSKQNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK 63 Query: 408 GRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 RSRGFGFV+ A +++ +A+A G LRV++A Sbjct: 64 -RSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIA 101 Score = 46.6 bits (109), Expect = 4e-05 Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 50/202 (24%) Frame = +3 Query: 15 KVYVGNLPYDV-DSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 K+ + N+P+ D +L ++F + G V V I + + GF FVTM I A+E Sbjct: 148 KLIIRNMPWSCRDPVKLKKIFGRYGTV-VEATIPRKRDGKLCGFAFVTMKKISNCRIALE 206 Query: 192 MFHRYDVNGRLLTVNKA------------------------------------------- 242 ++GR + V+ A Sbjct: 207 NTKDLKIDGRKVAVDFAVQKNRWEDYKKAQPEMNDKDDNESGNEDAEENHDDEEDENEEE 266 Query: 243 ------APRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRD 404 A + +R ++ F ++V N+P+ + L FS+ G V A V D+ Sbjct: 267 DRQVDQASKNKESKRKAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKS 326 Query: 405 TGRSRGFGFVTMASQEELDDAI 470 TG ++G FV Q ++ I Sbjct: 327 TGLAKGTAFVAFKDQYTYNECI 348 Score = 36.6 bits (83), Expect = 0.043 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 15/147 (10%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMS---TIEE 173 R + V+V N+PYD E LA F + G V+ + + ++ T ++G FV T E Sbjct: 287 REDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNE 346 Query: 174 AEKAV------------EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNL 317 K ++ Y GR+L++ R R + + + +G Sbjct: 347 CIKNAPAAGSTSLLIGDDVMPEYVYEGRVLSITPTLVR-EDAGRMAEKNAAKRKEALGKA 405 Query: 318 PWQVDDSRLVELFSEHGKVVDARVVYD 398 P + D L L G+VV+ + D Sbjct: 406 PGEKDRRNLYLL--NEGRVVEGSKMAD 430
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 63.9 bits (154), Expect = 3e-10 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 2/171 (1%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++G L V + Q++ G ++I NR T + G+ FV ++ EA A+ M Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154 Query: 198 HR-YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELF-SEHGK 371 ++ L +N A+ G R + + S + I+VG+L V++ + LF S + Sbjct: 155 NKPIPGTNHLFKLNWASGGGLREKSISK--ASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212 Query: 372 VVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 A+++ D T SRG+GFV + + A+A + GQ R +RV +A Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263 Score = 43.9 bits (102), Expect = 3e-04 Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 24/194 (12%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLF-EQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 E ++VG+L +V+ + LF + + ++++ + +T+ SRG+GFV + + + A Sbjct: 185 EYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSA 244 Query: 186 VEMFHRYDVNGRLLTVNKAAPRG----------ARVERPP-------------RDSGSSF 296 + R + V A P+ V PP D+ +S Sbjct: 245 LAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANS- 303 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 ++VG L V + L LF G++V ++ +G GFV +++ + AI Sbjct: 304 TVFVGGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQFVNRQSAEIAINQ 357 Query: 477 LDGQSLEGRALRVN 518 L G L +R++ Sbjct: 358 LQGYPLGNSRIRLS 371
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 63.5 bits (153), Expect = 3e-10 Identities = 40/163 (24%), Positives = 77/163 (47%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + +Y+ L + L +L + G + ++ I ++ T++ +G+GFV + A+KAV Sbjct: 57 KTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAV 116 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 T KA+ G + + + +Y+ NLP +D+ L + G Sbjct: 117 -------------TALKAS--GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFG 161 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 497 +V+ R++ D +G SRG GF M S E+ + I +G+ ++ Sbjct: 162 QVISTRILRD-TSGASRGVGFARMESTEKCEAIITHFNGKYIK 203 Score = 46.2 bits (108), Expect = 5e-05 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%) Frame = +3 Query: 213 NGRLLTVNKAAPRGARVERPPRDSG-----------SSFRIYVGNLPWQVDDSRLVELFS 359 N +L + AP R P G S +Y+ L D LV+L Sbjct: 20 NKKLYVAQQMAPPSPRNSTPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQ 79 Query: 360 EHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 503 +GK+V + + D+ T + +G+GFV S A+ AL ++ + Sbjct: 80 PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQ 127
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 63.2 bits (152), Expect = 4e-10 Identities = 33/86 (38%), Positives = 48/86 (55%) Frame = +3 Query: 267 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 446 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 447 QEELDDAIAALDGQSLEGRALRVNVA 524 + + +DA+ A+DG L+GR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89 Score = 42.0 bits (97), Expect = 0.001 Identities = 33/92 (35%), Positives = 45/92 (48%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V NL Y + L ++FE+ G V + +R T +SRGF FV +AE A++ Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFR 299 ++GR L V AR RPP DS S R Sbjct: 77 AVLDGRELRVQM-----ARYGRPP-DSHHSRR 102
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 63.2 bits (152), Expect = 4e-10 Identities = 33/86 (38%), Positives = 48/86 (55%) Frame = +3 Query: 267 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 446 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 447 QEELDDAIAALDGQSLEGRALRVNVA 524 + + +DA+ A+DG L+GR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89 Score = 42.0 bits (97), Expect = 0.001 Identities = 33/92 (35%), Positives = 45/92 (48%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V NL Y + L ++FE+ G V + +R T +SRGF FV +AE A++ Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFR 299 ++GR L V AR RPP DS S R Sbjct: 77 AVLDGRELRVQM-----ARYGRPP-DSHHSRR 102
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 63.2 bits (152), Expect = 4e-10 Identities = 33/86 (38%), Positives = 48/86 (55%) Frame = +3 Query: 267 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 446 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 447 QEELDDAIAALDGQSLEGRALRVNVA 524 + + +DA+ A+DG L+GR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89 Score = 42.0 bits (97), Expect = 0.001 Identities = 33/92 (35%), Positives = 45/92 (48%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V NL Y + L ++FE+ G V + +R T +SRGF FV +AE A++ Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFR 299 ++GR L V AR RPP DS S R Sbjct: 77 AVLDGRELRVQM-----ARYGRPP-DSHHSRR 102
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 63.2 bits (152), Expect = 4e-10 Identities = 33/86 (38%), Positives = 48/86 (55%) Frame = +3 Query: 267 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 446 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 447 QEELDDAIAALDGQSLEGRALRVNVA 524 + + +DA+ A+DG L+GR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89 Score = 42.0 bits (97), Expect = 0.001 Identities = 33/92 (35%), Positives = 45/92 (48%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V NL Y + L ++FE+ G V + +R T +SRGF FV +AE A++ Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 204 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFR 299 ++GR L V AR RPP DS S R Sbjct: 77 AVLDGRELRVQM-----ARYGRPP-DSHHSRR 102
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 63.2 bits (152), Expect = 4e-10 Identities = 33/86 (38%), Positives = 48/86 (55%) Frame = +3 Query: 267 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 446 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64 Query: 447 QEELDDAIAALDGQSLEGRALRVNVA 524 + + +DA+ A+DG L+GR LRV +A Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMA 90 Score = 42.4 bits (98), Expect = 8e-04 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Frame = +3 Query: 24 VGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHR 203 V NL Y + L ++FE+ G V + +R T +SRGF FV +AE A++ Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77 Query: 204 YDVNGRLLTVNKAA------PRGARVERPPRDSGSS 293 ++GR L V A +R PPR GSS Sbjct: 78 AVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSS 113
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 63.2 bits (152), Expect = 4e-10 Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 41/210 (19%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLF-EQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 + ++ N+P+DV + L L E+ G V E++ + E +SRG V E +KA E Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAE 129 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVER------------------------PPRDSGS--- 290 + +++ ++GR L V K P G R PP + Sbjct: 130 VLNKHSLSGRPLKV-KEDPDGEHARRAMQKVMATTGGMGMGPGGPGMITIPPSILNNPNI 188 Query: 291 -------------SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGF 431 ++V NL ++V +L E+FS G VV A ++ D+D G+SRG G Sbjct: 189 PNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGT 247 Query: 432 VTMASQEELDDAIAALDGQSLEGRALRVNV 521 VT E AI+ +GQ L R + V + Sbjct: 248 VTFEQSIEAVQAISMFNGQLLFDRPMHVKM 277 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +I+V NLP+ L + F+E G V+ A + + G+S+G G V S E + A Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 710 Query: 477 LDGQSLEGRALRVNV 521 ++G L GR + V + Sbjct: 711 MNGMKLSGREIDVRI 725 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R +++V NLP+D + L F + G V +++ E +S+G G V + E AE+ Sbjct: 649 RKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAER 706 Query: 183 AVEMFHRYDVNGRLLTV 233 A M + ++GR + V Sbjct: 707 ACRMMNGMKLSGREIDV 723
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 63.2 bits (152), Expect = 4e-10 Identities = 40/163 (24%), Positives = 77/163 (47%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + +Y+ L + L +L + G + ++ I ++ T++ +G+GFV + A+KAV Sbjct: 55 KTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 114 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 T KA+ G + + + +Y+ NLP +D+ L + G Sbjct: 115 -------------TALKAS--GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFG 159 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 497 +V+ R++ D +G SRG GF M S E+ + I +G+ ++ Sbjct: 160 QVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHFNGKYIK 201 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = +3 Query: 279 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 458 D S +Y+ L D LV+L +GK+V + + D+ T + +G+GFV S Sbjct: 51 DQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAA 110 Query: 459 DDAIAALDGQSLEGR 503 A+ AL ++ + Sbjct: 111 QKAVTALKASGVQAQ 125
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 63.2 bits (152), Expect = 4e-10 Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 6/175 (3%) Frame = +3 Query: 18 VYVGNLPYDVDSE--RLAQLFEQAG-VVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 V+V NLPY ++ +L LFE G VV++ + NR RG+ +V + A++A+ Sbjct: 706 VFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNR--GDFRGYCYVEFGEEKSAQQAL 763 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF---RIYVGNLPWQVDDSRLVELFS 359 E+ R V GR + V+ + + ++ ++++ LP+ L ++ Sbjct: 764 EL-DRKIVEGRPMFVSPCVDKSKNPDFKVFRYSTTLEKHKLFISGLPFSCTKEELEDICK 822 Query: 360 EHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 HG V D R+V +R G+ +G +V ++ + A+ +DG ++ ++V ++ Sbjct: 823 AHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIRENVIKVAIS 876
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 62.8 bits (151), Expect = 6e-10 Identities = 26/76 (34%), Positives = 52/76 (68%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 ++++G L + ++ L +F ++G++V+ ++ DR+T +SRGF FVT+ S + DA Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 477 LDGQSLEGRALRVNVA 524 ++G+SL+G+A++V A Sbjct: 69 MNGKSLDGKAIKVEQA 84 Score = 43.5 bits (101), Expect = 4e-04 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 4/91 (4%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L + + + L +F + G + ++ +RET++SRGF FVT+ + +A+ A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 195 FHRYDVNGRLLTVNKAA----PRGARVERPP 275 + ++G+ + V +A G R PP Sbjct: 69 MNGKSLDGKAIKVEQATKPFFESGRRGPPPP 99
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 62.8 bits (151), Expect = 6e-10 Identities = 26/76 (34%), Positives = 51/76 (67%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 ++++G L + ++ L +F ++G++V+ ++ DR+T +SRGF FVT S + DA Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 477 LDGQSLEGRALRVNVA 524 ++G+SL+G+A++V A Sbjct: 69 MNGKSLDGKAIKVEQA 84 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L + + + L +F + G + ++ +RET++SRGF FVT + +A+ A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 195 FHRYDVNGRLLTVNKAAPRGARVER-----PPRDSG 287 + ++G+ + V +A R PPR G Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRG 104
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 62.4 bits (150), Expect = 7e-10 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 2/172 (1%) Frame = +3 Query: 15 KVYVGNLP-YDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 K++VGN+ D E LA LF G V V+ + F FV M A +A+E Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVM--------KQFAFVHMRENAGAVRAIE 53 Query: 192 MFHRYDVN-GRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 H +++ GR L V + PR ++++I+VGN+ L LF G Sbjct: 54 ALHGHELRPGRALVVEMSRPRPL----------NTWKIFVGNVSAACTSQELRSLFERRG 103 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V++ VV D + FV M + + AIA L+G+ ++G+ + V ++ Sbjct: 104 RVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 62.4 bits (150), Expect = 7e-10 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 2/172 (1%) Frame = +3 Query: 15 KVYVGNLP-YDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 K++VGN+ D E LA LF G V V+ + F FV M A +A+E Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVM--------KQFAFVHMRENAGAVRAIE 53 Query: 192 MFHRYDVN-GRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 H +++ GR L V + PR ++++I+VGN+ L LF G Sbjct: 54 ALHGHELRPGRALVVEMSRPRPL----------NTWKIFVGNVSAACTSQELRSLFERRG 103 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V++ VV D + FV M + + AIA L+G+ ++G+ + V ++ Sbjct: 104 RVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 62.0 bits (149), Expect = 1e-09 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 2/172 (1%) Frame = +3 Query: 15 KVYVGNLP-YDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 K++VGN+ D E LA LF G V V+ + F FV M A +A+E Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVM--------KQFAFVHMRENAGALRAIE 53 Query: 192 MFHRYDVN-GRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 H +++ GR L V + PR ++++I+VGN+ L LF G Sbjct: 54 ALHGHELRPGRALVVEMSRPRPL----------NTWKIFVGNVSAACTSQELRSLFERRG 103 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V++ VV D + FV M + + AIA L+G+ ++G+ + V ++ Sbjct: 104 RVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 62.0 bits (149), Expect = 1e-09 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 2/172 (1%) Frame = +3 Query: 15 KVYVGNLP-YDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 K++VGN+ D E LA LF G V V+ + F FV M A +A+E Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVM--------KQFAFVHMRENAGALRAIE 53 Query: 192 MFHRYDVN-GRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 H +++ GR L V + PR ++++I+VGN+ L LF G Sbjct: 54 ALHGHELRPGRALVVEMSRPRPL----------NTWKIFVGNVSAACTSQELRSLFERRG 103 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 +V++ VV D + FV M + + AIA L+G+ ++G+ + V ++ Sbjct: 104 RVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 62.0 bits (149), Expect = 1e-09 Identities = 26/57 (45%), Positives = 44/57 (77%) Frame = +3 Query: 354 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 FS +G+V++++++ DR+T RSRGFGFVT +++E + AI ++G+ L+GR + VN A Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEA 63 Score = 58.5 bits (140), Expect = 1e-08 Identities = 31/67 (46%), Positives = 42/67 (62%) Frame = +3 Query: 60 LAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNK 239 L F G V S++I +RET +SRGFGFVT ST E A+E + +++GR +TVN+ Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62 Query: 240 AAPRGAR 260 A RG R Sbjct: 63 AQSRGGR 69
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 61.6 bits (148), Expect = 1e-09 Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 5/174 (2%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQ-----SRGFGFVTMSTIEEAEK 182 V+V NL + S L F+ V++V ++ S GFGFV S+ E AE Sbjct: 607 VFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEI 666 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSE 362 A + + ++G L + K + RG E +I + NLP++ + +LF Sbjct: 667 AQKAMDGHVLDGHKLQL-KISNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQKLFGA 725 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 G + RV + SRGF F S +E + A++AL G L GR L + A Sbjct: 726 FGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYA 778 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/73 (27%), Positives = 38/73 (52%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R+++ NL + + +LFS++G++ + + + TG+ +GF V E A A Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361 Query: 477 LDGQSLEGRALRV 515 DG+ +GR L + Sbjct: 362 QDGKIFQGRLLHI 374 Score = 40.4 bits (93), Expect = 0.003 Identities = 26/83 (31%), Positives = 36/83 (43%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R ++++ NL Y E QLF Q G +E + N +T Q +GF V E A Sbjct: 298 RKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIA 357 Query: 183 AVEMFHRYDVNGRLLTVNKAAPR 251 A E GRLL + P+ Sbjct: 358 AYEAQDGKIFQGRLLHILPGKPK 380 Score = 40.0 bits (92), Expect = 0.004 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%) Frame = +3 Query: 225 LTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRD 404 L+ + G+ ERP S S ++V NL ++ L + F + A+V D Sbjct: 585 LSASDVMDTGSNDERPATASTS---VFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPD 641 Query: 405 TGR-----SRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + S GFGFV +S+E + A A+DG L+G L++ ++ Sbjct: 642 SKNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKIS 686 Score = 36.6 bits (83), Expect = 0.043 Identities = 22/86 (25%), Positives = 41/86 (47%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 ++K+ + NLP++ + + +LF G ++ V + +SRGF F + +EAE A+ Sbjct: 702 DSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAM 760 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVE 266 + GR L + A + E Sbjct: 761 SALQGTHLLGRRLVLQYAQADASNAE 786
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 61.6 bits (148), Expect = 1e-09 Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 7/173 (4%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSR-------GFGFVTMSTIE 170 A +YV NL + ERL F G+ + + + D R G+GFV +I+ Sbjct: 621 ATLYVKNLSFSTTDERLTAFFH--GLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSID 678 Query: 171 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 350 A A + ++ L V A R A SG S +I + NLP++ + + Sbjct: 679 AARTAQKAMDGKVLDAHTLVVTFAR-RNAEASTTSISSGGSTKILIKNLPFEATKRDIRD 737 Query: 351 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 LFS G++ R+ D +RGFGFV ++ E A+ AL L GR L Sbjct: 738 LFSSQGQLKSVRLPKKFD-NTTRGFGFVEYSTVREAQSAMEALKHTHLLGRHL 789 Score = 43.5 bits (101), Expect = 4e-04 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = +3 Query: 291 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 S R+++ NLP+ ++ F G V + D+ T S+G FV+ + A Sbjct: 313 SGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAY 372 Query: 471 AALDGQSLEGRALRV 515 A DG + +GR L + Sbjct: 373 RAKDGSTFQGRLLHL 387 Score = 42.4 bits (98), Expect = 8e-04 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+ + NLP++ + LF G ++ S + + + +RGFGFV ST+ EA+ A+E Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLK-SVRLPKKFDNTTRGFGFVEYSTVREAQSAMEA 778 Query: 195 FHRYDVNGRLLTV 233 + GR L + Sbjct: 779 LKHTHLLGRHLVL 791 Score = 42.4 bits (98), Expect = 8e-04 Identities = 25/76 (32%), Positives = 41/76 (53%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R+ V LP + D+RL E FS+ G V D +++ R G SR FGFV S++E A+ Sbjct: 3 RLIVRGLPSYLTDARLREHFSQKGAVTDVKLM-RRPDGTSRKFGFVGYRSEQEAQQALDY 61 Query: 477 LDGQSLEGRALRVNVA 524 + ++ + + +A Sbjct: 62 FNRTFIDTSRISIELA 77 Score = 41.2 bits (95), Expect = 0.002 Identities = 52/211 (24%), Positives = 74/211 (35%), Gaps = 37/211 (17%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R + + V N+PY +E + +LF + G EV +V+ S V M + EA Sbjct: 498 RSDTTILVKNIPYGTSAEEVEKLFGEHG--EVDKVLI----PPSGTIAVVEMPVVNEARL 551 Query: 183 AVEMFHRYDVNGRLLTVNKAAPR-------GARVERPPRDSGSSF--------------- 296 A G +L + KA G +V + G S Sbjct: 552 AFRAIAYKRFKGGILYLEKAPVGLLTQHKVGEKVVKQAPIVGKSIDSSNPSVDLDGPAGA 611 Query: 297 ----------RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGF 431 +YV NL + D RL F AR+ D R S G+GF Sbjct: 612 GAGDEAVDGATLYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGF 671 Query: 432 VTMASQEELDDAIAALDGQSLEGRALRVNVA 524 V S + A A+DG+ L+ L V A Sbjct: 672 VGFKSIDAARTAQKAMDGKVLDAHTLVVTFA 702 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/84 (26%), Positives = 38/84 (45%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++++ NLP+ + + FE G V+ + +++T S+G FV+ S A A Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374 Query: 195 FHRYDVNGRLLTVNKAAPRGARVE 266 GRLL + A + A E Sbjct: 375 KDGSTFQGRLLHLLPAVNKDALAE 398 Score = 35.8 bits (81), Expect = 0.073 Identities = 23/81 (28%), Positives = 43/81 (53%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 +++ V LP + RL + F Q G V +++ R SR FGFV + +EA++A++ Sbjct: 2 SRLIVRGLPSYLTDARLREHFSQKGAVTDVKLM-RRPDGTSRKFGFVGYRSEQEAQQALD 60 Query: 192 MFHRYDVNGRLLTVNKAAPRG 254 F+R ++ +++ A G Sbjct: 61 YFNRTFIDTSRISIELAKKIG 81
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 60.8 bits (146), Expect = 2e-09 Identities = 25/76 (32%), Positives = 50/76 (65%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 ++++G L + ++ L +F ++G++V+ ++ DR+T +SRGF FVT S + D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 477 LDGQSLEGRALRVNVA 524 ++G+SL+G+A++V A Sbjct: 69 MNGKSLDGKAIKVEQA 84 Score = 42.4 bits (98), Expect = 8e-04 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G L + + + L +F + G + ++ +RET++SRGF FVT + +A+ Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 195 FHRYDVNGRLLTVNKAAPRGARVER-----PPRDSG 287 + ++G+ + V +A R PPR G Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRG 104
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 60.5 bits (145), Expect = 3e-09 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Frame = +3 Query: 210 VNGRLLTVNKAAPRGARVERPPRDSGSSF----RIYVGNLPWQVDDSRLVELFSEHGKVV 377 V+G + AAP + + P ++ S R++V N+P++ D L ++F + GK++ Sbjct: 84 VSGTATQTDDAAPTDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL 143 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 D ++++ S+GFGFVT + + D A L G +EGR + VN A Sbjct: 144 DVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 190 Score = 52.8 bits (125), Expect = 6e-07 Identities = 29/79 (36%), Positives = 43/79 (54%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++V N+P+ L Q+F Q G + E+I+N S+GFGFVT +A++A E Sbjct: 117 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 174 Query: 195 FHRYDVNGRLLTVNKAAPR 251 H V GR + VN A R Sbjct: 175 LHGTVVEGRKIEVNNATAR 193
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 60.1 bits (144), Expect = 4e-09 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 21/195 (10%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQ----AGVVEVS-EVIYNRETDQSRGFGFVTMSTI 167 R ++YVGN+P+ V E + + F Q G+ + + + + + + F F+ +I Sbjct: 90 RQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSI 149 Query: 168 EEAEKAVEMFHRYDVNGRLLTVNKA---APRGARVERPPR-----DSG--------SSFR 299 +E +A+ F ++ G+ L + + P + P SG S + Sbjct: 150 DETTQAMA-FDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGVISTVVPDSPHK 208 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 I++G LP ++D ++ EL GK+ +V D TG S+G+ F D +IA L Sbjct: 209 IFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGL 268 Query: 480 DGQSLEGRALRVNVA 524 +G L + L V A Sbjct: 269 NGMQLGDKKLIVQRA 283 Score = 30.4 bits (67), Expect = 3.1 Identities = 13/77 (16%), Positives = 38/77 (49%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G LP ++ +++ +L G + ++ + T S+G+ F + ++++ Sbjct: 208 KIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAG 267 Query: 195 FHRYDVNGRLLTVNKAA 245 + + + L V +A+ Sbjct: 268 LNGMQLGDKKLIVQRAS 284
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 59.7 bits (143), Expect = 5e-09 Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 12/138 (8%) Frame = +3 Query: 132 SRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS------- 290 S G+GFV T E A KA++ ++++G+ L V K A RGA +R + G Sbjct: 580 SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEV-KFAQRGAEDDRETKKGGDAEGGKTK 638 Query: 291 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARV---VYDRDTG--RSRGFGFVTMASQEE 455 S ++ V NLP++ + ELFS +G++ R+ TG +RGF F+ + E Sbjct: 639 STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTE 698 Query: 456 LDDAIAALDGQSLEGRAL 509 A+ AL L GR L Sbjct: 699 AARAMEALKHTHLLGRHL 716 Score = 37.4 bits (85), Expect = 0.025 Identities = 22/76 (28%), Positives = 36/76 (47%) Frame = +3 Query: 288 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 467 S+ R++V NL + L FS +G++ + + + TG G F+ + E+ A Sbjct: 219 STSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAA 278 Query: 468 IAALDGQSLEGRALRV 515 ALD +GR L V Sbjct: 279 YKALDKTIFQGRLLHV 294 Score = 33.9 bits (76), Expect = 0.28 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEV-----SEVIYNRETDQSRGFGFVTMSTIEEAE 179 KV V NLP++ + + +LF G ++ V + +RGF F+ +T EA Sbjct: 641 KVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTEAA 700 Query: 180 KAVEMFHRYDVNGRLLTVNKA 242 +A+E + GR L + A Sbjct: 701 RAMEALKHTHLLGRHLVLQWA 721 Score = 33.1 bits (74), Expect = 0.47 Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 29/203 (14%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVE---------VSEVIYNRETDQSRGFGFVT 155 R + + V N+PY + L LF G + + V + D R F + Sbjct: 414 RSQTTILVKNIPYGTSIQSLTDLFAPHGKLTRVLLPPAGTLGVVEFENHMDAGRAFKALA 473 Query: 156 MSTIEEA----EKA-VEMFHRYDVNG--RLLTVNKAAPRGARV--------ERPPRDSGS 290 + A EK V MF G + T K + E+P + Sbjct: 474 YRRLGNAVLYLEKGPVGMFKSETAPGVGPISTEQKREEEAKALAEKVESLPEQPDPTDEA 533 Query: 291 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQEE 455 +++ L + L + S ARV D R S G+GFV ++E Sbjct: 534 GSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKTKEA 593 Query: 456 LDDAIAALDGQSLEGRALRVNVA 524 A+ AL+G ++G++L V A Sbjct: 594 ATKALKALEGFEIDGKSLEVKFA 616
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 59.3 bits (142), Expect = 6e-09 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Frame = +3 Query: 210 VNGRLLTVNKAAPRGARVERPPRDSGSSF----RIYVGNLPWQVDDSRLVELFSEHGKVV 377 V+G + AAP + + P ++ + R++V N+P++ D L ++F + GK++ Sbjct: 85 VSGTATQADDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL 144 Query: 378 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 D ++++ S+GFGFVT + + D A L G +EGR + VN A Sbjct: 145 DVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 191 Score = 52.8 bits (125), Expect = 6e-07 Identities = 29/79 (36%), Positives = 43/79 (54%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++V N+P+ L Q+F Q G + E+I+N S+GFGFVT +A++A E Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 175 Query: 195 FHRYDVNGRLLTVNKAAPR 251 H V GR + VN A R Sbjct: 176 LHGTVVEGRKIEVNNATAR 194
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 58.9 bits (141), Expect = 8e-09 Identities = 31/76 (40%), Positives = 45/76 (59%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +I+VG LP+ D+ L + F G + +A V+ DR TG+SRG+GFVTMA + D A Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 477 LDGQSLEGRALRVNVA 524 ++GR VN+A Sbjct: 93 -PNPIIDGRKANVNLA 107 Score = 53.5 bits (127), Expect = 3e-07 Identities = 37/101 (36%), Positives = 56/101 (55%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG LPY L + FE G +E + VI +R+T +SRG+GFVTM+ A++A + Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNL 317 + ++GR VN A GA+ PR + F + V L Sbjct: 93 PNPI-IDGRKANVN-LAYLGAK----PRSLQTGFAVGVQQL 127
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 58.5 bits (140), Expect = 1e-08 Identities = 45/165 (27%), Positives = 75/165 (45%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+ V NLP D S+ + +L + + + Y D+++ FVT+ E+A+ A++ Sbjct: 59 KILVKNLPQDSSSQEVHELLQDYEL----KYCY---VDRNKRTAFVTLLNGEQAQSAIQR 111 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 FH++ GR LT V+ P D+ + + NLP EL +G + Sbjct: 112 FHQFSFRGRELT----------VQLQPTDA----LLCITNLPISFTLEEFEELVRAYGNI 157 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 +VY TG S+G+GFV ++ A L G+ + AL Sbjct: 158 ERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQMGASAL 202 Score = 47.0 bits (110), Expect = 3e-05 Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 1/171 (0%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A + + NLP E +L G +E ++Y+ T S+G+GFV + A KA Sbjct: 130 DALLCITNLPISFTLEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKA- 188 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS-RLVELFSEH 365 R ++ GR + + + V + S + + LP DS L++LFS Sbjct: 189 ----RLELLGRQMGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYSDSEELLQLFSGI 244 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 K V ++ D + GF V ++ E ++ DG +++G ++++ Sbjct: 245 HKPVFCQLAQD-EGSHGGGFAVVEYSTAEHAEEVQQVADGITIKGSQVQLS 294
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 58.5 bits (140), Expect = 1e-08 Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Frame = +3 Query: 282 SGSSFRIYVGNLPWQVDDSRLVELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 458 SG++ I+VG+L V +S+L ELF + + A++V+D+ TG S+G+GFV + +E Sbjct: 159 SGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQ 218 Query: 459 DDAIAALDGQSLEGRALRV 515 A++ + G L GRA++V Sbjct: 219 QLALSEMQGVFLNGRAIKV 237 Score = 38.1 bits (87), Expect = 0.015 Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = +3 Query: 6 HEAKVYVGNLPYDVDSERLAQLF-EQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 + ++VG+L +V +L +LF + +++++++ T S+G+GFV + +E + Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220 Query: 183 AVEMFHRYDVNGRLLTV 233 A+ +NGR + V Sbjct: 221 ALSEMQGVFLNGRAIKV 237
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 58.5 bits (140), Expect = 1e-08 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 5/169 (2%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQ-----SRGFGFVTMSTIEEAEK 182 +++ NL + S++L F+ V++V + Q S GFGFV T E+A Sbjct: 642 IFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQATA 701 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSE 362 + ++G + + K + R + + +I V NLP++ + ELF+ Sbjct: 702 VISAMDGTVIDGHKIQL-KLSHRQGNAGSQEKKKAKNGKIIVKNLPFEATRKDVFELFNS 760 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 G++ RV D +RGF FV +E ++A+ L G L GR L Sbjct: 761 FGQLKSVRVPKKFDKS-ARGFAFVEFVLPKEAENAMDQLQGVHLLGRRL 808 Score = 49.7 bits (117), Expect = 5e-06 Identities = 25/76 (32%), Positives = 40/76 (52%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R+++ N+ + + +LFS +G++ + V D TG S+GF +V A EE A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 477 LDGQSLEGRALRVNVA 524 LD Q +GR L + A Sbjct: 386 LDKQIFQGRLLHILAA 401 Score = 39.7 bits (91), Expect = 0.005 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQS-RGFGFVTMSTIEEAEKAVE 191 K+ V NLP++ + + +LF G ++ V ++ D+S RGF FV +EAE A++ Sbjct: 739 KIIVKNLPFEATRKDVFELFNSFG--QLKSVRVPKKFDKSARGFAFVEFVLPKEAENAMD 796 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVE 266 + GR L + A A E Sbjct: 797 QLQGVHLLGRRLVMQPAEQEAANAE 821 Score = 37.7 bits (86), Expect = 0.019 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 5/85 (5%) Frame = +3 Query: 285 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQ 449 G + I++ NL ++ +L + F V A+V D + S GFGFV ++ Sbjct: 637 GPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTK 696 Query: 450 EELDDAIAALDGQSLEGRALRVNVA 524 E+ I+A+DG ++G +++ ++ Sbjct: 697 EQATAVISAMDGTVIDGHKIQLKLS 721 Score = 34.3 bits (77), Expect = 0.21 Identities = 19/73 (26%), Positives = 35/73 (47%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++++ N+ Y + +LF G ++ V + T S+GF +V + EEA +A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 195 FHRYDVNGRLLTV 233 + GRLL + Sbjct: 386 LDKQIFQGRLLHI 398 Score = 32.7 bits (73), Expect = 0.62 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 11/87 (12%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEH-----------GKVVDARVVYDRDTGRSRGFGFVTMA 443 R+ V LP + + L + F++ G + D R++ +R+ G+SR F F+ Sbjct: 3 RVIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNRE-GKSRRFAFIGYK 61 Query: 444 SQEELDDAIAALDGQSLEGRALRVNVA 524 ++++ DA+ DG + + V++A Sbjct: 62 NEQDALDAVNYFDGSFIYTSKIEVDMA 88
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 58.5 bits (140), Expect = 1e-08 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 10/174 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQ-----SRGFGFVTMSTIEEAEK 182 +++ NL + S++L + F+ V++V + Q S GFGF T E+A Sbjct: 653 IFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANA 712 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRG-----ARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 347 + ++G L + + +G A ++ ++ G +I V NLP++ + Sbjct: 713 VISAMEGTILDGHKLQLKLSHRQGTSTTNASSKKKKKNQG---KIIVKNLPFEATRKDVF 769 Query: 348 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 ELFS G++ RV D +RGF FV +E ++A+ L G L GR L Sbjct: 770 ELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQLQGVHLLGRRL 822 Score = 45.4 bits (106), Expect = 9e-05 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R+++ N+ + + +LFS +G++ + + D TG+S+GF +V + + A Sbjct: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390 Query: 477 LDGQSLEGRALRV 515 LD Q +GR L + Sbjct: 391 LDKQIFQGRLLHI 403 Score = 40.4 bits (93), Expect = 0.003 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 1/127 (0%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQS-RGFGFVTMSTIEEAE 179 +++ K+ V NLP++ + + +LF G ++ V ++ D+S RGF FV +EAE Sbjct: 749 KNQGKIIVKNLPFEATRKDVFELFSSFG--QLKSVRVPKKFDKSARGFAFVEFLLPKEAE 806 Query: 180 KAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFS 359 A++ + GR L + VE+ P D + QV+ +++ + + Sbjct: 807 NAMDQLQGVHLLGRRLVME-------FVEQDPEDVEQQIEKMTRKVKKQVNTTKIANMRN 859 Query: 360 EHGKVVD 380 + +D Sbjct: 860 SGKRKID 866 Score = 38.5 bits (88), Expect = 0.011 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%) Frame = +3 Query: 282 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMAS 446 +G + I++ NL + +L E F V A+V D + S GFGF + Sbjct: 647 AGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKT 706 Query: 447 QEELDDAIAALDGQSLEGRALRVNVA 524 +E+ + I+A++G L+G L++ ++ Sbjct: 707 KEQANAVISAMEGTILDGHKLQLKLS 732 Score = 37.0 bits (84), Expect = 0.033 Identities = 19/77 (24%), Positives = 34/77 (44%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R ++++ N+ Y + +LF G +E + + T QS+GF +V + A Sbjct: 327 RETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAAT 386 Query: 183 AVEMFHRYDVNGRLLTV 233 A + GRLL + Sbjct: 387 AFVELDKQIFQGRLLHI 403
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 58.2 bits (139), Expect = 1e-08 Identities = 46/146 (31%), Positives = 69/146 (47%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 ++++VGNLP D+ E + +LFE+ G + EV +++ +GFGF+ + T AE A Sbjct: 79 SRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD----KGFGFIRLETRTLAEIAKV 132 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 + G+ L V A S + V NLP V + L E FS G+ Sbjct: 133 ELDNMPLRGKQLRVRFAC--------------HSASLTVRNLPQYVSNELLEEAFSVFGQ 178 Query: 372 VVDARVVYDRDTGRSRGFGFVTMASQ 449 V A V+ D D GR G G V + + Sbjct: 179 VERAVVIVD-DRGRPSGKGIVEFSGK 203 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R++VGNLP + + + +LF ++GK + + D +GFGF+ + ++ + A Sbjct: 80 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVE 133 Query: 477 LDGQSLEGRALRVNVA 524 LD L G+ LRV A Sbjct: 134 LDNMPLRGKQLRVRFA 149 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = +3 Query: 6 HEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 H A + V NLP V +E L + F G VE + VI + + + G G V S A KA Sbjct: 151 HSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD-DRGRPSGKGIVEFSGKPAARKA 209 Query: 186 VE 191 ++ Sbjct: 210 LD 211
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 58.2 bits (139), Expect = 1e-08 Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 9/178 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIY-----NRETDQSRGFGFVTMSTIEEAEK 182 ++V NL + S +LA+ F+ V++V N + S GFGF+ T E+A Sbjct: 614 IFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGA 673 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS----SFRIYVGNLPWQVDDSRLVE 350 + ++G + + + + + P GS S +I V NLP++ + E Sbjct: 674 VIAAMDGAVIDGHKIQLKISHKQSSL---PKTSKGSKKKISGKIIVKNLPFEATRKDVFE 730 Query: 351 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 LFS G++ RV D +RGF FV E ++A+ L G L GR L + A Sbjct: 731 LFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYA 787 Score = 47.8 bits (112), Expect = 2e-05 Identities = 22/73 (30%), Positives = 39/73 (53%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R+++ N+ + + +LFS +G++ + V D TG+S+GF +V E +A Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 477 LDGQSLEGRALRV 515 LD Q +GR L + Sbjct: 362 LDKQIFQGRLLHI 374 Score = 46.6 bits (109), Expect = 4e-05 Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 36/210 (17%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVE--------VSEVIYNRETDQSRGFGFVTM 158 R + + V N P+ E LA+LF G +E +I R+ +RG F + Sbjct: 485 RDDRIILVKNFPHGTTREELAELFLPFGKIERMLMPPSGTIAIIQYRDVPAARG-AFTKL 543 Query: 159 S------TIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-VERPPRD------------ 281 S I EK + + G L AAP + +++ D Sbjct: 544 SYKRFKAPILYLEKGPKDCFSREPRGDELLEGDAAPEDVKEIKKSVEDVMDADSKTPSSE 603 Query: 282 ----SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVY-----DRDTGRSRGFGFV 434 G + I+V NL + ++L E F V A+V + D S GFGF+ Sbjct: 604 ATAIDGPTVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFI 663 Query: 435 TMASQEELDDAIAALDGQSLEGRALRVNVA 524 ++E+ IAA+DG ++G +++ ++ Sbjct: 664 EFRTKEQAGAVIAAMDGAVIDGHKIQLKIS 693 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/77 (31%), Positives = 35/77 (45%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R ++++ N+ YD E QLF G +E V + T QS+GF +V E A Sbjct: 298 RATGRLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAAN 357 Query: 183 AVEMFHRYDVNGRLLTV 233 A + GRLL + Sbjct: 358 AYIELDKQIFQGRLLHI 374 Score = 37.4 bits (85), Expect = 0.025 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQS-RGFGFVTMSTIEEAEKAVE 191 K+ V NLP++ + + +LF G ++ V ++ D+S RGF FV EAE A++ Sbjct: 713 KIIVKNLPFEATRKDVFELFSSFG--QLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMD 770 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVE 266 + GR L + A VE Sbjct: 771 QLQGVHLLGRRLVMQYAEQESDDVE 795 Score = 34.7 bits (78), Expect = 0.16 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELF---------SEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 449 R+ V LP ++++RL F ++ D ++V D+ +G SR F F+ S+ Sbjct: 3 RVIVKGLPIYLEEARLRAHFLKRLQQQGRGSEDQITDVKIVKDK-SGNSRRFAFIGYRSE 61 Query: 450 EELDDAIAALDGQSLEGRALRVNVA 524 ++ DAI +G ++ + V +A Sbjct: 62 QDAFDAIEYFNGSFIDTARIEVAMA 86
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 58.2 bits (139), Expect = 1e-08 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Frame = +3 Query: 213 NGRLLTVNKAAPRGARVERPPRDSGSSF----RIYVGNLPWQVDDSRLVELFSEHGKVVD 380 NG L T A G + + ++ S R++V N+P++ D L ++F + GK++D Sbjct: 90 NGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILD 149 Query: 381 ARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 ++++ S+GFGFVT + + D A L G +EGR + VN A Sbjct: 150 VEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 195 Score = 52.8 bits (125), Expect = 6e-07 Identities = 29/79 (36%), Positives = 43/79 (54%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++V N+P+ L Q+F Q G + E+I+N S+GFGFVT +A++A E Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 179 Query: 195 FHRYDVNGRLLTVNKAAPR 251 H V GR + VN A R Sbjct: 180 LHGTVVEGRKIEVNNATAR 198
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 58.2 bits (139), Expect = 1e-08 Identities = 46/146 (31%), Positives = 69/146 (47%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 ++++VGNLP D+ E + +LFE+ G + EV +++ +GFGF+ + T AE A Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD----KGFGFIRLETRTLAEIAKV 127 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 + G+ L V A S + V NLP V + L E FS G+ Sbjct: 128 ELDNMPLRGKQLRVRFAC--------------HSASLTVRNLPQYVSNELLEEAFSVFGQ 173 Query: 372 VVDARVVYDRDTGRSRGFGFVTMASQ 449 V A V+ D D GR G G V + + Sbjct: 174 VERAVVIVD-DRGRPSGKGIVEFSGK 198 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R++VGNLP + + + +LF ++GK + + D +GFGF+ + ++ + A Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVE 128 Query: 477 LDGQSLEGRALRVNVA 524 LD L G+ LRV A Sbjct: 129 LDNMPLRGKQLRVRFA 144 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = +3 Query: 6 HEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 H A + V NLP V +E L + F G VE + VI + + + G G V S A KA Sbjct: 146 HSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD-DRGRPSGKGIVEFSGKPAARKA 204 Query: 186 VE 191 ++ Sbjct: 205 LD 206
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 58.2 bits (139), Expect = 1e-08 Identities = 46/146 (31%), Positives = 69/146 (47%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 ++++VGNLP D+ E + +LFE+ G + EV +++ +GFGF+ + T AE A Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD----KGFGFIRLETRTLAEIAKV 127 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 + G+ L V A S + V NLP V + L E FS G+ Sbjct: 128 ELDNMPLRGKQLRVRFAC--------------HSASLTVRNLPQYVSNELLEEAFSVFGQ 173 Query: 372 VVDARVVYDRDTGRSRGFGFVTMASQ 449 V A V+ D D GR G G V + + Sbjct: 174 VERAVVIVD-DRGRPSGKGIVEFSGK 198 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R++VGNLP + + + +LF ++GK + + D +GFGF+ + ++ + A Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVE 128 Query: 477 LDGQSLEGRALRVNVA 524 LD L G+ LRV A Sbjct: 129 LDNMPLRGKQLRVRFA 144 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = +3 Query: 6 HEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 H A + V NLP V +E L + F G VE + VI + + + G G V S A KA Sbjct: 146 HSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD-DRGRPSGKGIVEFSGKPAARKA 204 Query: 186 VE 191 ++ Sbjct: 205 LD 206
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 58.2 bits (139), Expect = 1e-08 Identities = 46/146 (31%), Positives = 69/146 (47%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 ++++VGNLP D+ E + +LFE+ G + EV +++ +GFGF+ + T AE A Sbjct: 76 SRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD----KGFGFIRLETRTLAEIAKV 129 Query: 192 MFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 + G+ L V A S + V NLP V + L E FS G+ Sbjct: 130 ELDNMPLRGKQLRVRFAC--------------HSASLTVRNLPQYVSNELLEEAFSVFGQ 175 Query: 372 VVDARVVYDRDTGRSRGFGFVTMASQ 449 V A V+ D D GR G G V + + Sbjct: 176 VERAVVIVD-DRGRPSGKGIVEFSGK 200 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R++VGNLP + + + +LF ++GK + + D +GFGF+ + ++ + A Sbjct: 77 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVE 130 Query: 477 LDGQSLEGRALRVNVA 524 LD L G+ LRV A Sbjct: 131 LDNMPLRGKQLRVRFA 146 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = +3 Query: 6 HEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 H A + V NLP V +E L + F G VE + VI + + + G G V S A KA Sbjct: 148 HSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD-DRGRPSGKGIVEFSGKPAARKA 206 Query: 186 VE 191 ++ Sbjct: 207 LD 208
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 57.8 bits (138), Expect = 2e-08 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 12/183 (6%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQ-----AGVVEVSEVIYNRETDQSRGFGFVTMSTIEEA 176 A +++ NL + ++ L + F + ++ N S GFGF T +A Sbjct: 592 ATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQA 651 Query: 177 EKAVEMFHRYDVNGRLLTVNKAAPRG--ARVERPPRDSGSSF-----RIYVGNLPWQVDD 335 + A+ + + Y ++ L V +A+ +G A ER D+ +I + NLP+Q Sbjct: 652 QAALAVMNGYTLDRHTLVV-RASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATK 710 Query: 336 SRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 + LF +G++ RV D +RGFGF S E ++A+ AL L GR L + Sbjct: 711 KDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDALKNTHLLGRRLVL 769 Query: 516 NVA 524 A Sbjct: 770 EFA 772 Score = 53.9 bits (128), Expect = 3e-07 Identities = 29/91 (31%), Positives = 47/91 (51%) Frame = +3 Query: 243 APRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRG 422 AP A V+ + S R++V NL ++ +S L +FS GK+ + V +D S+G Sbjct: 278 APTAAEVDTNIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKG 337 Query: 423 FGFVTMASQEELDDAIAALDGQSLEGRALRV 515 F +V A + +A LDG+ +GR L + Sbjct: 338 FAYVQYADPDAAVEAYRNLDGKIFQGRLLHI 368 Score = 37.7 bits (86), Expect = 0.019 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R A+++V NL Y+ L +F G +E V ++ S+GF +V + + + Sbjct: 292 RISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYA---DPDA 348 Query: 183 AVEMFHRYD---VNGRLLTVNKAAPR 251 AVE + D GRLL + A+ + Sbjct: 349 AVEAYRNLDGKIFQGRLLHILPASQK 374
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 57.8 bits (138), Expect = 2e-08 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 1/147 (0%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG L +D + L F + G V + + T +SRGFGF+ EK ++ Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135 Query: 195 -FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 HR D GR++ KA A + P + +I+VG L + + ++ E F + G+ Sbjct: 136 KEHRLD--GRVIDPKKAM---AMKKDPVK------KIFVGGLNPEATEEKIREYFGQFGE 184 Query: 372 VVDARVVYDRDTGRSRGFGFVTMASQE 452 + + D + RGF F+T ++ Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEED 211 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFV----TMASQEELDD 464 +++VG L W L + F++ G+VVD + D +TGRSRGFGF+ + + ++ LD Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135 Query: 465 AIAALDGQSLE 497 LDG+ ++ Sbjct: 136 KEHRLDGRVID 146 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE- 191 K++VG L + E++ + F Q G +E E+ + + ++ RGF F+T + +K +E Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219 Query: 192 MFHRYDVNGRLLTVNKAAPR 251 FH V+G + A P+ Sbjct: 220 KFH--TVSGSKCEIKVAQPK 237
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 57.8 bits (138), Expect = 2e-08 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 2/148 (1%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG L +D + L F + G V + + T +SRGFGF+ EK ++ Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128 Query: 195 -FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNL-PWQVDDSRLVELFSEHG 368 HR D GR++ KA A + P + +I+VG L P + ++ E F E G Sbjct: 129 KEHRLD--GRVIDPKKAM---AMKKDPVK------KIFVGGLNPESPTEEKIREYFGEFG 177 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQE 452 ++ + D + RGF F+T +E Sbjct: 178 EIEAIELPMDPKLNKRRGFVFITFKEEE 205 Score = 52.0 bits (123), Expect = 1e-06 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 5/92 (5%) Frame = +3 Query: 237 KAAPRGA-RVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 413 + APR + D+G +++VG L W L + F++ G+VVD + D +TGR Sbjct: 51 RTAPRDQINASKNEEDAG---KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR 107 Query: 414 SRGFGFVTM---ASQEE-LDDAIAALDGQSLE 497 SRGFGF+ AS E+ LD LDG+ ++ Sbjct: 108 SRGFGFILFKDAASVEKVLDQKEHRLDGRVID 139 Score = 37.7 bits (86), Expect = 0.019 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Frame = +3 Query: 15 KVYVGNL-PYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 K++VG L P E++ + F + G +E E+ + + ++ RGF F+T E +K +E Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212 Query: 192 -MFHRYDVNGRLLTVNKAAPR 251 FH V+G + A P+ Sbjct: 213 KKFH--TVSGSKCEIKVAQPK 231
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 57.8 bits (138), Expect = 2e-08 Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 17/191 (8%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQ----AGVVEV-SEVIYNRETDQSRGFGFVTMSTI 167 R ++YVGN+P+ + E + F G+ + + + +Q + F F+ ++ Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205 Query: 168 EEAEKAVEMFHRYDVNGRLLTVNKA---APRGARVERPPRD---------SGSSFRIYVG 311 +E +A+ F G+ L + + P E P S+ ++++G Sbjct: 206 DETTQAMA-FDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIG 264 Query: 312 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 491 LP ++D ++ EL + G + +V D TG S+G+ F D AIA L+G Sbjct: 265 GLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 324 Query: 492 LEGRALRVNVA 524 L + L V A Sbjct: 325 LGDKKLLVQRA 335 Score = 33.1 bits (74), Expect = 0.47 Identities = 15/77 (19%), Positives = 39/77 (50%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G LP ++ +++ +L G ++ ++ + T S+G+ F I ++A+ Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319 Query: 195 FHRYDVNGRLLTVNKAA 245 + + + L V +A+ Sbjct: 320 LNGMQLGDKKLLVQRAS 336
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 57.8 bits (138), Expect = 2e-08 Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 17/191 (8%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQ----AGVVEV-SEVIYNRETDQSRGFGFVTMSTI 167 R ++YVGN+P+ + E + F G+ + + + +Q + F F+ ++ Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205 Query: 168 EEAEKAVEMFHRYDVNGRLLTVNKA---APRGARVERPPRD---------SGSSFRIYVG 311 +E +A+ F G+ L + + P E P S+ ++++G Sbjct: 206 DETTQAMA-FDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIG 264 Query: 312 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 491 LP ++D ++ EL + G + +V D TG S+G+ F D AIA L+G Sbjct: 265 GLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 324 Query: 492 LEGRALRVNVA 524 L + L V A Sbjct: 325 LGDKKLLVQRA 335 Score = 34.3 bits (77), Expect = 0.21 Identities = 18/89 (20%), Positives = 44/89 (49%), Gaps = 2/89 (2%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+++G LP ++ +++ +L G ++ ++ + T S+G+ F I ++A+ Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319 Query: 195 FHRYDVNGRLLTVNKAA--PRGARVERPP 275 + + + L V +A+ + A + PP Sbjct: 320 LNGMQLGDKKLLVQRASVGAKNATLVSPP 348
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 57.4 bits (137), Expect = 2e-08 Identities = 44/165 (26%), Positives = 74/165 (44%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K+ V NLP D + + + L + + + Y D+++ FVT+ E+A+ A++M Sbjct: 70 KILVKNLPQDSNCQEVHDLLKDYDL----KYCY---VDRNKRTAFVTLLNGEQAQNAIQM 122 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 FH+Y G+ L V+ P D+ + + N+P EL +G + Sbjct: 123 FHQYSFRGKDLI----------VQLQPTDA----LLCITNVPISFTSEEFEELVRAYGNI 168 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 +VY TG S+G+GFV ++ A L G+ L AL Sbjct: 169 ERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASAL 213 Score = 51.2 bits (121), Expect = 2e-06 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 1/171 (0%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 +A + + N+P SE +L G +E ++Y+ T S+G+GFV + A KA Sbjct: 141 DALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKA- 199 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS-RLVELFSEH 365 R ++ GR L + + V + S + + LP DS L+++FS Sbjct: 200 ----RLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSV 255 Query: 366 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 K V ++ D + GF V ++ E+ ++ A DG +++G ++V+ Sbjct: 256 HKPVFCQLAQD-EGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVS 305
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 57.4 bits (137), Expect = 2e-08 Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 11/180 (6%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQ-----SRGFGFVTMSTIEEAEK 182 ++V NL + +ER ++F+ + + + + S GFGFV T +A+ Sbjct: 599 LFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQA 658 Query: 183 AVEMFHRYDVNGRLLTV---NKA---APRGARVERPPRDSGSSFRIYVGNLPWQVDDSRL 344 A+ Y ++ L V NKA A R + + + +I + NLP+Q + Sbjct: 659 ALAAMDGYKLDQHELVVRASNKAMDAAEERRREDTAKKIAARRTKIIIKNLPFQATKKDV 718 Query: 345 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 LF +G++ RV D +RGFGF S E ++A+ AL L GR L + A Sbjct: 719 RSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFA 777 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = +3 Query: 291 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 S R++V NLP+ +S L +FS+ GK+ + V +D + S+GF +V + A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 471 AALDGQSLEGRALRV 515 LDG+ +GR + + Sbjct: 360 KELDGKHFQGRLMHI 374 Score = 44.3 bits (103), Expect = 2e-04 Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 30/204 (14%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R + V N Y V + L +LFE G +++ ++ S V + +EA+K Sbjct: 481 RGNTAILVKNFSYGVKVDDLRKLFEPYG--QITRLLM----PPSGTIAIVEFARPDEAQK 534 Query: 183 AVEMFHRYDVNGRLLTVNKA---------APRGARVERPPRDSGSSFR------------ 299 A + V +L + KA AP+ + +E G S Sbjct: 535 AFKGLAYRKVGDSILFLEKAPANLFDATTAPQTSVLETKAVSQGFSTADTFAAEDGDEPV 594 Query: 300 ----IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQE 452 ++V NL + + R E+F V AR+ D R S GFGFV ++ Sbjct: 595 VTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKA 654 Query: 453 ELDDAIAALDGQSLEGRALRVNVA 524 + A+AA+DG L+ L V + Sbjct: 655 QAQAALAAMDGYKLDQHELVVRAS 678 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/83 (26%), Positives = 40/83 (48%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R ++++V NLPYD L +F + G +E V ++ + S+GF +V + A + Sbjct: 298 RLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQ 357 Query: 183 AVEMFHRYDVNGRLLTVNKAAPR 251 A + GRL+ + A + Sbjct: 358 AYKELDGKHFQGRLMHILPATAK 380
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 57.4 bits (137), Expect = 2e-08 Identities = 30/76 (39%), Positives = 45/76 (59%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 +I+VG LP+ D+ L + F G + +A V+ DR TG+SRG+GFVTMA + + A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 477 LDGQSLEGRALRVNVA 524 ++GR VN+A Sbjct: 72 -PNPIIDGRKANVNLA 86 Score = 55.1 bits (131), Expect = 1e-07 Identities = 39/101 (38%), Positives = 56/101 (55%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 K++VG LPY L + FE G +E + VI +R+T +SRG+GFVTM+ AE+A + Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNL 317 + ++GR VN A GA+ PR + F I V L Sbjct: 72 PNPI-IDGRKANVN-LAYLGAK----PRSLQTGFAIGVQQL 106
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 57.0 bits (136), Expect = 3e-08 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 3/165 (1%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETD--QSRGFGFVTMSTIEEAEKAV 188 K++VG +P + L +LFEQ G V V+ +R + QS+G FVT T + A +A Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 H V + + P + D ++++G + + ++ + +FS G Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR----KLFIGMISKKCTENDIRVMFSSFG 132 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL-DGQSLEG 500 ++ + R++ D G SRG FVT ++ AI A+ Q++EG Sbjct: 133 QIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 176 Score = 52.0 bits (123), Expect = 1e-06 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%) Frame = +3 Query: 132 SRGFGFVTMSTIEEAEKAVEMFHRYDV-------NGRLLTVNKAAPRGARVERPPRDSGS 290 S G T ST+E +A +Y N LLT G++ E P G+ Sbjct: 345 SSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGP---EGA 401 Query: 291 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 + IY +LP + D L+++F G VV A+V D+ T S+ FGFV+ + AI Sbjct: 402 NLFIY--HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 459 Query: 471 AALDGQSLEGRALRVNV 521 +++G + + L+V + Sbjct: 460 QSMNGFQIGMKRLKVQL 476 Score = 38.9 bits (89), Expect = 0.009 Identities = 19/74 (25%), Positives = 41/74 (55%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 A +++ +LP + + L Q+F G V ++V +++T+ S+ FGFV+ A+ A++ Sbjct: 401 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 460 Query: 192 MFHRYDVNGRLLTV 233 + + + + L V Sbjct: 461 SMNGFQIGMKRLKV 474 Score = 35.0 bits (79), Expect = 0.12 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +3 Query: 261 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTG--RSRGFGFV 434 ++ P + + +++VG +P + L ELF ++G V + V+ DR +S+G FV Sbjct: 5 LDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFV 64 Query: 435 TMASQEELDDAIAAL 479 T +++ +A AL Sbjct: 65 TFYTRKAALEAQNAL 79
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 57.0 bits (136), Expect = 3e-08 Identities = 31/91 (34%), Positives = 49/91 (53%) Frame = +3 Query: 21 YVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFH 200 +V L + L LF + G V ++V+ N + +R +GFVTMST EEA K + H Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 490 Query: 201 RYDVNGRLLTVNKAAPRGARVERPPRDSGSS 293 + +++G++++V KA A P R G S Sbjct: 491 KTELHGKMISVEKAKSEPAGKRVPDRRDGDS 521 Score = 47.0 bits (110), Expect = 3e-05 Identities = 38/133 (28%), Positives = 58/133 (43%) Frame = +3 Query: 126 DQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIY 305 D + F F + + A K D + + R +R E+ G +F + Sbjct: 374 DDVKKFAFDACNDVPAAPKESSASEGADQKMSSVEDDSDTKRLSREEKGRSSCGRNF--W 431 Query: 306 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 485 V L + L LFS +GKVV A+VV + + +R +GFVTM++ EE I L Sbjct: 432 VSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHK 491 Query: 486 QSLEGRALRVNVA 524 L G+ + V A Sbjct: 492 TELHGKMISVEKA 504
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 56.6 bits (135), Expect = 4e-08 Identities = 37/143 (25%), Positives = 80/143 (55%), Gaps = 3/143 (2%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++VG +P D+ + L LFE+AG + ++ + T +RG+ FVT T E A++AV++ Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222 Query: 195 FHRYDV-NGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 ++ +++ +G+ + V S ++ R++VG++P +++E FS+ + Sbjct: 223 YNNHEIRSGKHIGV--------------CISVANNRLFVGSIPKSKTKEQILEEFSKVTE 268 Query: 372 VVDARVVYDR--DTGRSRGFGFV 434 + ++Y + D ++RGF F+ Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFL 291 Score = 46.6 bits (109), Expect = 4e-05 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Frame = +3 Query: 270 PPRDSGSSFR-------IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 428 PP DS S + I+VG +P + + LV LF + G + D R++ D TG +RG+ Sbjct: 147 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 206 Query: 429 FVTMASQEELDDAI 470 FVT ++E +A+ Sbjct: 207 FVTFCTKEAAQEAV 220
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 56.6 bits (135), Expect = 4e-08 Identities = 37/143 (25%), Positives = 80/143 (55%), Gaps = 3/143 (2%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++VG +P D+ + L LFE+AG + ++ + T +RG+ FVT T E A++AV++ Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222 Query: 195 FHRYDV-NGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 ++ +++ +G+ + V S ++ R++VG++P +++E FS+ + Sbjct: 223 YNNHEIRSGKHIGV--------------CISVANNRLFVGSIPKSKTKEQILEEFSKVTE 268 Query: 372 VVDARVVYDR--DTGRSRGFGFV 434 + ++Y + D ++RGF F+ Sbjct: 269 GLTDVILYHQPDDKKKNRGFCFL 291 Score = 46.6 bits (109), Expect = 4e-05 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Frame = +3 Query: 270 PPRDSGSSFR-------IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 428 PP DS S + I+VG +P + + LV LF + G + D R++ D TG +RG+ Sbjct: 147 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 206 Query: 429 FVTMASQEELDDAI 470 FVT ++E +A+ Sbjct: 207 FVTFCTKEAAQEAV 220
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 56.6 bits (135), Expect = 4e-08 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 3/165 (1%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETD--QSRGFGFVTMSTIEEAEKAV 188 K++VG +P + L +LFEQ G V ++ +R + QS+G FVT T + A +A Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 189 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHG 368 H V + + P + D ++++G + + ++ + +FS G Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR----KLFIGMISKKCTENDIRVMFSSFG 132 Query: 369 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL-DGQSLEG 500 ++ + R++ D G SRG FVT ++ AI A+ Q++EG Sbjct: 133 QIEECRILRGPD-GLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEG 176 Score = 52.0 bits (123), Expect = 1e-06 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%) Frame = +3 Query: 132 SRGFGFVTMSTIEEAEKAVEMFHRYDV-------NGRLLTVNKAAPRGARVERPPRDSGS 290 S G T ST+E +A +Y N LLT G++ E P G+ Sbjct: 345 SSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGP---EGA 401 Query: 291 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 470 + IY +LP + D L+++F G VV A+V D+ T S+ FGFV+ + AI Sbjct: 402 NLFIY--HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 459 Query: 471 AALDGQSLEGRALRVNV 521 +++G + + L+V + Sbjct: 460 QSMNGFQIGMKRLKVQL 476 Score = 38.9 bits (89), Expect = 0.009 Identities = 19/74 (25%), Positives = 41/74 (55%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 A +++ +LP + + L Q+F G V ++V +++T+ S+ FGFV+ A+ A++ Sbjct: 401 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 460 Query: 192 MFHRYDVNGRLLTV 233 + + + + L V Sbjct: 461 SMNGFQIGMKRLKV 474 Score = 34.7 bits (78), Expect = 0.16 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +3 Query: 261 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTG--RSRGFGFV 434 ++ P + + +++VG +P + L ELF ++G V + ++ DR +S+G FV Sbjct: 5 LDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFV 64 Query: 435 TMASQEELDDAIAAL 479 T +++ +A AL Sbjct: 65 TFYTRKAALEAQNAL 79
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 56.6 bits (135), Expect = 4e-08 Identities = 37/143 (25%), Positives = 80/143 (55%), Gaps = 3/143 (2%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++VG +P D+ + L LFE+AG + ++ + T +RG+ FVT T E A++AV++ Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132 Query: 195 FHRYDV-NGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 ++ +++ +G+ + V S ++ R++VG++P +++E FS+ + Sbjct: 133 YNNHEIRSGKHIGV--------------CISVANNRLFVGSIPKSKTKEQILEEFSKVTE 178 Query: 372 VVDARVVYDR--DTGRSRGFGFV 434 + ++Y + D ++RGF F+ Sbjct: 179 GLTDVILYHQPDDKKKNRGFCFL 201 Score = 46.6 bits (109), Expect = 4e-05 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Frame = +3 Query: 270 PPRDSGSSFR-------IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 428 PP DS S + I+VG +P + + LV LF + G + D R++ D TG +RG+ Sbjct: 57 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 116 Query: 429 FVTMASQEELDDAI 470 FVT ++E +A+ Sbjct: 117 FVTFCTKEAAQEAV 130
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 56.2 bits (134), Expect = 5e-08 Identities = 47/145 (32%), Positives = 66/145 (45%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++VGNLP D+ + +LF + G E EV N+ +GFGF+ + + AE A Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYG--EPGEVFINK----GKGFGFIKLESRALAEIAKAE 351 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + GR L V A A + V NL V + L E FS+ G + Sbjct: 352 LDDTPMRGRQLRVRFATHAAA--------------LSVRNLSPYVSNELLEEAFSQFGPI 397 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQ 449 A V+ D D GRS G G V AS+ Sbjct: 398 ERAVVIVD-DRGRSTGKGIVEFASK 421 Score = 45.4 bits (106), Expect = 9e-05 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R++VGNLP + + LF+++G+ + + + +GFGF+ + S+ + A A Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 351 Query: 477 LDGQSLEGRALRVNVA 524 LD + GR LRV A Sbjct: 352 LDDTPMRGRQLRVRFA 367
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 56.2 bits (134), Expect = 5e-08 Identities = 47/145 (32%), Positives = 66/145 (45%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++VGNLP D+ + +LF + G E EV N+ +GFGF+ + + AE A Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYG--EPGEVFINK----GKGFGFIKLESRALAEIAKAE 343 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKV 374 + GR L V A A + V NL V + L E FS+ G + Sbjct: 344 LDDTPMRGRQLRVRFATHAAA--------------LSVRNLSPYVSNELLEEAFSQFGPI 389 Query: 375 VDARVVYDRDTGRSRGFGFVTMASQ 449 A V+ D D GRS G G V AS+ Sbjct: 390 ERAVVIVD-DRGRSTGKGIVEFASK 413 Score = 45.4 bits (106), Expect = 9e-05 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R++VGNLP + + LF+++G+ + + + +GFGF+ + S+ + A A Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 343 Query: 477 LDGQSLEGRALRVNVA 524 LD + GR LRV A Sbjct: 344 LDDTPMRGRQLRVRFA 359
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 56.2 bits (134), Expect = 5e-08 Identities = 24/73 (32%), Positives = 48/73 (65%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 I+VG LP+++ + ++ +FS++G++V+ +V D+ TG+S+GF F+ Q A+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 480 DGQSLEGRALRVN 518 +G ++GR +RV+ Sbjct: 98 NGIKIKGRTIRVD 110 Score = 45.4 bits (106), Expect = 9e-05 Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 8/131 (6%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 +H A ++VG LPY++ + +F Q G + ++ +++T +S+GF F+ Sbjct: 33 KHSAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVL 92 Query: 183 AVEMFHRYDVNGRLLTV----NKAAPRGAR----VERPPRDSGSSFRIYVGNLPWQVDDS 338 AV+ F+ + GR + V N AP+ + V R ++ G + + P +V + Sbjct: 93 AVDNFNGIKIKGRTIRVDHVSNYRAPQESEDVDDVTRELQEKGCGVKTPPSSPP-EVSED 151 Query: 339 RLVELFSEHGK 371 +L +H K Sbjct: 152 EDAKLTKKHKK 162
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 56.2 bits (134), Expect = 5e-08 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 12/183 (6%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQ-----SRGFGFVTMSTIEEA 176 + ++V NL + S+ L F+ ++V + + S GFGFV T ++A Sbjct: 599 SSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQA 658 Query: 177 EKAVEMFHRYDVNGRLLTVNKAAPRG--ARVERPPRD-----SGSSFRIYVGNLPWQVDD 335 + A+++ ++ ++V KA+ RG A ER D + ++ V NLP++V Sbjct: 659 QAALKVMDGQVLDAHKISV-KASHRGLDAAEERRREDMAKKAANQGTKLVVKNLPFEVTK 717 Query: 336 SRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 + LFS +GK+V R+ + SRGF F ++ +E +A +L + GR L + Sbjct: 718 KEVRTLFSAYGKLVALRIP-KKFNQSSRGFAFAEFSTAKEALNAFNSLKDTHILGRRLVI 776 Query: 516 NVA 524 + A Sbjct: 777 DFA 779 Score = 37.4 bits (85), Expect = 0.025 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 18/119 (15%) Frame = +3 Query: 222 LLTVNKAAPRGAR---VERPP------RDSGS----SFRIYVGNLPWQVDDSRLVELFSE 362 L T N A P AR V++P RD + ++V NL + L + F Sbjct: 562 LFTDNVAVPTDARPAGVQKPSVADLLERDDAEEQLETSSLFVRNLNFSTTSQGLTDAFKH 621 Query: 363 HGKVVDARVVYDRDTGR-----SRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 V A+V D + S GFGFV ++++ A+ +DGQ L+ + V + Sbjct: 622 LDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISVKAS 680 Score = 30.4 bits (67), Expect = 3.1 Identities = 21/79 (26%), Positives = 41/79 (51%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 191 ++++V NLP + + F G +V++V + +R GFV + E+A +AV+ Sbjct: 5 SRIFVKNLPPTITEAEFRKHFSAEGR-QVTDV----KLIPARHIGFVGYKSAEDAARAVK 59 Query: 192 MFHRYDVNGRLLTVNKAAP 248 F+R + ++V+ A P Sbjct: 60 YFNRSFIRMSRISVDIAKP 78 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = +3 Query: 288 SSFRIYVGNLPWQVDDSRLVELFSEHGK-VVDARVVYDRDTGRSRGFGFVTMASQEELDD 464 SS RI+V NLP + ++ + FS G+ V D +++ +R GFV S E+ Sbjct: 3 SSSRIFVKNLPPTITEAEFRKHFSAEGRQVTDVKLI------PARHIGFVGYKSAEDAAR 56 Query: 465 AIAALDGQSLEGRALRVNVA 524 A+ + + + V++A Sbjct: 57 AVKYFNRSFIRMSRISVDIA 76
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 55.8 bits (133), Expect = 7e-08 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 11/182 (6%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R V+V L + S L FEQAG V ++++ ++ + +S+G +V + + Sbjct: 237 RDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQA 296 Query: 183 AVEMFHRYDVNGRLLTV-----------NKAAPRGARVERPPRDSGSSFRIYVGNLPWQV 329 A+ + + RLL + N+ A A + R R+ V N+ + + Sbjct: 297 AIALSGK-----RLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNL 351 Query: 330 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 509 D + +F G + + D D RS+GFG++ + +A+ ++G L GR + Sbjct: 352 TDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNM 410 Query: 510 RV 515 RV Sbjct: 411 RV 412 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/84 (29%), Positives = 45/84 (53%) Frame = +3 Query: 249 RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 428 R +++ RD + ++V L ++ L + F + G V DA++V D+ +GRS+G Sbjct: 228 RSSKLSEEERDRRT---VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVA 284 Query: 429 FVTMASQEELDDAIAALDGQSLEG 500 +V ++ + AI AL G+ L G Sbjct: 285 YVEFCHEDSVQAAI-ALSGKRLLG 307
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 55.8 bits (133), Expect = 7e-08 Identities = 30/79 (37%), Positives = 46/79 (58%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +++V N+P+ L +FE+ GVV E+I+N S+GFGFVTM ++AE+A + Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAERARQE 211 Query: 195 FHRYDVNGRLLTVNKAAPR 251 H + GR + VN A R Sbjct: 212 LHGSMIEGRKIEVNCATAR 230 Score = 53.5 bits (127), Expect = 3e-07 Identities = 27/76 (35%), Positives = 44/76 (57%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 R++V N+P++ D L +F + G V D ++++ S+GFGFVTM ++ + A Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAERARQE 211 Query: 477 LDGQSLEGRALRVNVA 524 L G +EGR + VN A Sbjct: 212 LHGSMIEGRKIEVNCA 227
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 55.1 bits (131), Expect = 1e-07 Identities = 23/73 (31%), Positives = 48/73 (65%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 I++G LP+++ + ++ +FS++G++V+ +V D+ TG+S+GF F+ Q A+ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 480 DGQSLEGRALRVN 518 +G ++GR +RV+ Sbjct: 98 NGIKIKGRTIRVD 110 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/94 (24%), Positives = 47/94 (50%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 + A +++G LPY++ + +F Q G + ++ +++T +S+GF F+ Sbjct: 33 KDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTIL 92 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDS 284 AV+ F+ + GR + V+ + R P+DS Sbjct: 93 AVDNFNGIKIKGRTIRVDHVSN-----YRAPKDS 121
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 55.1 bits (131), Expect = 1e-07 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 9/178 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSR--GFGFVTMSTIEEAEKAVE 191 +++G+L +D+ + QL+ +V+ ++ + + FV S+ AE+A+ Sbjct: 87 LWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALM 146 Query: 192 MFHRYDVNGRLLT--VNKAAPRGAR----VERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 353 ++ + G T +N A G + V R P F I+VG+L +DS L Sbjct: 147 KYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPE-----FSIFVGDLLPTTEDSDLFMT 201 Query: 354 F-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 F S + A+++ D TG SR +GFV +S++E A+ + G +GR LR++VA Sbjct: 202 FRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259 Score = 41.2 bits (95), Expect = 0.002 Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 21/180 (11%) Frame = +3 Query: 9 EAKVYVGNL-PYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 E ++VG+L P DS+ +++I + T SR +GFV S+ +E + A Sbjct: 181 EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHA 240 Query: 186 VEMFHRYDVNGRLLTVNKAAPRG---------------ARVERPPRDSGSSF-----RIY 305 + Y GR L ++ A+P+ + R P S ++ Sbjct: 241 LMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVF 300 Query: 306 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 485 VG L + + L F G++++ ++ + +G GFV + + + AI + G Sbjct: 301 VGGLASNLSEKDLQVCFQPFGRILNIKIPF------GKGCGFVQYSEKSAAEKAINTMQG 354
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 54.7 bits (130), Expect = 2e-07 Identities = 47/172 (27%), Positives = 77/172 (44%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R+ K+ + LP DV ++ + L E+ Y D+ +G FVT+ E+AE Sbjct: 56 RNRRKILIRGLPGDVTNQEVHDLLSDY------ELKYCF-VDKYKGTAFVTLLNGEQAEA 108 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSE 362 A+ FH+ + R L+V + P D+ + V NLP + ++ EL Sbjct: 109 AINTFHQSRLRERELSV----------QLQPTDA----LLCVANLPPSLTQAQFEELVRP 154 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 G + +VY TG S+G+GF ++ A + L G+ L R L V+ Sbjct: 155 FGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH 206
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 54.7 bits (130), Expect = 2e-07 Identities = 47/172 (27%), Positives = 77/172 (44%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R+ K+ + LP DV ++ + L E+ Y D+ +G FVT+ E+AE Sbjct: 56 RNRRKILIRGLPGDVTNQEVHDLLSDY------ELKYCF-VDKYKGTAFVTLLNGEQAEA 108 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSE 362 A+ FH+ + R L+V + P D+ + V NLP + ++ EL Sbjct: 109 AINTFHQSRLRERELSV----------QLQPTDA----LLCVANLPPSLTQAQFEELVRP 154 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 G + +VY TG S+G+GF ++ A + L G+ L R L V+ Sbjct: 155 FGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH 206
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 54.7 bits (130), Expect = 2e-07 Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 21/187 (11%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLF---------EQAGVVEVS--------EVIYNRETDQSRGFG 146 V++GNL +D + L + F E++ V E N +++GF Sbjct: 127 VWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAAKNSNAMKNKGFC 186 Query: 147 FVTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS----SFRIYVGN 314 ++ +E+ + +E+ + +NGR + + + R ++ + S S ++VGN Sbjct: 187 YMFFKNVEQMKAVLELSESH-LNGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGN 245 Query: 315 LPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSL 494 L + V D L + F G +V R+ D+G+ +GF F+ ++E + + + + Sbjct: 246 LSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKI 305 Query: 495 EGRALRV 515 GR LR+ Sbjct: 306 AGRPLRM 312 Score = 36.2 bits (82), Expect = 0.056 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 5/100 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++VGNL +DV + L + F+ G + + ++ + +GF F+ E + ++ Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDK 300 Query: 198 HRYDVNGRLLTVNKAAPRGAR-----VERPPRDSGSSFRI 302 + GR L + R R VE R++ SSF I Sbjct: 301 SCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSSFDI 340
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 54.7 bits (130), Expect = 2e-07 Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 9/178 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+ GN YD L +LF + G VE D GF FV M +AE A+ Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVE--------RVDMKAGFAFVYMEDERDAEDAIRAL 55 Query: 198 HRYDV--NGRLLTV--NKAAPRGARVERPPRDSGSSFR----IYVGNLPWQVDDSRLVEL 353 R++ GR L V K GA R S S R ++V N Q +R +E Sbjct: 56 DRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLER 115 Query: 354 -FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 F +GK+V+ R+ R F F+ +QE+ A+ A + L + + V A Sbjct: 116 HFEPYGKIVNVRI--------RRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYA 165
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 54.7 bits (130), Expect = 2e-07 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 2/137 (1%) Frame = +3 Query: 120 ETDQSRGFGFVTMSTIEEAEKAVEMFHRYDV--NGRLLTVNKAAPRGARVERPPRDSGSS 293 ETD G + + ++ A + ++ + +V N ++K P+ A P Sbjct: 45 ETDSDAGSIAMNVHQLDTAGEPLQSMNEDEVDPNNESTALDKKEPQSA----PEGSENLG 100 Query: 294 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 ++V + ++ + L ++FS+ G V R++ + T SRGFGF++ ++ EE AI Sbjct: 101 NDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAID 160 Query: 474 ALDGQSLEGRALRVNVA 524 L+ Q GR L V A Sbjct: 161 NLNSQEFYGRVLNVQKA 177 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/75 (33%), Positives = 42/75 (56%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V + + + L Q+F + G V ++ T SRGFGF++ ST+EEA A++ Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 198 HRYDVNGRLLTVNKA 242 + + GR+L V KA Sbjct: 163 NSQEFYGRVLNVQKA 177
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 54.7 bits (130), Expect = 2e-07 Identities = 47/172 (27%), Positives = 77/172 (44%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEK 182 R+ K+ + LP DV ++ + L E+ Y D+ +G FVT+ E+AE Sbjct: 56 RNRRKILIRGLPGDVTNQEVHDLLSDY------ELKYCF-VDKYKGTAFVTLLNGEQAEA 108 Query: 183 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSE 362 A+ FH+ + R L+V + P D+ + V NLP + + EL Sbjct: 109 AINAFHQSRLRERELSV----------QLQPTDA----LLCVANLPPSLTQQQFEELVRP 154 Query: 363 HGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 G + +VY TG+S+G+GF ++ A + L G+ L R L V+ Sbjct: 155 FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH 206
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 54.7 bits (130), Expect = 2e-07 Identities = 29/88 (32%), Positives = 45/88 (51%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+VGN+PYDV +++ ++F Q G V+ +++ + ET +G+GF E AV Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV--- 65 Query: 198 HRYDVNGRLLTVNKAAPRGARVERPPRD 281 R L ++ PR RVE P D Sbjct: 66 -------RKLNNSELGPRKIRVEFPSND 86 Score = 52.0 bits (123), Expect = 1e-06 Identities = 23/72 (31%), Positives = 41/72 (56%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 ++VGN+P+ V + ++ E+F++ G V ++V D +TG +G+GF E A+ L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 480 DGQSLEGRALRV 515 + L R +RV Sbjct: 69 NNSELGPRKIRV 80
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/78 (33%), Positives = 48/78 (61%) Frame = +3 Query: 285 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 464 G ++ I++ NL + +++ L +LF G V ++V D T + +G+GFV+M + +E Sbjct: 399 GGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAM 458 Query: 465 AIAALDGQSLEGRALRVN 518 AI AL+G ++ R L+V+ Sbjct: 459 AIRALNGYTMGNRVLQVS 476 Score = 48.5 bits (114), Expect = 1e-05 Identities = 22/73 (30%), Positives = 43/73 (58%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL + + L QLF G V+ +++ + T+Q +G+GFV+M+ +EA A+ Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463 Query: 198 HRYDVNGRLLTVN 236 + Y + R+L V+ Sbjct: 464 NGYTMGNRVLQVS 476 Score = 38.5 bits (88), Expect = 0.011 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETD-QSRGFGFVTMSTIEEAEKAV 188 A +YV LP + + L +F G + S ++ N D Q++G GF+ EEA +A+ Sbjct: 248 ANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 307
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/78 (33%), Positives = 48/78 (61%) Frame = +3 Query: 285 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 464 G ++ I++ NL + +++ L +LF G V ++V D T + +G+GFV+M + +E Sbjct: 435 GGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAM 494 Query: 465 AIAALDGQSLEGRALRVN 518 AI AL+G ++ R L+V+ Sbjct: 495 AIRALNGYTMGNRVLQVS 512 Score = 48.5 bits (114), Expect = 1e-05 Identities = 22/73 (30%), Positives = 43/73 (58%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 +++ NL + + L QLF G V+ +++ + T+Q +G+GFV+M+ +EA A+ Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499 Query: 198 HRYDVNGRLLTVN 236 + Y + R+L V+ Sbjct: 500 NGYTMGNRVLQVS 512 Score = 38.5 bits (88), Expect = 0.011 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +3 Query: 12 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETD-QSRGFGFVTMSTIEEAEKAV 188 A +YV LP + + L +F G + S ++ N D Q++G GF+ EEA +A+ Sbjct: 284 ANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 343
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 54.3 bits (129), Expect = 2e-07 Identities = 26/81 (32%), Positives = 42/81 (51%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 PR ++YVGNLP V + + ++F ++G++ D +GR F FV Sbjct: 2 PRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIK----YVDIKSGRGPAFAFVEFEDHR 57 Query: 453 ELDDAIAALDGQSLEGRALRV 515 + +DA+ A DG +GR +RV Sbjct: 58 DAEDAVRARDGYEFDGRRIRV 78 Score = 46.2 bits (108), Expect = 5e-05 Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 28/199 (14%) Frame = +3 Query: 9 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 188 + KVYVGNLP DV + + +F + G ++ ++ ++ + F FV +AE AV Sbjct: 8 DQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHRDAEDAV 63 Query: 189 EMFHRYDVNGRLLTV---NKAAPRGARVERPPRDSG----------------------SS 293 Y+ +GR + V PRG RP +D G + Sbjct: 64 RARDGYEFDGRRIRVEFTRGVGPRGPG-GRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTG 122 Query: 294 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 +R+ V LP L + + G V A V D G G V E++ A+ Sbjct: 123 YRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD-------GTGVVEFTRYEDVKYAVR 175 Query: 474 ALDG---QSLEGRALRVNV 521 LD +S EG + V Sbjct: 176 KLDDTKFRSHEGETAYIRV 194
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 54.3 bits (129), Expect = 2e-07 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 6/150 (4%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++++G LP D+ + L L E+ G + ++ + + +RG+ FVT S +EA+ A++ Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAIKQ 115 Query: 195 FHRYDV-NGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 + Y++ NGRLL V S + R++VG +P + E+ SE K Sbjct: 116 LNNYEIRNGRLLGVCA--------------SVDNCRLFVGGIP---KTKKREEILSEMKK 158 Query: 372 VVDARV---VYD--RDTGRSRGFGFVTMAS 446 V + V VY D ++RGF FV S Sbjct: 159 VTEGVVDVIVYPSAADKTKNRGFAFVEYES 188 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 I++G LP + + L+ L + GK+ + R++ D + G +RG+ FVT ++++E +AI L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAIKQL 116 Query: 480 DGQSL-EGRALRV 515 + + GR L V Sbjct: 117 NNYEIRNGRLLGV 129
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 53.5 bits (127), Expect = 3e-07 Identities = 27/75 (36%), Positives = 45/75 (60%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V L + L LF + G V ++V+ N + +R +GFVTMST +EA K + Sbjct: 453 LWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 512 Query: 198 HRYDVNGRLLTVNKA 242 HR +++GR+++V KA Sbjct: 513 HRTELHGRMISVEKA 527 Score = 49.3 bits (116), Expect = 6e-06 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Frame = +3 Query: 276 RDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 R S SS R ++V L + L LFS+HGKV+ A+VV + + +R +GFVTM++ + Sbjct: 444 RASCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSD 503 Query: 453 ELDDAIAALDGQSLEGRALRVNVA 524 E I+ L L GR + V A Sbjct: 504 EATKCISHLHRTELHGRMISVEKA 527
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 53.5 bits (127), Expect = 3e-07 Identities = 27/75 (36%), Positives = 45/75 (60%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++V L + L LF + G V ++V+ N + +R +GFVTMST +EA K + Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468 Query: 198 HRYDVNGRLLTVNKA 242 HR +++GR+++V KA Sbjct: 469 HRTELHGRMISVEKA 483 Score = 51.2 bits (121), Expect = 2e-06 Identities = 44/161 (27%), Positives = 68/161 (42%) Frame = +3 Query: 42 DVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGR 221 + SE LA+ +A E + + R F F + + A K D Sbjct: 328 EASSEELAEAPTEAPSPEARD-----SKEDGRKFDFDACNEVPPAPKESSTSEGADQKMS 382 Query: 222 LLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDR 401 K + E+ SGS ++V L + L LFS++GKVV A+VV + Sbjct: 383 SFKEEKDIKPIIKDEKGRVGSGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA 442 Query: 402 DTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + +R +GFVTM++ +E I+ L L GR + V A Sbjct: 443 RSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKA 483
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 53.5 bits (127), Expect = 3e-07 Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 12/181 (6%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 V+ GN YD L +LF + G VE D GF FV M +AE A+ Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVE--------RVDMKAGFAFVYMEDERDAEDAIRAL 55 Query: 198 HRYDV--NGRLLTVN-KAAPRGA--RVERPPRDSGSSFR----IYVGNLPWQVDDSRLVE 350 R++ GR L V + RG R R S SS R ++V N + D++R + Sbjct: 56 DRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVIN--FDADNTRTRD 113 Query: 351 L---FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 521 L F +GK+V+ R+ R F F+ +QE+ A+ A + L + + V Sbjct: 114 LEKHFEPYGKIVNVRI--------RRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEY 165 Query: 522 A 524 A Sbjct: 166 A 166
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 53.5 bits (127), Expect = 3e-07 Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 7/147 (4%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 +V+VG +P D+ + L LFE+AG + ++ + + Q+RG+ F+T E A++AV++ Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225 Query: 195 FHRYDVNGRLLTVNKAAPRGARVERPPRDSG-----SSFRIYVGNLPWQVDDSRLVELFS 359 Y++ RP + G ++ R++VG++P ++E FS Sbjct: 226 CDSYEI------------------RPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFS 267 Query: 360 EHGKVVDARVVYDR--DTGRSRGFGFV 434 + + + ++Y + D ++RGF F+ Sbjct: 268 KVTEGLVDVILYHQPDDKKKNRGFCFL 294 Score = 48.9 bits (115), Expect = 8e-06 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 8/93 (8%) Frame = +3 Query: 270 PPRDS-------GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 428 PP DS G ++VG +P + + LV LF + G + D R++ D +G++RG+ Sbjct: 150 PPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYA 209 Query: 429 FVTMASQEELDDAIAALDGQSLE-GRALRVNVA 524 F+T +E +A+ D + G+ L V ++ Sbjct: 210 FITFCGKEAAQEAVKLCDSYEIRPGKHLGVCIS 242 Score = 46.6 bits (109), Expect = 4e-05 Identities = 42/175 (24%), Positives = 83/175 (47%), Gaps = 5/175 (2%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQ--SRGFGFVTMSTIEEAEKAV 188 +++VG++P + E + + F + V ++Y++ D+ +RGF F+ + A +A Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306 Query: 189 E--MFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRI-YVGNLPWQVDDSRLVELFS 359 M + V G ++TV A P VE P + + ++ +V NL V + L + FS Sbjct: 307 RRLMSGKVKVWGNVVTVEWADP----VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 362 Query: 360 EHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 E GK+ + + D + FV + A+ ++G+ +EG + + +A Sbjct: 363 EFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLA 409
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 53.1 bits (126), Expect = 4e-07 Identities = 28/77 (36%), Positives = 48/77 (62%) Frame = +3 Query: 294 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 473 FR++VGNL V+D L + FSE+ +V +VV DR+ G++RGFGFV+ ++ A Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWR 88 Query: 474 ALDGQSLEGRALRVNVA 524 +G+ + R ++++ A Sbjct: 89 EKNGKYIGSRPVKLSRA 105 Score = 38.5 bits (88), Expect = 0.011 Identities = 21/57 (36%), Positives = 36/57 (63%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 185 +++VGNL DV+ E L Q F + + ++V+ +RE ++RGFGFV+ ++ KA Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKA 86
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 53.1 bits (126), Expect = 4e-07 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 9/178 (5%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQ-----SRGFGFVTMSTIEEAEK 182 +++ NL + ++ L F+ V++V + S GFGFV T E+A Sbjct: 665 IFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANA 724 Query: 183 AVEMFHRYDVNGRLLTVN----KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 350 + ++G + + +A+ G + + SG +I V NLP++ + E Sbjct: 725 VIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSG---KIIVKNLPFEATRKDVFE 781 Query: 351 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 LF+ G++ RV D +RGF FV +E ++A+ L G L GR L + A Sbjct: 782 LFNSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYA 838 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/93 (25%), Positives = 44/93 (47%) Frame = +3 Query: 237 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 416 +A P+ E + R+++ N+ + + +LFS G++ + V D TG+S Sbjct: 326 RAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQS 385 Query: 417 RGFGFVTMASQEELDDAIAALDGQSLEGRALRV 515 +GF +V + +A LD Q +GR L + Sbjct: 386 KGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHI 418 Score = 40.0 bits (92), Expect = 0.004 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQS-RGFGFVTMSTIEEAE 179 + K+ V NLP++ + + +LF G ++ V ++ D+S RGF FV +EAE Sbjct: 760 KKSGKIIVKNLPFEATRKDVFELFNSFG--QLKSVRVPKKFDKSARGFAFVEFLLPKEAE 817 Query: 180 KAVEMFHRYDVNGRLLTVNKA 242 A++ H + GR L + A Sbjct: 818 NAMDQLHGVHLLGRRLVMQYA 838 Score = 38.1 bits (87), Expect = 0.015 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%) Frame = +3 Query: 285 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQ 449 G + I++ NL + + L + F V A+V D S GFGFV ++ Sbjct: 660 GPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTK 719 Query: 450 EELDDAIAALDGQSLEGRALRVNVA 524 E+ + IAA+DG ++G +++ ++ Sbjct: 720 EQANAVIAAMDGTVIDGHKIQLKLS 744 Score = 35.4 bits (80), Expect = 0.096 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 15/91 (16%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGK---------------VVDARVVYDRDTGRSRGFGF 431 RI V LP + D L E F++ + + D +++ DR+ G SR FGF Sbjct: 3 RIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRN-GESRRFGF 61 Query: 432 VTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + ++E+ DA+ +G + + V++A Sbjct: 62 IGYRNEEDAFDAVEYFNGSFINTSKIEVSMA 92 Score = 35.0 bits (79), Expect = 0.12 Identities = 20/73 (27%), Positives = 33/73 (45%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++++ N+ Y E +LF G +E V + T QS+GF +V + A A Sbjct: 346 RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVE 405 Query: 195 FHRYDVNGRLLTV 233 + GRLL + Sbjct: 406 LDKQIFQGRLLHI 418
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 52.8 bits (125), Expect = 6e-07 Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 6/150 (4%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++++G LP D+ + L L E+ G + ++ + + +RG+ FVT S EA+ A++ Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVEAKNAIKQ 115 Query: 195 FHRYDV-NGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 + Y++ NGRLL V S + R++VG +P + E+ SE K Sbjct: 116 LNNYEIRNGRLLGVCA--------------SVDNCRLFVGGIP---KTKKREEILSEMKK 158 Query: 372 VVDARV---VYD--RDTGRSRGFGFVTMAS 446 V + V VY D ++RGF FV S Sbjct: 159 VTEGVVDVIVYPSAADKTKNRGFAFVEYES 188 Score = 42.7 bits (99), Expect = 6e-04 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 I++G LP + + L+ L + GK+ + R++ D + G +RG+ FVT +++ E +AI L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAKNAIKQL 116 Query: 480 DGQSL-EGRALRV 515 + + GR L V Sbjct: 117 NNYEIRNGRLLGV 129
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 52.4 bits (124), Expect = 8e-07 Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 6/150 (4%) Frame = +3 Query: 15 KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEM 194 ++++G LP D+ + L L E+ G + ++ + + +RG+ FVT S EA+ A++ Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLEAKNAIKQ 115 Query: 195 FHRYDV-NGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGK 371 + Y++ NGRLL V S + R++VG +P + E+ SE K Sbjct: 116 LNNYEIRNGRLLGVCA--------------SVDNCRLFVGGIP---KTKKREEILSEMKK 158 Query: 372 VVDARV---VYD--RDTGRSRGFGFVTMAS 446 V + V VY D ++RGF FV S Sbjct: 159 VTEGVVDVIVYPSAADKTKNRGFAFVEYES 188 Score = 42.4 bits (98), Expect = 8e-04 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 I++G LP + + L+ L + GK+ + R++ D + G +RG+ FVT +++ E +AI L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAKNAIKQL 116 Query: 480 DGQSL-EGRALRV 515 + + GR L V Sbjct: 117 NNYEIRNGRLLGV 129
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 52.4 bits (124), Expect = 8e-07 Identities = 26/74 (35%), Positives = 44/74 (59%) Frame = +3 Query: 21 YVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFH 200 +V L + L LF + G V ++V+ N + +R +GFVTMST EEA K + H Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468 Query: 201 RYDVNGRLLTVNKA 242 + +++G++++V KA Sbjct: 469 KTELHGKMISVEKA 482 Score = 46.2 bits (108), Expect = 5e-05 Identities = 43/161 (26%), Positives = 68/161 (42%) Frame = +3 Query: 42 DVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGR 221 + SE LA+ +A E + + R F F + + A K D Sbjct: 329 EASSEELAEAPTEAPSPEARD-----SKEDGRKFDFDACNEVPPAPKESSTSEGADQKMS 383 Query: 222 LLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDR 401 + R ++ E+ G +F +V L + L LFS++GKVV A+VV + Sbjct: 384 SPEDDSDTKRLSKEEKGRSSCGRNF--WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA 441 Query: 402 DTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 524 + +R +GFVTM++ EE I L L G+ + V A Sbjct: 442 RSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKA 482
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 52.4 bits (124), Expect = 8e-07 Identities = 23/76 (30%), Positives = 47/76 (61%) Frame = +3 Query: 297 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 476 ++++G L + ++ L +F +HG + + ++ DR T +SRGF F+T + + +A Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 477 LDGQSLEGRALRVNVA 524 ++G+SL G+A++V A Sbjct: 68 MNGKSLHGKAIKVEQA 83 Score = 42.0 bits (97), Expect = 0.001 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 5/98 (5%) Frame = +3 Query: 6 HEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRE-TDQSRGFGFVTMSTIEEAEK 182 H K+++G L + + + L +F + G +SEV+ ++ T +SRGF F+T +A+ Sbjct: 6 HPGKLFIGGLNRETNEKMLKAVFGKHG--PISEVLLIKDRTSKSRGFAFITFENPADAKN 63 Query: 183 AVEMFHRYDVNGRLLTVNKAA----PRGARVERPPRDS 284 A + + ++G+ + V +A G R RPP S Sbjct: 64 AAKDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASS 100
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 52.0 bits (123), Expect = 1e-06 Identities = 33/84 (39%), Positives = 47/84 (55%) Frame = +3 Query: 273 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 452 P S F +VGNL + + ++ L + F E V R+V D T RSRGFG+V + + Sbjct: 87 PIPSEPPFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETAD 144 Query: 453 ELDDAIAALDGQSLEGRALRVNVA 524 L A+ AL G+ L GR +R+ VA Sbjct: 145 TLSAAL-ALSGEDLMGRPVRITVA 167 Score = 40.8 bits (94), Expect = 0.002 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Frame = +3 Query: 21 YVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFH 200 +VGNL +D+ L F + GV + VI + T++SRGFG+V T + A+ + Sbjct: 97 HVGNLSFDLTENDLGDFFGE-GVTSIRLVI-DPLTERSRGFGYVEFETADTLSAALALSG 154 Query: 201 RYDVNGRLLTVNKAAPRG--ARVERPPRD 281 D+ GR + + A PR AR ER D Sbjct: 155 E-DLMGRPVRITVAEPRRSFAREERSTGD 182
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = +3 Query: 342 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 L E+FS +G + VVYD+ TGRSRGF FV ++ +A+ +G L+GR +RV+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193 Score = 43.5 bits (101), Expect = 4e-04 Identities = 20/71 (28%), Positives = 42/71 (59%) Frame = +3 Query: 60 LAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNK 239 L ++F + G + V+Y++ T +SRGF FV I+++++A+E + +++GR + V+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 194 Query: 240 AAPRGARVERP 272 + + A P Sbjct: 195 SITKRAHTPTP 205
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 51.6 bits (122), Expect = 1e-06 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 30/185 (16%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEV-------------------IYNRETDQSRG 140 ++VGNL + E L F + + EV + + Q++G Sbjct: 107 IWVGNLSFHTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQNKG 166 Query: 141 FGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRI------ 302 F +V +T E+A K +NGR + + R +P + I Sbjct: 167 FAYVDFAT-EDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSKKE 225 Query: 303 -----YVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 467 +VGNL ++ D+ L E F + G++ R++ DTG+ +GFGFV ++D Sbjct: 226 PSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF---PDIDTC 282 Query: 468 IAALD 482 + A++ Sbjct: 283 MKAME 287 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/61 (31%), Positives = 33/61 (54%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 ++VGNL ++ L + F Q G + ++ +T + +GFGFV I+ KA+E+ Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289 Query: 198 H 200 H Sbjct: 290 H 290
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 51.6 bits (122), Expect = 1e-06 Identities = 21/71 (29%), Positives = 43/71 (60%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 +Y+G++P+ + ++++L S G V++ ++++D TGRS+G+ F+ E A+ L Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 480 DGQSLEGRALR 512 +G L R L+ Sbjct: 80 NGYQLGSRFLK 90 Score = 46.6 bits (109), Expect = 4e-05 Identities = 20/70 (28%), Positives = 39/70 (55%) Frame = +3 Query: 18 VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMF 197 VY+G++PYD E++ L G V +++++ +T +S+G+ F+ +E + AV Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 198 HRYDVNGRLL 227 + Y + R L Sbjct: 80 NGYQLGSRFL 89
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = +3 Query: 342 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 L E+FS +G + VVYD+ TGRSRGF FV ++ +A+ +G L+GR +RV+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191 Score = 43.5 bits (101), Expect = 4e-04 Identities = 20/71 (28%), Positives = 42/71 (59%) Frame = +3 Query: 60 LAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNK 239 L ++F + G + V+Y++ T +SRGF FV I+++++A+E + +++GR + V+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 192 Query: 240 AAPRGARVERP 272 + + A P Sbjct: 193 SITKRAHTPTP 203
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/73 (34%), Positives = 44/73 (60%) Frame = +3 Query: 300 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 479 IY+GNL ++ + ++ +FSE+G VD + D +TG S+GF ++ Q A+ L Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 480 DGQSLEGRALRVN 518 +G + GRAL+++ Sbjct: 93 NGFKIGGRALKID 105 Score = 33.9 bits (76), Expect = 0.28 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Frame = +3 Query: 3 RHEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRE--TDQSRGFGFVTMSTIEEA 176 + A +Y+GNL ++ + +F + GV +VI +R+ T +S+GF ++ Sbjct: 28 KDNAYIYIGNLNRELTEGDILTVFSEYGV--PVDVILSRDENTGESQGFAYLKYEDQRST 85 Query: 177 EKAVEMFHRYDVNGRLLTVNKAAPRGAR 260 AV+ + + + GR L ++ R R Sbjct: 86 ILAVDNLNGFKIGGRALKIDHTFYRPKR 113
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/59 (38%), Positives = 38/59 (64%) Frame = +3 Query: 342 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G L+GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192 Score = 40.0 bits (92), Expect = 0.004 Identities = 16/59 (27%), Positives = 38/59 (64%) Frame = +3 Query: 60 LAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVN 236 L ++F + G + ++Y++++ +SRGF FV +++A++A E + +++GR + V+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/59 (38%), Positives = 38/59 (64%) Frame = +3 Query: 342 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 518 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G L+GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192 Score = 40.0 bits (92), Expect = 0.004 Identities = 16/59 (27%), Positives = 38/59 (64%) Frame = +3 Query: 60 LAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVN 236 L ++F + G + ++Y++++ +SRGF FV +++A++A E + +++GR + V+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,850,519 Number of Sequences: 219361 Number of extensions: 1642702 Number of successful extensions: 7105 Number of sequences better than 10.0: 491 Number of HSP's better than 10.0 without gapping: 5684 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6599 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
