Clone Information

BLAST Search Result

Clone Name	basd2p07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CAO_ARATH (Q9MBA1) Chlorophyllide a oxygenase, chloroplast precu...	175	9e-44
2	A1AG2_HUMAN (P19652) Alpha-1-acid glycoprotein 2 precursor (AGP ...	36	0.081
3	LRC17_MOUSE (Q9CXD9) Leucine-rich repeat-containing protein 17 p...	34	0.31
4	LRC17_HUMAN (Q8N6Y2) Leucine-rich repeat-containing protein 17 p...	33	0.68
5	SYV_STAHJ (Q4L703) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...	33	0.89
6	PUMA_PARUN (O61308) 227 kDa spindle- and centromere-associated p...	33	0.89
7	DHB4_RAT (P97852) Peroxisomal multifunctional enzyme type 2 (MFE...	32	1.2
8	NUF1_YEAST (P32380) Protein NUF1 (Spindle poly body spacer prote...	32	1.5
9	SYV_STAES (Q8CS83) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...	32	2.0
10	SYV_STAEQ (Q5HNN9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...	32	2.0
11	DHB4_HUMAN (P51659) Peroxisomal multifunctional enzyme type 2 (M...	32	2.0
12	TPM_METEN (Q25456) Tropomyosin (Allergen Met e 1) (Met e I)	31	2.6
13	IFNB2_BOVIN (P01576) Interferon beta-2 precursor	31	3.4
14	MYH6_MESAU (P13539) Myosin heavy chain, cardiac muscle alpha iso...	31	3.4
15	MYH6_HUMAN (P13533) Myosin heavy chain, cardiac muscle alpha iso...	31	3.4
16	MYH6_RAT (P02563) Myosin heavy chain, cardiac muscle alpha isofo...	31	3.4
17	MYH6_MOUSE (Q02566) Myosin heavy chain, cardiac muscle alpha iso...	31	3.4
18	MYH6_RABIT (P04460) Myosin heavy chain, cardiac muscle alpha iso...	31	3.4
19	RGPD8_HUMAN (Q99666) RANBP2-like and GRIP domain-containing prot...	30	4.4
20	MYH3_RAT (P12847) Myosin heavy chain, fast skeletal muscle, embr...	30	4.4
21	TOLB_VIBVY (Q7MJ87) Protein tolB precursor	30	5.8
22	MYSS_RABIT (P02562) Myosin heavy chain, skeletal muscle (Fragments)	30	5.8
23	LPXA_AGRT5 (Q8UFL3) Acyl-[acyl-carrier-protein]--UDP-N-acetylglu...	30	5.8
24	MYH3_CHICK (P02565) Myosin heavy chain, fast skeletal muscle, em...	30	5.8
25	TOLB_VIBVU (Q8DAM3) Protein tolB precursor	30	5.8
26	MYH7_RAT (P02564) Myosin heavy chain, cardiac muscle beta isofor...	30	7.6
27	MYH7_PIG (P79293) Myosin heavy chain, cardiac muscle beta isofor...	30	7.6
28	MYH7_HUMAN (P12883) Myosin heavy chain, cardiac muscle beta isof...	30	7.6
29	MYH1_MOUSE (Q5SX40) Myosin-1 (Myosin heavy chain, skeletal muscl...	30	7.6
30	MYSC_CHICK (P29616) Myosin heavy chain, cardiac muscle isoform (...	30	7.6
31	RBP22_HUMAN (Q53T03) Ran-binding protein 2-like 2 (RanBP2L2)	30	7.6
32	RBP23_HUMAN (O14715) Ran-binding protein 2-like 3 (RanBP2L3) (Fr...	30	7.6
33	MYSS_CHICK (P13538) Myosin heavy chain, skeletal muscle, adult	30	7.6
34	MYH8_HUMAN (P13535) Myosin-8 (Myosin heavy chain, skeletal muscl...	30	7.6
35	MYH4_RABIT (Q28641) Myosin-4 (Myosin heavy chain, skeletal muscl...	30	7.6
36	MYH4_HUMAN (Q9Y623) Myosin-4 (Myosin heavy chain, skeletal muscl...	30	7.6
37	MYH1_HUMAN (P12882) Myosin-1 (Myosin heavy chain, skeletal muscl...	30	7.6
38	MYH2_HUMAN (Q9UKX2) Myosin heavy chain, skeletal muscle, adult 2...	30	7.6
39	MYH7_RABIT (P04461) Myosin heavy chain, cardiac muscle beta isof...	30	7.6
40	A1AG1_HUMAN (P02763) Alpha-1-acid glycoprotein 1 precursor (AGP ...	29	9.9
41	DHB4_MOUSE (P51660) Peroxisomal multifunctional enzyme type 2 (M...	29	9.9
42	MYH3_HUMAN (P11055) Myosin heavy chain, fast skeletal muscle, em...	29	9.9
43	RBP26_HUMAN (Q68DN6) Ran-binding protein 2-like 6 (RanBP2L6)	29	9.9

>CAO_ARATH (Q9MBA1) Chlorophyllide a oxygenase, chloroplast precursor (EC|
           1.-.-.-) (Chlorophyll a oxygenase) (Chlorophyll b
           synthase)
          Length = 536

 Score =  175 bits (444), Expect = 9e-44
 Identities = 88/148 (59%), Positives = 117/148 (79%)
 Frame = +2

Query: 98  LSRKGVGRYGGIKVYAVLRDDSADYLKDNHHWEALFHVDDPGPRVPIEKGQYLEAKQALD 277
           LSRK  G  G  +V+AV  D+S   ++    W  LF V+DP  + P  KG++L+  QA++
Sbjct: 25  LSRKK-GVKGEFRVFAVFGDESG-LVEKKSQWRPLFDVEDPRSKAPPYKGKFLDVNQAIE 82

Query: 278 VVRFDIQYCDWRARQDLLTIMVLHNKVVEVLNPLARDFKSVGTLRKDLDGLQEELAKAHN 457
           V RFDIQY DWRARQDLLTIM+LH+KVV+VLNPLAR++KS+GT++K+L GLQEEL+KAH 
Sbjct: 83  VARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQ 142

Query: 458 QLYLSESRVSSALDKLAQMETVVNERLL 541
           Q+++SE+RVS+ALDKLA ME +VN+RLL
Sbjct: 143 QVHISEARVSTALDKLAHMEELVNDRLL 170

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>A1AG2_HUMAN (P19652) Alpha-1-acid glycoprotein 2 precursor (AGP 2)|
           (Orosomucoid-2) (OMD 2)
          Length = 201

 Score = 36.2 bits (82), Expect = 0.081
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
 Frame = +2

Query: 113 VGRYGGIKVYAV----LRDDSA----DYLKDNHHWEALFHVDDPGPRVPIEKGQYLEAKQ 268
           V RY G + +      LRD        YL D  +W   F+ D P      + G++ EA  
Sbjct: 106 VSRYEGGREHVAHLLFLRDTKTLMFGSYLDDEKNWGLSFYADKP-ETTKEQLGEFYEALD 164

Query: 269 ALDVVRFDIQYCDWR 313
            L + R D+ Y DW+
Sbjct: 165 CLCIPRSDVMYTDWK 179

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>LRC17_MOUSE (Q9CXD9) Leucine-rich repeat-containing protein 17 precursor|
          Length = 443

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
 Frame = +2

Query: 224 PRVPIEKGQYLEAKQALDVVRFDIQYC--DWRARQDLLTIMVLHNKVVEVLNPLARDFKS 397
           P +P +   YL  K  LD     + Y   DW   QDLL +++  NK+  + N +   FK 
Sbjct: 52  PGLPCDVYTYLHEKY-LDCQERKLVYVLPDWP--QDLLHMLLARNKIRVLKNNMFAKFKR 108

Query: 398 VGTLRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVVNERLL 541
           +    K LD  Q E++K  ++ +   +++++ L +  Q++ +  E  +
Sbjct: 109 L----KSLDLQQNEISKIESEAFFGLNKLTTLLLQHNQIKVLTEEAFI 152

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>LRC17_HUMAN (Q8N6Y2) Leucine-rich repeat-containing protein 17 precursor|
           (p37NB)
          Length = 441

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 26/103 (25%), Positives = 50/103 (48%)
 Frame = +2

Query: 224 PRVPIEKGQYLEAKQALDVVRFDIQYCDWRARQDLLTIMVLHNKVVEVLNPLARDFKSVG 403
           P +P +   YL  K  LD     + Y      QDLL +++  NK+  + N +   FK + 
Sbjct: 50  PGLPCDVYTYLHEKY-LDCQERKLVYVLPGWPQDLLHMLLARNKIRTLKNNMFSKFKKL- 107

Query: 404 TLRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVVNE 532
              K LD  Q E++K  ++ +   +++++ L +  Q++ +  E
Sbjct: 108 ---KSLDLQQNEISKIESEAFFGLNKLTTLLLQHNQIKVLTEE 147

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>SYV_STAHJ (Q4L703) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 876

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 23/69 (33%), Positives = 37/69 (53%)
 Frame = +2

Query: 329 LTIMVLHNKVVEVLNPLARDFKSVGTLRKDLDGLQEELAKAHNQLYLSESRVSSALDKLA 508
           +T +V+  KVV  L  L    K +  L K+LD LQ+EL +   +L  +E+ V+ A +K+ 
Sbjct: 792 MTAVVIAGKVVLPLEGLIDMDKEIARLEKELDKLQKELDRVDKKL-SNENFVNKAPEKVI 850

Query: 509 QMETVVNER 535
             E    +R
Sbjct: 851 NEEKEKQQR 859

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>PUMA_PARUN (O61308) 227 kDa spindle- and centromere-associated protein (PUMA1)|
          Length = 1955

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 26/137 (18%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
 Frame = +2

Query: 131  IKVYAVLRDDSADYLKDNHHWEALFHVDDPGPRVPIEKGQYLEAKQALDVVRFDIQYCDW 310
            +K  + + D+     +D   W+     ++   ++   +    EAK    V+R +    +W
Sbjct: 910  LKYQSEVEDERDQRSRDADSWKVTS--EELRSKISFMEKMLEEAKHRETVLREEAT--EW 965

Query: 311  RARQDLLT--IMVLHNKVVEVLNPLARDFKSVGTLRKDLDGLQEELAKAHNQLYLSESRV 484
              + D+++   + L N++  + +    D +     +KD+   Q EL           S++
Sbjct: 966  EEKHDIISNESLKLRNEIERIRSDAEEDIQK---WKKDVHMAQNELKNLERVCETLRSQL 1022

Query: 485  SSALDKLAQMETVVNER 535
            ++A D++A + T +NE+
Sbjct: 1023 TAANDRVASLNTTINEQ 1039

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>DHB4_RAT (P97852) Peroxisomal multifunctional enzyme type 2 (MFE-2)|
           (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid
           dehydrogenase 4) (17-beta-HSD 4) [Includes:
           D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107)
           (3-alpha,7-alpha,12-alpha-trihydroxy-5-b
          Length = 734

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +2

Query: 365 VLNPLARDFKSVGTLRKDLDGLQEELAKA-------HNQLYLSESRVSSALDKLAQMETV 523
           V+N L  DFK VG      D + EE+ +        ++ +   E  V +ALD   +++ V
Sbjct: 36  VVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTALDTFGRIDVV 95

Query: 524 VNERLLSDGSAFANTAD 574
           VN   +    +F+  +D
Sbjct: 96  VNNAGILRDRSFSRISD 112

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>NUF1_YEAST (P32380) Protein NUF1 (Spindle poly body spacer protein SPC110)|
          Length = 944

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 13/43 (30%), Positives = 29/43 (67%)
 Frame = +2

Query: 407 LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVVNER 535
           L+  +  L+EE++  ++QL   E +++S + +L Q+E+ +N+R
Sbjct: 358 LKNKIAELEEEISTKNSQLIAKEGKLASLMAQLTQLESKLNQR 400

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>SYV_STAES (Q8CS83) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 876

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +2

Query: 329 LTIMVLHNKVVEVLNPLARDFKSVGTLRKDLDGLQEELAKAHNQLYLSESRVSSALDKLA 508
           +T +V+  KVV  L  L    K +  L K+LD LQ EL +   +L  +E+ V+ A +K+ 
Sbjct: 792 MTTVVVAGKVVLPLEGLIDMDKEIARLEKELDKLQSELDRVDKKL-SNENFVNKAPEKII 850

Query: 509 QME 517
             E
Sbjct: 851 NEE 853

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>SYV_STAEQ (Q5HNN9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 876

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +2

Query: 329 LTIMVLHNKVVEVLNPLARDFKSVGTLRKDLDGLQEELAKAHNQLYLSESRVSSALDKLA 508
           +T +V+  KVV  L  L    K +  L K+LD LQ EL +   +L  +E+ V+ A +K+ 
Sbjct: 792 MTTVVVAGKVVLPLEGLIDMDKEIARLEKELDKLQSELDRVDKKL-SNENFVNKAPEKII 850

Query: 509 QME 517
             E
Sbjct: 851 NEE 853

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>DHB4_HUMAN (P51659) Peroxisomal multifunctional enzyme type 2 (MFE-2)|
           (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid
           dehydrogenase 4) (17-beta-HSD 4) [Includes:
           D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107)
           (3-alpha,7-alpha,12-alpha-trihydroxy-5
          Length = 735

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +2

Query: 365 VLNPLARDFKSVGTLRKDLDGLQEELAKA-------HNQLYLSESRVSSALDKLAQMETV 523
           V+N L  DFK VG      D + EE+ +        ++ +   E  V +ALD   +++ V
Sbjct: 36  VVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVV 95

Query: 524 VNERLLSDGSAFANTAD 574
           VN   +    +FA  +D
Sbjct: 96  VNNAGILRDRSFARISD 112

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>TPM_METEN (Q25456) Tropomyosin (Allergen Met e 1) (Met e I)|
          Length = 274

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 392 KSVGTLRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQM 514
           K +  L  DLD +QE L KA+NQL   +  +S+A  ++A +
Sbjct: 38  KRMQQLENDLDQVQESLLKANNQLVEKDKALSNAEGEVAAL 78

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>IFNB2_BOVIN (P01576) Interferon beta-2 precursor|
          Length = 186

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 335 IMVLHNKVVEVLNPLARDFKSVGTLRKDLDGLQEELAKAHNQL 463
           I+V++  + ++ N L RDF S G     ++ L EEL +  N L
Sbjct: 77  ILVIYEMLQQIFNILTRDFSSTGWSETIIEDLLEELYEQMNHL 119

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>MYH6_MESAU (P13539) Myosin heavy chain, cardiac muscle alpha isoform|
            (MyHC-alpha)
          Length = 1939

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 11/40 (27%), Positives = 27/40 (67%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  +++A ++ ++
Sbjct: 952  LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEII 991

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>MYH6_HUMAN (P13533) Myosin heavy chain, cardiac muscle alpha isoform|
            (MyHC-alpha)
          Length = 1939

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 11/40 (27%), Positives = 27/40 (67%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  +++A ++ ++
Sbjct: 952  LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEII 991

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>MYH6_RAT (P02563) Myosin heavy chain, cardiac muscle alpha isoform|
            (MyHC-alpha)
          Length = 1938

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 11/40 (27%), Positives = 27/40 (67%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  +++A ++ ++
Sbjct: 951  LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEII 990

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>MYH6_MOUSE (Q02566) Myosin heavy chain, cardiac muscle alpha isoform|
            (MyHC-alpha)
          Length = 1938

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 11/40 (27%), Positives = 27/40 (67%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  +++A ++ ++
Sbjct: 952  LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEII 991

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>MYH6_RABIT (P04460) Myosin heavy chain, cardiac muscle alpha isoform|
           (MyHC-alpha) (Alpha isomyosin) (Fragment)
          Length = 465

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 11/40 (27%), Positives = 27/40 (67%)
 Frame = +2

Query: 407 LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
           L+KD+D L+  LAK   + + +E++V +  +++A ++ ++
Sbjct: 147 LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEII 186

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>RGPD8_HUMAN (Q99666) RANBP2-like and GRIP domain-containing protein 8|
            (Ran-binding protein 2-like 1) (RanBP2L1) (Sperm membrane
            protein BS-63)
          Length = 1765

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +2

Query: 152  RDDSADYLKDNH--HWEALFHVDDPGPRVPIEKGQYLEAKQALDVVRFDIQYCDWRARQD 325
            +DD A   +D+   H+E +  + +    V  E+G+ +   Q + + RFD +   W+ R  
Sbjct: 1022 KDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEVSQWKER-G 1080

Query: 326  LLTIMVLHNKVVEVLNPLAR 385
            L  + +L N+V   L  L R
Sbjct: 1081 LGNLKILKNEVNGKLRMLMR 1100

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>MYH3_RAT (P12847) Myosin heavy chain, fast skeletal muscle, embryonic|
          Length = 1940

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  ++LA ++  +
Sbjct: 951  LKKDIDDLELTLAKVEKEKHATENKVKNLTEELAGLDETI 990

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>TOLB_VIBVY (Q7MJ87) Protein tolB precursor|
          Length = 449

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +2

Query: 239 EKGQYLEAKQALDVVRFDIQYCDWRARQDLLTIM----VLHNKVVEVLNPLARDF 391
           EKG+Y+   Q +DVVR  +     RA +D   ++    VL NKV  +  P  R++
Sbjct: 109 EKGEYVINYQLVDVVRGQLTSGQSRALEDGQLVLSKDHVLFNKVATITAPRMREY 163

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>MYSS_RABIT (P02562) Myosin heavy chain, skeletal muscle (Fragments)|
          Length = 1084

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
 Frame = +2

Query: 305 DWRARQDLLTIMVLHNKVVEVLNPLARDFKSVGT---------------LRKDLDGLQEE 439
           D   RQDL+   +     ++ +   A D + +                 L+KD+D L+  
Sbjct: 59  DAEERQDLIKTKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELT 118

Query: 440 LAKAHNQLYLSESRVSSALDKLAQMETVV 526
           LAK   + + +E++V +  +++A ++  +
Sbjct: 119 LAKVEKEKHATENKVKNLTEEMAGLDETI 147

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>LPXA_AGRT5 (Q8UFL3) Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine|
           O-acyltransferase (EC 2.3.1.129)
           (UDP-N-acetylglucosamine acyltransferase)
          Length = 271

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 116 GRYGGIKVYAVLRD--DSADYLKDNHHWEALFHVDDP--GPRVPIEKGQYLEAKQALDVV 283
           G  GG+ V  + R   + AD  K    ++A+F  +    G    I++  YL+  QAL+++
Sbjct: 194 GILGGLNVVGMTRSGIERADIHKVRRVYKAIFEAEGTIRGNAAAIDRNDYLDCPQALEII 253

Query: 284 RF 289
            F
Sbjct: 254 DF 255

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>MYH3_CHICK (P02565) Myosin heavy chain, fast skeletal muscle, embryonic|
          Length = 1940

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  +++A ++  +
Sbjct: 955  LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAALDETI 994

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>TOLB_VIBVU (Q8DAM3) Protein tolB precursor|
          Length = 443

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +2

Query: 239 EKGQYLEAKQALDVVRFDIQYCDWRARQDLLTIM----VLHNKVVEVLNPLARDF 391
           EKG+Y+   Q +DVVR  +     RA +D   ++    VL NKV  +  P  R++
Sbjct: 103 EKGEYVINYQLVDVVRGQLTSGQSRALEDGQLVLSKDHVLFNKVATITAPRMREY 157

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>MYH7_RAT (P02564) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)|
          Length = 1935

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 10/40 (25%), Positives = 27/40 (67%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L++D+D L+  LAK   + + +E++V +  +++A ++ ++
Sbjct: 950  LKRDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEII 989

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>MYH7_PIG (P79293) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)|
          Length = 1935

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 10/40 (25%), Positives = 27/40 (67%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L++D+D L+  LAK   + + +E++V +  +++A ++ ++
Sbjct: 950  LKRDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEII 989

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>MYH7_HUMAN (P12883) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)|
          Length = 1935

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 10/40 (25%), Positives = 27/40 (67%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L++D+D L+  LAK   + + +E++V +  +++A ++ ++
Sbjct: 950  LKRDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEII 989

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>MYH1_MOUSE (Q5SX40) Myosin-1 (Myosin heavy chain, skeletal muscle, adult 1)|
          Length = 1942

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  +++A ++  +
Sbjct: 957  LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETI 996

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>MYSC_CHICK (P29616) Myosin heavy chain, cardiac muscle isoform (Fragment)|
          Length = 1102

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 11/42 (26%), Positives = 28/42 (66%)
 Frame = +2

Query: 407 LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVVNE 532
           L+KD+D L+  LAK   + + +E++V +  +++A ++  +++
Sbjct: 116 LKKDIDDLEITLAKVEKEKHATENKVKNLTEEMATLDENISK 157

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>RBP22_HUMAN (Q53T03) Ran-binding protein 2-like 2 (RanBP2L2)|
          Length = 1765

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +2

Query: 152  RDDSADYLKDNH--HWEALFHVDDPGPRVPIEKGQYLEAKQALDVVRFDIQYCDWRARQD 325
            +DD A   +D+   H+E +  + +    V  E+G+ +   Q + + RFD +   W+ R  
Sbjct: 1022 KDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEVRQWKER-G 1080

Query: 326  LLTIMVLHNKVVEVLNPLAR 385
            L  + +L N+V   L  L R
Sbjct: 1081 LGNLKILKNEVNGKLRMLMR 1100

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>RBP23_HUMAN (O14715) Ran-binding protein 2-like 3 (RanBP2L3) (Fragment)|
          Length = 755

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +2

Query: 152 RDDSADYLKDNH--HWEALFHVDDPGPRVPIEKGQYLEAKQALDVVRFDIQYCDWRARQD 325
           +DD A   +D+   H+E +  + +    V  E+G+ +   Q + + RFD +   W+ R  
Sbjct: 12  KDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEVRQWKER-G 70

Query: 326 LLTIMVLHNKVVEVLNPLAR 385
           L  + +L N+V   L  L R
Sbjct: 71  LGNLKILKNEVNGKLRMLMR 90

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>MYSS_CHICK (P13538) Myosin heavy chain, skeletal muscle, adult|
          Length = 1938

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  +++A ++  +
Sbjct: 952  LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAVLDETI 991

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>MYH8_HUMAN (P13535) Myosin-8 (Myosin heavy chain, skeletal muscle, perinatal)|
            (MyHC-perinatal)
          Length = 1937

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  +++A ++  +
Sbjct: 953  LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETI 992

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>MYH4_RABIT (Q28641) Myosin-4 (Myosin heavy chain, skeletal muscle, juvenile)|
          Length = 1938

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  +++A ++  +
Sbjct: 953  LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETI 992

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>MYH4_HUMAN (Q9Y623) Myosin-4 (Myosin heavy chain, skeletal muscle, fetal)|
            (Myosin heavy chain IIb) (MyHC-IIb)
          Length = 1939

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  +++A ++  +
Sbjct: 954  LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETI 993

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>MYH1_HUMAN (P12882) Myosin-1 (Myosin heavy chain, skeletal muscle, adult 1)|
            (Myosin heavy chain IIx/d) (MyHC-IIx/d)
          Length = 1939

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  +++A ++  +
Sbjct: 954  LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETI 993

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>MYH2_HUMAN (Q9UKX2) Myosin heavy chain, skeletal muscle, adult 2 (Myosin heavy|
            chain IIa) (MyHC-IIa)
          Length = 1941

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  +++A ++  +
Sbjct: 956  LKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETI 995

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>MYH7_RABIT (P04461) Myosin heavy chain, cardiac muscle beta isoform|
           (MyHC-beta) (Beta isomyosin) (Fragment)
          Length = 736

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 10/40 (25%), Positives = 27/40 (67%)
 Frame = +2

Query: 407 LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
           L++D+D L+  LAK   + + +E++V +  +++A ++ ++
Sbjct: 514 LKRDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEII 553

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>A1AG1_HUMAN (P02763) Alpha-1-acid glycoprotein 1 precursor (AGP 1)|
           (Orosomucoid-1) (OMD 1)
          Length = 201

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = +2

Query: 113 VGRY-GGIKVYA---VLRDDSADYL----KDNHHWEALFHVDDPGPRVPIEKGQYLEAKQ 268
           + RY GG + +A   +LRD     L     D  +W    + D P      + G++ EA  
Sbjct: 106 ISRYVGGQEHFAHLLILRDTKTYMLAFDVNDEKNWGLSVYADKP-ETTKEQLGEFYEALD 164

Query: 269 ALDVVRFDIQYCDWR 313
            L + + D+ Y DW+
Sbjct: 165 CLRIPKSDVVYTDWK 179

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>DHB4_MOUSE (P51660) Peroxisomal multifunctional enzyme type 2 (MFE-2)|
           (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid
           dehydrogenase 4) (17-beta-HSD 4) [Includes:
           D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107)
           (3-alpha,7-alpha,12-alpha-trihydroxy-5
          Length = 734

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = +2

Query: 365 VLNPLARDFKSVGTLRKDLDGLQEELAKA-------HNQLYLSESRVSSALDKLAQMETV 523
           ++N L  DFK +G      D +  E+ +        ++ +   E  V +ALD   +++ V
Sbjct: 36  IVNDLGGDFKGIGKGSSAADKVVAEIRRKGGKAVANYDSVEAGEKLVKTALDTFGRIDVV 95

Query: 524 VNERLLSDGSAFANTAD 574
           VN   +    +F+  +D
Sbjct: 96  VNNAGILRDRSFSRISD 112

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>MYH3_HUMAN (P11055) Myosin heavy chain, fast skeletal muscle, embryonic (Muscle|
            embryonic myosin heavy chain) (SMHCE)
          Length = 1940

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 407  LRKDLDGLQEELAKAHNQLYLSESRVSSALDKLAQMETVV 526
            L+KD+D L+  LAK   + + +E++V +  ++L+ ++  +
Sbjct: 951  LKKDIDDLELTLAKVEKEKHATENKVKNLTEELSGLDETI 990

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>RBP26_HUMAN (Q68DN6) Ran-binding protein 2-like 6 (RanBP2L6)|
          Length = 1748

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +2

Query: 152  RDDSADYLKDNH--HWEALFHVDDPGPRVPIEKGQYLEAKQALDVVRFDIQYCDWRARQD 325
            +DD A   +D+   H+E +  + +    V  E+G+ +   Q + + RFD +   W+ R  
Sbjct: 1007 KDDDACKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEISQWKER-G 1065

Query: 326  LLTIMVLHNKV 358
            L  + +L N+V
Sbjct: 1066 LGNLKILKNEV 1076


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,022,813
Number of Sequences: 219361
Number of extensions: 1689320
Number of successful extensions: 5368
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 5055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5364
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result