Clone Name | basd2p19 |
---|---|
Clone Library Name | barley_pub |
>gb|AY106062.1| Zea mays PCO084327 mRNA sequence Length = 1981 Score = 454 bits (229), Expect = e-124 Identities = 511/605 (84%) Strand = Plus / Plus Query: 5 ttccgagtccacaatgtgggagtctcgacgagcttgaacctgaggatccagggccacaac 64 ||||| ||||||||||| || ||||| || ||||||||| | |||| ||| |||||| Sbjct: 788 ttccgtgtccacaatgttggtgtctccacaagcttgaacttacggattcagaatcacaac 847 Query: 65 atggccatggtggagacagagggctcgtacacgatgaagcagaatttcaccaacctcgac 124 |||||| | || || ||||| || || ||||||||||||||||||||||| || |||||| Sbjct: 848 atggcccttgttgaaacagaaggttcatacacgatgaagcagaatttcactaatctcgac 907 Query: 125 atccatgtggggcagtcctactcctttctggtcaccatggaccagaatgcaagcagtgac 184 ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct: 908 atccacgtgggccagtcttactcatttctggtcactatggatcagaacgcaagcagtgat 967 Query: 185 tattacatcgtggccagccctcggttcgtgaacgagtcgctctggaccagggttaccggt 244 ||||||||||||||||| || |||| |||||||| ||||| |||||||| || |||||| Sbjct: 968 tattacatcgtggccagtgctaggtttgtgaacgaatcgctttggaccagagtcaccggt 1027 Query: 245 gttgcaattcttcactactcgaattcaaagggcaaggcatctggtccgcttcctgaccca 304 ||||||||| | || || || ||||||||||| || ||||||||||| |||||||| ||| Sbjct: 1028 gttgcaattttgcaatattcaaattcaaagggaaaagcatctggtcctcttcctgatcca 1087 Query: 305 ccgaatgatgagtacgacaaaagtttctccatgaaccaggcacggtcaatcaggatgaac 364 || ||||||||||| ||||||| ||| || |||||||||||||| || |||||||||||| Sbjct: 1088 ccaaatgatgagtatgacaaaactttttcaatgaaccaggcacgttccatcaggatgaac 1147 Query: 365 gtgaccactggtgctgctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424 |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1148 gtgagcactggtgctgctcgtccgaatcctcaaggatcatttcactatgggtctatcaat 1207 Query: 425 gtgacccaagtgtacaagttgaggaatatgccccctgttaccatcaatggcaaaaagcgg 484 |||| |||||| |||||| |||||||| || ||||||| ||||||||| || || ||| Sbjct: 1208 gtgagccaagtttacaagctgaggaatgaaccacctgttatcatcaatgggaagaaacgg 1267 Query: 485 acgacactgaacggtatctcctattcaccgcctgctactccattgaggcttgcagatctc 544 || ||||||| |||||||| ||||| || || | ||||| | ||| | |||||||| Sbjct: 1268 actacactgagtggtatctcttattccccacccgacactcctctaaggttggcagatctg 1327 Query: 545 tacgaaaagaaagaagtctacacactcgacttcccaatgatgccatctgatggaccgccg 604 ||||| ||||| || ||||||||||| |||||||| | |||||| |||||||||||| Sbjct: 1328 tacgacaagaaggatgtctacacacttgacttccctacaatgccaattgatggaccgcca 1387 Query: 605 gtgat 609 ||||| Sbjct: 1388 gtgat 1392
>gb|BT024030.1| Zea mays clone EL01N0422F01 mRNA sequence Length = 2246 Score = 377 bits (190), Expect = e-101 Identities = 436/518 (84%) Strand = Plus / Plus Query: 92 tacacgatgaagcagaatttcaccaacctcgacatccatgtggggcagtcctactccttt 151 |||||||||||||||||||| || || ||||||||||| ||| | |||| ||||| ||| Sbjct: 859 tacacgatgaagcagaattttactaatctcgacatccacgtgagccagtattactcattt 918 Query: 152 ctggtcaccatggaccagaatgcaagcagtgactattacatcgtggccagccctcggttc 211 || ||||| ||||| ||||| ||||||||||| ||||||||||||||||| | || | Sbjct: 919 ctagtcactatggatcagaacgcaagcagtgattattacatcgtggccagtgataggctt 978 Query: 212 gtgaacgagtcgctctggaccagggttaccggtgttgcaattcttcactactcgaattca 271 |||||||| | ||| |||||||| || ||||||||||||||| | || || || |||||| Sbjct: 979 gtgaacgaatagctttggaccagagtcaccggtgttgcaattttgcaatattcaaattca 1038 Query: 272 aagggcaaggcatctggtccgcttcctgacccaccgaatgatgagtacgacaaaagtttc 331 ||||| || ||||||||||| |||||||| ||||| ||||||||||| ||||||| ||| Sbjct: 1039 aagggaaaagcatctggtcctcttcctgatccaccaaatgatgagtatgacaaaactttt 1098 Query: 332 tccatgaaccaggcacggtcaatcaggatgaacgtgaccactggtgctgctcgtccgaat 391 || |||||||||||||| || |||||||||||||||| |||||||||||||||||||||| Sbjct: 1099 tcaatgaaccaggcacgttccatcaggatgaacgtgagcactggtgctgctcgtccgaat 1158 Query: 392 cctcaaggatcatttcactatgggcaaatcaacgtgacccaagtgtacaagttgaggaat 451 |||||||||||||||||||||||| ||||| |||| |||||| |||||| |||||||| Sbjct: 1159 cctcaaggatcatttcactatgggtctatcaatgtgagccaagtttacaagctgaggaat 1218 Query: 452 atgccccctgttaccatcaatggcaaaaagcggacgacactgaacggtatctcctattca 511 || ||||||| ||||||||| || || ||||| ||||||| |||||||| ||||| Sbjct: 1219 gaaccacctgttatcatcaatgggaagaaacggactacactgagtggtatctcttattcc 1278 Query: 512 ccgcctgctactccattgaggcttgcagatctctacgaaaagaaagaagtctacacactc 571 || || | ||||| | ||| | |||||||| ||||| ||||| || ||||||||||| Sbjct: 1279 ccacccgacactcctctaaggttggcagatctgtacgacaagaaggatgtctacacactt 1338 Query: 572 gacttcccaatgatgccatctgatggaccgccggtgat 609 |||||||| | |||||| |||||||||||| ||||| Sbjct: 1339 gacttccctacaatgccaattgatggaccgccagtgat 1376
>ref|NM_185313.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2223 Score = 359 bits (181), Expect = 7e-96 Identities = 499/605 (82%) Strand = Plus / Plus Query: 5 ttccgagtccacaatgtgggagtctcgacgagcttgaacctgaggatccagggccacaac 64 ||||| |||||||||||||| | ||||||||||||||| | ||||| ||| |||||| Sbjct: 749 ttccgtgtccacaatgtgggtatatcgacgagcttgaacttcaggattcagaaccacaat 808 Query: 65 atggccatggtggagacagagggctcgtacacgatgaagcagaatttcaccaacctcgac 124 ||||| | || || || ||||| || ||||| ||||||||||||||||| || || ||| Sbjct: 809 ttggcccttgttgaaactgagggatcatacacaatgaagcagaatttcacaaatcttgac 868 Query: 125 atccatgtggggcagtcctactcctttctggtcaccatggaccagaatgcaagcagtgac 184 ||||||||||| ||||||||||| ||| || |||||||||| |||||||||||||||||| Sbjct: 869 atccatgtgggacagtcctactcatttttgatcaccatggatcagaatgcaagcagtgac 928 Query: 185 tattacatcgtggccagccctcggttcgtgaacgagtcgctctggaccagggttaccggt 244 || ||||| |||||||| || |||| || || || || || ||||||| ||||||||| Sbjct: 929 tactacattgtggccagtgctaggtttgttaatgaatcactgtggaccaaagttaccggt 988 Query: 245 gttgcaattcttcactactcgaattcaaagggcaaggcatctggtccgcttcctgaccca 304 |||||||| | || || || ||||||||||| || || ||||| || |||||||| ||| Sbjct: 989 gttgcaatcttgcagtattcaaattcaaagggaaaagcttctggccctcttcctgatcca 1048 Query: 305 ccgaatgatgagtacgacaaaagtttctccatgaaccaggcacggtcaatcaggatgaac 364 || ||||||||||||||||||| |||||| |||||||||||||| || ||||||||||| Sbjct: 1049 ccaaatgatgagtacgacaaaactttctcaatgaaccaggcacgctccatcaggatgaat 1108 Query: 365 gtgaccactggtgctgctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424 |||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||| Sbjct: 1109 gtgagtactggtgctgctcgtccaaatcctcaaggttcatttcactatggctctatcaac 1168 Query: 425 gtgacccaagtgtacaagttgaggaatatgccccctgttaccatcaatggcaaaaagcgg 484 || | ||| || |||||| | |||||| || |||||||| ||||| || ||||| ||| Sbjct: 1169 gtcagccaggtttacaagctcaggaatgaaccacctgttactatcaacgggaaaaaacgg 1228 Query: 485 acgacactgaacggtatctcctattcaccgcctgctactccattgaggcttgcagatctc 544 || ||||||| |||||||| | ||| || |||| ||| || ||||| | || |||||| Sbjct: 1229 actacactgagtggtatctctttttccccacctgatacccctatgaggttggcggatctc 1288 Query: 545 tacgaaaagaaagaagtctacacactcgacttcccaatgatgccatctgatggaccgccg 604 || || ||||||| ||| ||||| || |||||||| | |||||| |||||||||||| Sbjct: 1289 tatgacaagaaaggagtgtacacgcttgacttccctactatgccaattgatggaccgcca 1348 Query: 605 gtgat 609 ||||| Sbjct: 1349 gtgat 1353
>dbj|AK102494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095A13, full insert sequence Length = 2224 Score = 359 bits (181), Expect = 7e-96 Identities = 499/605 (82%) Strand = Plus / Plus Query: 5 ttccgagtccacaatgtgggagtctcgacgagcttgaacctgaggatccagggccacaac 64 ||||| |||||||||||||| | ||||||||||||||| | ||||| ||| |||||| Sbjct: 750 ttccgtgtccacaatgtgggtatatcgacgagcttgaacttcaggattcagaaccacaat 809 Query: 65 atggccatggtggagacagagggctcgtacacgatgaagcagaatttcaccaacctcgac 124 ||||| | || || || ||||| || ||||| ||||||||||||||||| || || ||| Sbjct: 810 ttggcccttgttgaaactgagggatcatacacaatgaagcagaatttcacaaatcttgac 869 Query: 125 atccatgtggggcagtcctactcctttctggtcaccatggaccagaatgcaagcagtgac 184 ||||||||||| ||||||||||| ||| || |||||||||| |||||||||||||||||| Sbjct: 870 atccatgtgggacagtcctactcatttttgatcaccatggatcagaatgcaagcagtgac 929 Query: 185 tattacatcgtggccagccctcggttcgtgaacgagtcgctctggaccagggttaccggt 244 || ||||| |||||||| || |||| || || || || || ||||||| ||||||||| Sbjct: 930 tactacattgtggccagtgctaggtttgttaatgaatcactgtggaccaaagttaccggt 989 Query: 245 gttgcaattcttcactactcgaattcaaagggcaaggcatctggtccgcttcctgaccca 304 |||||||| | || || || ||||||||||| || || ||||| || |||||||| ||| Sbjct: 990 gttgcaatcttgcagtattcaaattcaaagggaaaagcttctggccctcttcctgatcca 1049 Query: 305 ccgaatgatgagtacgacaaaagtttctccatgaaccaggcacggtcaatcaggatgaac 364 || ||||||||||||||||||| |||||| |||||||||||||| || ||||||||||| Sbjct: 1050 ccaaatgatgagtacgacaaaactttctcaatgaaccaggcacgctccatcaggatgaat 1109 Query: 365 gtgaccactggtgctgctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424 |||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||| Sbjct: 1110 gtgagtactggtgctgctcgtccaaatcctcaaggttcatttcactatggctctatcaac 1169 Query: 425 gtgacccaagtgtacaagttgaggaatatgccccctgttaccatcaatggcaaaaagcgg 484 || | ||| || |||||| | |||||| || |||||||| ||||| || ||||| ||| Sbjct: 1170 gtcagccaggtttacaagctcaggaatgaaccacctgttactatcaacgggaaaaaacgg 1229 Query: 485 acgacactgaacggtatctcctattcaccgcctgctactccattgaggcttgcagatctc 544 || ||||||| |||||||| | ||| || |||| ||| || ||||| | || |||||| Sbjct: 1230 actacactgagtggtatctctttttccccacctgatacccctatgaggttggcggatctc 1289 Query: 545 tacgaaaagaaagaagtctacacactcgacttcccaatgatgccatctgatggaccgccg 604 || || ||||||| ||| ||||| || |||||||| | |||||| |||||||||||| Sbjct: 1290 tatgacaagaaaggagtgtacacgcttgacttccctactatgccaattgatggaccgcca 1349 Query: 605 gtgat 609 ||||| Sbjct: 1350 gtgat 1354
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 250 bits (126), Expect = 5e-63 Identities = 297/354 (83%) Strand = Plus / Minus Query: 5 ttccgagtccacaatgtgggagtctcgacgagcttgaacctgaggatccagggccacaac 64 ||||| |||||||||||||| | ||||||||||||||| | ||||| ||| |||||| Sbjct: 298942 ttccgtgtccacaatgtgggtatatcgacgagcttgaacttcaggattcagaaccacaat 298883 Query: 65 atggccatggtggagacagagggctcgtacacgatgaagcagaatttcaccaacctcgac 124 ||||| | || || || ||||| || ||||| ||||||||||||||||| || || ||| Sbjct: 298882 ttggcccttgttgaaactgagggatcatacacaatgaagcagaatttcacaaatcttgac 298823 Query: 125 atccatgtggggcagtcctactcctttctggtcaccatggaccagaatgcaagcagtgac 184 ||||||||||| ||||||||||| ||| || |||||||||| |||||||||||||||||| Sbjct: 298822 atccatgtgggacagtcctactcatttttgatcaccatggatcagaatgcaagcagtgac 298763 Query: 185 tattacatcgtggccagccctcggttcgtgaacgagtcgctctggaccagggttaccggt 244 || ||||| |||||||| || |||| || || || || || ||||||| ||||||||| Sbjct: 298762 tactacattgtggccagtgctaggtttgttaatgaatcactgtggaccaaagttaccggt 298703 Query: 245 gttgcaattcttcactactcgaattcaaagggcaaggcatctggtccgcttcctgaccca 304 |||||||| | || || || ||||||||||| || || ||||| || |||||||| ||| Sbjct: 298702 gttgcaatcttgcagtattcaaattcaaagggaaaagcttctggccctcttcctgatcca 298643 Query: 305 ccgaatgatgagtacgacaaaagtttctccatgaaccaggcacggtcaatcagg 358 || ||||||||||||||||||| |||||| |||||||||||||| || |||||| Sbjct: 298642 ccaaatgatgagtacgacaaaactttctcaatgaaccaggcacgctccatcagg 298589 Score = 117 bits (59), Expect = 5e-23 Identities = 206/255 (80%) Strand = Plus / Minus Query: 355 caggatgaacgtgaccactggtgctgctcgtccgaatcctcaaggatcatttcactatgg 414 ||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 297880 caggatgaatgtgagtactggtgctgctcgtccaaatcctcaaggttcatttcactatgg 297821 Query: 415 gcaaatcaacgtgacccaagtgtacaagttgaggaatatgccccctgttaccatcaatgg 474 |||||||| | ||| || |||||| | |||||| || |||||||| ||||| || Sbjct: 297820 ctctatcaacgtcagccaggtttacaagctcaggaatgaaccacctgttactatcaacgg 297761 Query: 475 caaaaagcggacgacactgaacggtatctcctattcaccgcctgctactccattgaggct 534 ||||| ||||| ||||||| |||||||| | ||| || |||| ||| || ||||| | Sbjct: 297760 gaaaaaacggactacactgagtggtatctctttttccccacctgatacccctatgaggtt 297701 Query: 535 tgcagatctctacgaaaagaaagaagtctacacactcgacttcccaatgatgccatctga 594 || |||||||| || ||||||| ||| ||||| || |||||||| | |||||| ||| Sbjct: 297700 ggcggatctctatgacaagaaaggagtgtacacgcttgacttccctactatgccaattga 297641 Query: 595 tggaccgccggtgat 609 ||||||||| ||||| Sbjct: 297640 tggaccgccagtgat 297626
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 250 bits (126), Expect = 5e-63 Identities = 297/354 (83%) Strand = Plus / Minus Query: 5 ttccgagtccacaatgtgggagtctcgacgagcttgaacctgaggatccagggccacaac 64 ||||| |||||||||||||| | ||||||||||||||| | ||||| ||| |||||| Sbjct: 8895 ttccgtgtccacaatgtgggtatatcgacgagcttgaacttcaggattcagaaccacaat 8836 Query: 65 atggccatggtggagacagagggctcgtacacgatgaagcagaatttcaccaacctcgac 124 ||||| | || || || ||||| || ||||| ||||||||||||||||| || || ||| Sbjct: 8835 ttggcccttgttgaaactgagggatcatacacaatgaagcagaatttcacaaatcttgac 8776 Query: 125 atccatgtggggcagtcctactcctttctggtcaccatggaccagaatgcaagcagtgac 184 ||||||||||| ||||||||||| ||| || |||||||||| |||||||||||||||||| Sbjct: 8775 atccatgtgggacagtcctactcatttttgatcaccatggatcagaatgcaagcagtgac 8716 Query: 185 tattacatcgtggccagccctcggttcgtgaacgagtcgctctggaccagggttaccggt 244 || ||||| |||||||| || |||| || || || || || ||||||| ||||||||| Sbjct: 8715 tactacattgtggccagtgctaggtttgttaatgaatcactgtggaccaaagttaccggt 8656 Query: 245 gttgcaattcttcactactcgaattcaaagggcaaggcatctggtccgcttcctgaccca 304 |||||||| | || || || ||||||||||| || || ||||| || |||||||| ||| Sbjct: 8655 gttgcaatcttgcagtattcaaattcaaagggaaaagcttctggccctcttcctgatcca 8596 Query: 305 ccgaatgatgagtacgacaaaagtttctccatgaaccaggcacggtcaatcagg 358 || ||||||||||||||||||| |||||| |||||||||||||| || |||||| Sbjct: 8595 ccaaatgatgagtacgacaaaactttctcaatgaaccaggcacgctccatcagg 8542 Score = 117 bits (59), Expect = 5e-23 Identities = 206/255 (80%) Strand = Plus / Minus Query: 355 caggatgaacgtgaccactggtgctgctcgtccgaatcctcaaggatcatttcactatgg 414 ||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 7833 caggatgaatgtgagtactggtgctgctcgtccaaatcctcaaggttcatttcactatgg 7774 Query: 415 gcaaatcaacgtgacccaagtgtacaagttgaggaatatgccccctgttaccatcaatgg 474 |||||||| | ||| || |||||| | |||||| || |||||||| ||||| || Sbjct: 7773 ctctatcaacgtcagccaggtttacaagctcaggaatgaaccacctgttactatcaacgg 7714 Query: 475 caaaaagcggacgacactgaacggtatctcctattcaccgcctgctactccattgaggct 534 ||||| ||||| ||||||| |||||||| | ||| || |||| ||| || ||||| | Sbjct: 7713 gaaaaaacggactacactgagtggtatctctttttccccacctgatacccctatgaggtt 7654 Query: 535 tgcagatctctacgaaaagaaagaagtctacacactcgacttcccaatgatgccatctga 594 || |||||||| || ||||||| ||| ||||| || |||||||| | |||||| ||| Sbjct: 7653 ggcggatctctatgacaagaaaggagtgtacacgcttgacttccctactatgccaattga 7594 Query: 595 tggaccgccggtgat 609 ||||||||| ||||| Sbjct: 7593 tggaccgccagtgat 7579
>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0075G19 Length = 163558 Score = 117 bits (59), Expect = 5e-23 Identities = 206/255 (80%) Strand = Plus / Minus Query: 355 caggatgaacgtgaccactggtgctgctcgtccgaatcctcaaggatcatttcactatgg 414 ||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 162776 caggatgaatgtgagtactggtgctgctcgtccaaatcctcaaggttcatttcactatgg 162717 Query: 415 gcaaatcaacgtgacccaagtgtacaagttgaggaatatgccccctgttaccatcaatgg 474 |||||||| | ||| || |||||| | |||||| || |||||||| ||||| || Sbjct: 162716 ctctatcaacgtcagccaggtttacaagctcaggaatgaaccacctgttactatcaacgg 162657 Query: 475 caaaaagcggacgacactgaacggtatctcctattcaccgcctgctactccattgaggct 534 ||||| ||||| ||||||| |||||||| | ||| || |||| ||| || ||||| | Sbjct: 162656 gaaaaaacggactacactgagtggtatctctttttccccacctgatacccctatgaggtt 162597 Query: 535 tgcagatctctacgaaaagaaagaagtctacacactcgacttcccaatgatgccatctga 594 || |||||||| || ||||||| ||| ||||| || |||||||| | |||||| ||| Sbjct: 162596 ggcggatctctatgacaagaaaggagtgtacacgcttgacttccctactatgccaattga 162537 Query: 595 tggaccgccggtgat 609 ||||||||| ||||| Sbjct: 162536 tggaccgccagtgat 162522 Score = 83.8 bits (42), Expect = 7e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 293 cttcctgacccaccgaatgatgagtacgacaaaagtttctccatgaaccaggcacggtca 352 |||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||| || Sbjct: 163550 cttcctgatccaccaaatgatgagtacgacaaaactttctcaatgaaccaggcacgctcc 163491 Query: 353 atcagg 358 |||||| Sbjct: 163490 atcagg 163485
>ref|NM_197271.1| Oryza sativa (japonica cultivar-group) putative ascorbate oxidase (OSJNBb0015K05.9), mRNA Length = 1722 Score = 101 bits (51), Expect = 3e-18 Identities = 120/143 (83%) Strand = Plus / Plus Query: 29 tcgacgagcttgaacctgaggatccagggccacaacatggccatggtggagacagagggc 88 ||||||||| | ||| | ||||||||||| |||||||||| |||||||||| |||||| Sbjct: 736 tcgacgagcctcaacttcaggatccaggggcacaacatggtgctggtggagacggagggc 795 Query: 89 tcgtacacgatgaagcagaatttcaccaacctcgacatccatgtggggcagtcctactcc 148 || ||||||| | ||||||| | ||||||||| ||| |||| || || |||||||||||| Sbjct: 796 tcctacacgacgcagcagaactacaccaacctggacgtccacgtcggccagtcctactcc 855 Query: 149 tttctggtcaccatggaccagaa 171 || || ||||||| |||||||| Sbjct: 856 ttcctcgtcaccaccgaccagaa 878
>gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 genomic sequence, complete sequence Length = 123292 Score = 101 bits (51), Expect = 3e-18 Identities = 120/143 (83%) Strand = Plus / Minus Query: 29 tcgacgagcttgaacctgaggatccagggccacaacatggccatggtggagacagagggc 88 ||||||||| | ||| | ||||||||||| |||||||||| |||||||||| |||||| Sbjct: 62593 tcgacgagcctcaacttcaggatccaggggcacaacatggtgctggtggagacggagggc 62534 Query: 89 tcgtacacgatgaagcagaatttcaccaacctcgacatccatgtggggcagtcctactcc 148 || ||||||| | ||||||| | ||||||||| ||| |||| || || |||||||||||| Sbjct: 62533 tcctacacgacgcagcagaactacaccaacctggacgtccacgtcggccagtcctactcc 62474 Query: 149 tttctggtcaccatggaccagaa 171 || || ||||||| |||||||| Sbjct: 62473 ttcctcgtcaccaccgaccagaa 62451
>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete sequence Length = 151991 Score = 101 bits (51), Expect = 3e-18 Identities = 120/143 (83%) Strand = Plus / Minus Query: 29 tcgacgagcttgaacctgaggatccagggccacaacatggccatggtggagacagagggc 88 ||||||||| | ||| | ||||||||||| |||||||||| |||||||||| |||||| Sbjct: 146243 tcgacgagcctcaacttcaggatccaggggcacaacatggtgctggtggagacggagggc 146184 Query: 89 tcgtacacgatgaagcagaatttcaccaacctcgacatccatgtggggcagtcctactcc 148 || ||||||| | ||||||| | ||||||||| ||| |||| || || |||||||||||| Sbjct: 146183 tcctacacgacgcagcagaactacaccaacctggacgtccacgtcggccagtcctactcc 146124 Query: 149 tttctggtcaccatggaccagaa 171 || || ||||||| |||||||| Sbjct: 146123 ttcctcgtcaccaccgaccagaa 146101
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 101 bits (51), Expect = 3e-18 Identities = 120/143 (83%) Strand = Plus / Plus Query: 29 tcgacgagcttgaacctgaggatccagggccacaacatggccatggtggagacagagggc 88 ||||||||| | ||| | ||||||||||| |||||||||| |||||||||| |||||| Sbjct: 18932448 tcgacgagcctcaacttcaggatccaggggcacaacatggtgctggtggagacggagggc 18932507 Query: 89 tcgtacacgatgaagcagaatttcaccaacctcgacatccatgtggggcagtcctactcc 148 || ||||||| | ||||||| | ||||||||| ||| |||| || || |||||||||||| Sbjct: 18932508 tcctacacgacgcagcagaactacaccaacctggacgtccacgtcggccagtcctactcc 18932567 Query: 149 tttctggtcaccatggaccagaa 171 || || ||||||| |||||||| Sbjct: 18932568 ttcctcgtcaccaccgaccagaa 18932590
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 101 bits (51), Expect = 3e-18 Identities = 120/143 (83%) Strand = Plus / Plus Query: 29 tcgacgagcttgaacctgaggatccagggccacaacatggccatggtggagacagagggc 88 ||||||||| | ||| | ||||||||||| |||||||||| |||||||||| |||||| Sbjct: 18943702 tcgacgagcctcaacttcaggatccaggggcacaacatggtgctggtggagacggagggc 18943761 Query: 89 tcgtacacgatgaagcagaatttcaccaacctcgacatccatgtggggcagtcctactcc 148 || ||||||| | ||||||| | ||||||||| ||| |||| || || |||||||||||| Sbjct: 18943762 tcctacacgacgcagcagaactacaccaacctggacgtccacgtcggccagtcctactcc 18943821 Query: 149 tttctggtcaccatggaccagaa 171 || || ||||||| |||||||| Sbjct: 18943822 ttcctcgtcaccaccgaccagaa 18943844
>ref|XM_480151.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1803 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Plus Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161 ||||||||| |||||| || ||||||||||| || ||||| ||||| || |||| |||| Sbjct: 788 agcagaattacaccaatcttgacatccatgttggacagtcatactctttcttggtgacca 847 Query: 162 tggaccagaatgcaagcagtgactattacatcgtggccagccctcggttcgt 213 ||||||| |||||||||| |||||| ||||| ||||| ||||| ||||||| Sbjct: 848 tggaccaaaatgcaagcactgactactacattgtggcgagcccaaggttcgt 899
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Minus Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161 ||||||||| |||||| || ||||||||||| || ||||| ||||| || |||| |||| Sbjct: 3115662 agcagaattacaccaatcttgacatccatgttggacagtcatactctttcttggtgacca 3115603 Query: 162 tggaccagaatgcaagcagtgactattacatcgtggccagccctcggttcgt 213 ||||||| |||||||||| |||||| ||||| ||||| ||||| ||||||| Sbjct: 3115602 tggaccaaaatgcaagcactgactactacattgtggcgagcccaaggttcgt 3115551
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Minus Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161 ||||||||| |||||| || ||||||||||| || ||||| ||||| || |||| |||| Sbjct: 166385 agcagaattacaccaatcttgacatccatgttggacagtcatactctttcttggtgacca 166326 Query: 162 tggaccagaatgcaagcagtgactattacatcgtggccagccctcggttcgt 213 ||||||| |||||||||| |||||| ||||| ||||| ||||| ||||||| Sbjct: 166325 tggaccaaaatgcaagcactgactactacattgtggcgagcccaaggttcgt 166274
>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1066_B03 Length = 115339 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Minus Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161 ||||||||| |||||| || ||||||||||| || ||||| ||||| || |||| |||| Sbjct: 75146 agcagaattacaccaatcttgacatccatgttggacagtcatactctttcttggtgacca 75087 Query: 162 tggaccagaatgcaagcagtgactattacatcgtggccagccctcggttcgt 213 ||||||| |||||||||| |||||| ||||| ||||| ||||| ||||||| Sbjct: 75086 tggaccaaaatgcaagcactgactactacattgtggcgagcccaaggttcgt 75035
>ref|XM_549803.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2162 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161 ||||||| | ||||||| | ||||||||||| || |||||||||||||| || |||||| Sbjct: 845 agcagaactacaccaacatggacatccatgtcggccagtcctactccttccttctcacca 904 Query: 162 tggaccagaa 171 |||||||||| Sbjct: 905 tggaccagaa 914
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161 ||||||| | ||||||| | ||||||||||| || |||||||||||||| || |||||| Sbjct: 12564 agcagaactacaccaacatggacatccatgtcggccagtcctactccttccttctcacca 12623 Query: 162 tggaccagaa 171 |||||||||| Sbjct: 12624 tggaccagaa 12633
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672D08 Length = 173729 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161 ||||||| | ||||||| | ||||||||||| || |||||||||||||| || |||||| Sbjct: 10366 agcagaactacaccaacatggacatccatgtcggccagtcctactccttccttctcacca 10425 Query: 162 tggaccagaa 171 |||||||||| Sbjct: 10426 tggaccagaa 10435
>dbj|AK101455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040A20, full insert sequence Length = 2162 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161 ||||||| | ||||||| | ||||||||||| || |||||||||||||| || |||||| Sbjct: 845 agcagaactacaccaacatggacatccatgtcggccagtcctactccttccttctcacca 904 Query: 162 tggaccagaa 171 |||||||||| Sbjct: 905 tggaccagaa 914
>dbj|AP008219.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, fosmid clone:OSJNOa264G09 Length = 31687 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161 ||||||| | ||||||| | ||||||||||| || |||||||||||||| || |||||| Sbjct: 12564 agcagaactacaccaacatggacatccatgtcggccagtcctactccttccttctcacca 12623 Query: 162 tggaccagaa 171 |||||||||| Sbjct: 12624 tggaccagaa 12633
>gb|AY105556.1| Zea mays PCO105129 mRNA sequence Length = 752 Score = 60.0 bits (30), Expect = 1e-05 Identities = 135/170 (79%) Strand = Plus / Plus Query: 2 cgcttccgagtccacaatgtgggagtctcgacgagcttgaacctgaggatccagggccac 61 |||||||| |||||||| || || ||||| || ||| | ||| | ||||||||| |||| Sbjct: 566 cgcttccgcgtccacaacgttggcgtctcaacaagcctcaacttcaggatccagaaccac 625 Query: 62 aacatggccatggtggagacagagggctcgtacacgatgaagcagaatttcaccaacctc 121 |||||| |||||||||| || || | ||||||| ||||||| | |||| |||| Sbjct: 626 aacatgcgtctggtggagaccgaagggacctacacgaaccagcagaactacaccgacctg 685 Query: 122 gacatccatgtggggcagtcctactcctttctggtcaccatggaccagaa 171 |||||||| ||||| ||||||||||| || |||| |||||||| ||||| Sbjct: 686 gacatccacgtgggacagtcctactctttcttggtgaccatggatcagaa 735
>ref|NM_118656.3| Arabidopsis thaliana SKS1 (SKU5 SIMILAR 1); copper ion binding AT4G25240 (SKS1) mRNA, complete cds Length = 2157 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaat 420 |||||||| ||||| || ||||||||||| ||||| ||||| Sbjct: 1188 gctcgtccaaatccgcagggatcatttcattatggtcaaat 1228
>ref|NM_124527.3| Arabidopsis thaliana copper ion binding AT5G51480 mRNA, complete cds Length = 2263 Score = 42.1 bits (21), Expect = 2.3 Identities = 39/45 (86%) Strand = Plus / Plus Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424 |||||||| ||||| || |||||||||||||| || || |||||| Sbjct: 1237 gctcgtccaaatccgcagggatcatttcactacggacagatcaac 1281
>ref|XM_446826.1| Candida glabrata CBS138, CAGL0H00638g partial mRNA Length = 1755 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 441 agttgaggaatatgccccctg 461 ||||||||||||||||||||| Sbjct: 431 agttgaggaatatgccccctg 451
>ref|XM_504499.1| Yarrowia lipolytica CLIB122, YALI0E28270g predicted mRNA Length = 873 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 gtgaacgagtcgctctggacc 232 ||||||||||||||||||||| Sbjct: 710 gtgaacgagtcgctctggacc 690
>gb|AY091230.1| Arabidopsis thaliana putative pollen-specific protein precursor (At4g25240) mRNA, complete cds Length = 1801 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaat 420 |||||||| ||||| || ||||||||||| ||||| ||||| Sbjct: 1051 gctcgtccaaatccgcagggatcatttcattatggtcaaat 1091
>gb|AY074379.1| Arabidopsis thaliana putative Pollen-specific protein precursor (At4g25240) mRNA, complete cds Length = 2173 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaat 420 |||||||| ||||| || ||||||||||| ||||| ||||| Sbjct: 1188 gctcgtccaaatccgcagggatcatttcattatggtcaaat 1228
>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence Length = 1050361 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 441 agttgaggaatatgccccctg 461 ||||||||||||||||||||| Sbjct: 62339 agttgaggaatatgccccctg 62319
>emb|AL161563.2|ATCHRIV63 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 63 Length = 198777 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaat 420 |||||||| ||||| || ||||||||||| ||||| ||||| Sbjct: 14832 gctcgtccaaatccgcagggatcatttcattatggtcaaat 14872
>emb|AL035396.1|ATF24A6 Arabidopsis thaliana DNA chromosome 4, BAC clone F24A6 (ESSAII project) Length = 92073 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaat 420 |||||||| ||||| || ||||||||||| ||||| ||||| Sbjct: 65020 gctcgtccaaatccgcagggatcatttcattatggtcaaat 65060
>emb|AJ292743.1|PCR292743 Petroselinum crispum mRNA for common plant regulatory factor 5 (cprf5 gene) Length = 1410 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 ggtcaatcaggatgaacgtga 368 ||||||||||||||||||||| Sbjct: 765 ggtcaatcaggatgaacgtga 785
>gb|AC155228.11| Medicago truncatula clone mth2-139i19, complete sequence Length = 112322 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 149 tttctggtcaccatggaccagaatgcaag 177 |||||||| |||||||| ||||||||||| Sbjct: 40720 tttctggtaaccatggatcagaatgcaag 40748
>emb|BX830464.1|CNS0A1MM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB83ZF06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2205 Score = 42.1 bits (21), Expect = 2.3 Identities = 39/45 (86%) Strand = Plus / Plus Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424 |||||||| ||||| || |||||||||||||| || || |||||| Sbjct: 1224 gctcgtccaaatccgcagggatcatttcactacggacagatcaac 1268
>gb|BT004990.1| Arabidopsis thaliana clone U20700 unknown protein (At5g51480) mRNA, complete cds Length = 1810 Score = 42.1 bits (21), Expect = 2.3 Identities = 39/45 (86%) Strand = Plus / Plus Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424 |||||||| ||||| || |||||||||||||| || || |||||| Sbjct: 1048 gctcgtccaaatccgcagggatcatttcactacggacagatcaac 1092
>gb|BT004129.1| Arabidopsis thaliana clone RAFL15-06-D22 (R20700) unknown protein (At5g51480) mRNA, complete cds Length = 2279 Score = 42.1 bits (21), Expect = 2.3 Identities = 39/45 (86%) Strand = Plus / Plus Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424 |||||||| ||||| || |||||||||||||| || || |||||| Sbjct: 1237 gctcgtccaaatccgcagggatcatttcactacggacagatcaac 1281
>dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17N15 Length = 81293 Score = 42.1 bits (21), Expect = 2.3 Identities = 39/45 (86%) Strand = Plus / Plus Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424 |||||||| ||||| || |||||||||||||| || || |||||| Sbjct: 10713 gctcgtccaaatccgcagggatcatttcactacggacagatcaac 10757
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 gtgaacgagtcgctctggacc 232 ||||||||||||||||||||| Sbjct: 3342341 gtgaacgagtcgctctggacc 3342361
>emb|AL353681.8| Human DNA sequence from clone RP1-158P9 on chromosome 1 Contains a novel gene and a pseudogene, complete sequence Length = 113539 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 agggcaaggcatctggtccgcttc 296 ||||| |||||||||||||||||| Sbjct: 10085 agggccaggcatctggtccgcttc 10062
>emb|AL670005.1|NCB11H24 Neurospora crassa DNA linkage group V BAC clone B11H24 Length = 72580 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggccatggtggagacagag 85 |||||||||||||||||||| Sbjct: 71385 tggccatggtggagacagag 71366
>emb|AL513444.1|NCB11N2 Neurospora crassa DNA linkage group V BAC contig B11N2 Length = 99360 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 tggccatggtggagacagag 85 |||||||||||||||||||| Sbjct: 92850 tggccatggtggagacagag 92869
>dbj|AK140846.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130044D02 product:unclassifiable, full insert sequence Length = 3523 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 gaaaagaaagaagtctacac 567 |||||||||||||||||||| Sbjct: 202 gaaaagaaagaagtctacac 183
>gb|AC133510.3| Mus musculus BAC clone RP23-409B11 from 8, complete sequence Length = 195449 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 gaaaagaaagaagtctacac 567 |||||||||||||||||||| Sbjct: 140743 gaaaagaaagaagtctacac 140762 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,205,406 Number of Sequences: 3902068 Number of extensions: 5205406 Number of successful extensions: 79581 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79349 Number of HSP's gapped (non-prelim): 223 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)