ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OMP19_RHILO (Q98EC1) Outer membrane lipoprotein omp19 homolog pr... 32 0.68
2IBP1_MOUSE (P47876) Insulin-like growth factor-binding protein 1... 31 1.5
3BRCA2_RAT (O35923) Breast cancer type 2 susceptibility protein h... 30 2.0
4WNT9B_MOUSE (O35468) Protein Wnt-9b precursor (Wnt-15) (Wnt-14b) 30 2.6
5XKR4_PANTR (Q49LS4) XK-related protein 4 29 4.4
6XKR4_HUMAN (Q5GH76) XK-related protein 4 29 4.4
7VGLL2_MOUSE (Q8BGW8) Transcription cofactor vestigial-like prote... 29 4.4
8PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineraliz... 29 5.8
9YAP1_CHICK (P46936) 65 kDa Yes-associated protein (YAP65) 28 7.6
10ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblast... 28 7.6
11EPHB1_HUMAN (P54762) Ephrin type-B receptor 1 precursor (EC 2.7.... 28 7.6
12YL253_YEAST (Q06567) ABC1 family protein YLR253W 28 9.9
13ACVL1_RAT (P80203) Serine/threonine-protein kinase receptor R3 p... 28 9.9

>OMP19_RHILO (Q98EC1) Outer membrane lipoprotein omp19 homolog precursor|
          Length = 179

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -3

Query: 166 PGAPSSRRPGLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCAVVSGR 8
           P +P S  P   P  P+ T VA   P G +    S       +G W A VSG+
Sbjct: 53  PASPGSTDPSKFPTAPANTQVASLPPDGQAPAGASDLSAAAVAGVWNASVSGQ 105



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>IBP1_MOUSE (P47876) Insulin-like growth factor-binding protein 1 precursor|
           (IGFBP-1) (IBP-1) (IGF-binding protein 1)
          Length = 272

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -3

Query: 172 CSPGAPSSRRPGLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCAVVSGR 8
           C+P   ++ R GL P  P+ +   +  PAGC CC        L  GA C V + R
Sbjct: 32  CAPC--TAERLGLCPPVPA-SCPEISRPAGCGCCPTCA----LPMGAACGVATAR 79



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>BRCA2_RAT (O35923) Breast cancer type 2 susceptibility protein homolog (Fanconi|
            anemia group D1 protein homolog)
          Length = 3343

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 14/68 (20%)
 Frame = -3

Query: 175  WCSPGAPSSRRP--------------GLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLAS 38
            W +P    +R P              G  PR       +   P   SCC+P+G   PLA 
Sbjct: 3118 WSTPNKDPTREPYPASTCSASDLASGGQLPRSSPTDQQSYRSPL--SCCTPTGKSTPLAH 3175

Query: 37   GAWCAVVS 14
             AW A  S
Sbjct: 3176 SAWMAAKS 3183



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>WNT9B_MOUSE (O35468) Protein Wnt-9b precursor (Wnt-15) (Wnt-14b)|
          Length = 359

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 22/53 (41%), Positives = 27/53 (50%)
 Frame = -3

Query: 181 WIWCSPGAPSSRRPGLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCA 23
           W    PG P+    GLAPRP  G LV +E+    S C PS Y  P  +G  C+
Sbjct: 264 WAPAKPGGPAK---GLAPRP--GDLVYMEDSP--SFCRPSKY-SPGTAGRVCS 308



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>XKR4_PANTR (Q49LS4) XK-related protein 4|
          Length = 650

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 139 GLAPRPPSGTLVAVEEPAGCSCCSPSG 59
           GLAP  PSG+    EE AG  CC   G
Sbjct: 33  GLAPGLPSGSGAEDEEAAGGGCCPDGG 59



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>XKR4_HUMAN (Q5GH76) XK-related protein 4|
          Length = 650

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 139 GLAPRPPSGTLVAVEEPAGCSCCSPSG 59
           GLAP  PSG+    EE AG  CC   G
Sbjct: 33  GLAPGLPSGSGAEDEEAAGGGCCPDGG 59



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>VGLL2_MOUSE (Q8BGW8) Transcription cofactor vestigial-like protein 2 (Vgl-2)|
           (VITO1 protein)
          Length = 322

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = -3

Query: 163 GAPSSRRPGLAPRP--PSGTLVAVEEPAGCSCCSPSG-YVRP---LASGAWCAVVSGRR 5
           G P    P  AP P  P   L A  EPAG +  +P G +V P   +A     +V SG+R
Sbjct: 246 GRPGRLAPASAPAPGSPPCELAAKGEPAGSAWAAPGGPFVSPTGDVAQSLGLSVDSGKR 304



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>PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineralization protein)|
          Length = 416

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 169 SPGAPSSRRPGLAPRPPSGT 110
           SPGA     PGLAPR P+ T
Sbjct: 159 SPGAAMKTEPGLAPRTPAAT 178



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>YAP1_CHICK (P46936) 65 kDa Yes-associated protein (YAP65)|
          Length = 448

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 166 PGAPSSRRPGLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLASG 35
           PG P  ++P  A +PP+    A  +P G    +P G  +P  +G
Sbjct: 3   PGQPQPQQPPQAAQPPA-PQQAAPQPPGAGSGAPGGAAQPPGAG 45



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>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting|
           gene 1) (Rig-1)
          Length = 1366

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 121 PSGTLVAVEEPAGCSCCSPSGYVRPLAS 38
           P   +VAV EPA   C  P G+  PL +
Sbjct: 172 PGNVVVAVGEPAVMECVPPKGHPEPLVT 199



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>EPHB1_HUMAN (P54762) Ephrin type-B receptor 1 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor EPH-2) (NET) (HEK6)
           (ELK)
          Length = 984

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
 Frame = -3

Query: 175 WCSPGAPSSRRPGLAPRP-------PSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCAVV 17
           W  P    + +PG  P         P+GT  A +E  GCS C PS    P  +   C   
Sbjct: 246 WMVPIGRCTCKPGYEPENSVACKACPAGTFKASQEAEGCSHC-PSNSRSPAEASPICTCR 304

Query: 16  SG 11
           +G
Sbjct: 305 TG 306



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>YL253_YEAST (Q06567) ABC1 family protein YLR253W|
          Length = 569

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 212 RHPSMKPFSPLDLVLARRPF 153
           +HPS+K F PLD++L R  F
Sbjct: 212 QHPSLKEFIPLDVMLTRTVF 231



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>ACVL1_RAT (P80203) Serine/threonine-protein kinase receptor R3 precursor (EC|
           2.7.11.30) (SKR3) (TGF-B superfamily receptor type I)
           (TSR-I)
          Length = 504

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 127 RPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCAVV 17
           +P  G LV       C+C +P    RP+  GAWC VV
Sbjct: 26  KPSRGQLV------NCTCENPH-CKRPICQGAWCTVV 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,216,372
Number of Sequences: 219361
Number of extensions: 916089
Number of successful extensions: 3178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3175
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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