Clone Name | basd2p07 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197804.1| Oryza sativa (japonica cultivar-group) putative chlorophyll synthase (OSJNBa0057L21.2), mRNA Length = 2207 Score = 157 bits (79), Expect = 5e-35 Identities = 190/227 (83%) Strand = Plus / Plus Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250 ||||||||| |||||||||| || ||||| || || |||||||| || | || ||| || Sbjct: 194 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 253 Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310 | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| ||| Sbjct: 254 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 313 Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggtggtggaggttctt 370 ||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||||| Sbjct: 314 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggtggtagaggttctt 373 Query: 371 aatcctttagcaagggacttcaagtcggtcgggaccctgaggaaaga 417 ||||||||||||||||| |||||||| | || ||| |||||||||| Sbjct: 374 aatcctttagcaagggagttcaagtcaattggaaccttgaggaaaga 420 Score = 91.7 bits (46), Expect = 3e-15 Identities = 106/126 (84%) Strand = Plus / Plus Query: 25 cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84 |||||| ||||||||||| || || ||||| || || |||||||| ||||||||||||| Sbjct: 31 cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 90 Query: 85 ctccttccgctgcctctccagaaagggggttggcaggtatggtggaatcaaggtgtacgc 144 |||||| | || |||||||||||| ||||| || ||||| |||||||||||||| || Sbjct: 91 ttccttcaggtgttgctccagaaagggtgttggtagatatggaggaatcaaggtgtatgc 150 Query: 145 ggtgct 150 |||||| Sbjct: 151 ggtgct 156
>gb|AF284781.1|AF284781 Oryza sativa LLS1 protein (Lls1) mRNA, complete cds Length = 2138 Score = 157 bits (79), Expect = 5e-35 Identities = 190/227 (83%) Strand = Plus / Plus Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250 ||||||||| |||||||||| || ||||| || || |||||||| || | || ||| || Sbjct: 253 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 312 Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310 | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| ||| Sbjct: 313 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 372 Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggtggtggaggttctt 370 ||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||||| Sbjct: 373 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggtggtagaggttctt 432 Query: 371 aatcctttagcaagggacttcaagtcggtcgggaccctgaggaaaga 417 ||||||||||||||||| |||||||| | || ||| |||||||||| Sbjct: 433 aatcctttagcaagggagttcaagtcaattggaaccttgaggaaaga 479 Score = 91.7 bits (46), Expect = 3e-15 Identities = 106/126 (84%) Strand = Plus / Plus Query: 25 cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84 |||||| ||||||||||| || || ||||| || || |||||||| ||||||||||||| Sbjct: 90 cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 149 Query: 85 ctccttccgctgcctctccagaaagggggttggcaggtatggtggaatcaaggtgtacgc 144 |||||| | || |||||||||||| ||||| || ||||| |||||||||||||| || Sbjct: 150 ttccttcaggtgttgctccagaaagggtgttggtagatatggaggaatcaaggtgtatgc 209 Query: 145 ggtgct 150 |||||| Sbjct: 210 ggtgct 215
>dbj|AK071899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059G06, full insert sequence Length = 2088 Score = 157 bits (79), Expect = 5e-35 Identities = 190/227 (83%) Strand = Plus / Plus Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250 ||||||||| |||||||||| || ||||| || || |||||||| || | || ||| || Sbjct: 215 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 274 Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310 | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| ||| Sbjct: 275 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 334 Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggtggtggaggttctt 370 ||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||||| Sbjct: 335 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggtggtagaggttctt 394 Query: 371 aatcctttagcaagggacttcaagtcggtcgggaccctgaggaaaga 417 ||||||||||||||||| |||||||| | || ||| |||||||||| Sbjct: 395 aatcctttagcaagggagttcaagtcaattggaaccttgaggaaaga 441 Score = 91.7 bits (46), Expect = 3e-15 Identities = 106/126 (84%) Strand = Plus / Plus Query: 25 cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84 |||||| ||||||||||| || || ||||| || || |||||||| ||||||||||||| Sbjct: 52 cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 111 Query: 85 ctccttccgctgcctctccagaaagggggttggcaggtatggtggaatcaaggtgtacgc 144 |||||| | || |||||||||||| ||||| || ||||| |||||||||||||| || Sbjct: 112 ttccttcaggtgttgctccagaaagggtgttggtagatatggaggaatcaaggtgtatgc 171 Query: 145 ggtgct 150 |||||| Sbjct: 172 ggtgct 177
>dbj|AK067730.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116K15, full insert sequence Length = 2540 Score = 157 bits (79), Expect = 5e-35 Identities = 190/227 (83%) Strand = Plus / Plus Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250 ||||||||| |||||||||| || ||||| || || |||||||| || | || ||| || Sbjct: 617 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 676 Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310 | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| ||| Sbjct: 677 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 736 Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggtggtggaggttctt 370 ||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||||| Sbjct: 737 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggtggtagaggttctt 796 Query: 371 aatcctttagcaagggacttcaagtcggtcgggaccctgaggaaaga 417 ||||||||||||||||| |||||||| | || ||| |||||||||| Sbjct: 797 aatcctttagcaagggagttcaagtcaattggaaccttgaggaaaga 843 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Plus Query: 108 agggggttggcaggtatggtggaatcaaggtgtacgcggtgct 150 |||| ||||| || ||||| |||||||||||||| |||||||| Sbjct: 537 agggtgttggtagatatggaggaatcaaggtgtatgcggtgct 579
>dbj|AK065124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P04, full insert sequence Length = 2090 Score = 157 bits (79), Expect = 5e-35 Identities = 190/227 (83%) Strand = Plus / Plus Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250 ||||||||| |||||||||| || ||||| || || |||||||| || | || ||| || Sbjct: 215 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 274 Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310 | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| ||| Sbjct: 275 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 334 Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggtggtggaggttctt 370 ||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||||| Sbjct: 335 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggtggtagaggttctt 394 Query: 371 aatcctttagcaagggacttcaagtcggtcgggaccctgaggaaaga 417 ||||||||||||||||| |||||||| | || ||| |||||||||| Sbjct: 395 aatcctttagcaagggagttcaagtcaattggaaccttgaggaaaga 441 Score = 91.7 bits (46), Expect = 3e-15 Identities = 106/126 (84%) Strand = Plus / Plus Query: 25 cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84 |||||| ||||||||||| || || ||||| || || |||||||| ||||||||||||| Sbjct: 52 cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 111 Query: 85 ctccttccgctgcctctccagaaagggggttggcaggtatggtggaatcaaggtgtacgc 144 |||||| | || |||||||||||| ||||| || ||||| |||||||||||||| || Sbjct: 112 ttccttcaggtgttgctccagaaagggtgttggtagatatggaggaatcaaggtgtatgc 171 Query: 145 ggtgct 150 |||||| Sbjct: 172 ggtgct 177
>ref|NM_197802.1| Oryza sativa (japonica cultivar-group) putative chlorophyll synthase (OSJNBa0057L21.9), mRNA Length = 1560 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Plus Query: 281 gtccgcttcgacatccagtactgcgactggagggcccggcaggacctgctcaccatcatg 340 ||||| |||| ||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 178 gtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatg 237 Query: 341 gtgctccacaacaaggtggtggaggttcttaatcctttagcaagggacttcaagtc 396 || || |||||||||||||| |||||||| || ||||||||| || |||||||| Sbjct: 238 gttctgcacaacaaggtggtagaggttctcaaatctttagcaatagagttcaagtc 293
>dbj|AK063367.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D11, full insert sequence Length = 1949 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Plus Query: 281 gtccgcttcgacatccagtactgcgactggagggcccggcaggacctgctcaccatcatg 340 ||||| |||| ||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 261 gtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatg 320 Query: 341 gtgctccacaacaaggtggtggaggttcttaatcctttagcaagggacttcaagtc 396 || || |||||||||||||| |||||||| || ||||||||| || |||||||| Sbjct: 321 gttctgcacaacaaggtggtagaggttctcaaatctttagcaatagagttcaagtc 376
>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete sequence Length = 183046 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 281 gtccgcttcgacatccagtactgcgactggagggcccggcaggacctgctcaccatcatg 340 ||||| |||| ||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 51355 gtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatg 51414 Query: 341 gtgctccacaacaaggt 357 || || ||||||||||| Sbjct: 51415 gttctgcacaacaaggt 51431 Score = 93.7 bits (47), Expect = 7e-16 Identities = 137/167 (82%) Strand = Plus / Plus Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250 ||||||||| |||||||||| || ||||| || || |||||||| || | || ||| || Sbjct: 42221 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 42280 Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310 | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| ||| Sbjct: 42281 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 42340 Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggt 357 ||||| ||||||||||| |||||||||||||| || ||||||||||| Sbjct: 42341 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggt 42387 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 354 aggtggtggaggttcttaatcctttagcaagggacttcaagtcggtcgggaccctgagga 413 ||||||| |||||||||||||||||||||||||| |||||||| | || ||| |||||| Sbjct: 42558 aggtggtagaggttcttaatcctttagcaagggagttcaagtcaattggaaccttgagga 42617 Query: 414 aaga 417 |||| Sbjct: 42618 aaga 42621 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 25 cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84 |||||| ||||||||||| || || ||||| || || |||||||| ||||||||||||| Sbjct: 41519 cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 41578 Query: 85 ctccttc 91 |||||| Sbjct: 41579 ttccttc 41585 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Plus Query: 108 agggggttggcaggtatggtggaatcaaggtgtacgcggtgct 150 |||| ||||| || ||||| |||||||||||||| |||||||| Sbjct: 42141 agggtgttggtagatatggaggaatcaaggtgtatgcggtgct 42183
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 281 gtccgcttcgacatccagtactgcgactggagggcccggcaggacctgctcaccatcatg 340 ||||| |||| ||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 21956966 gtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatg 21956907 Query: 341 gtgctccacaacaaggt 357 || || ||||||||||| Sbjct: 21956906 gttctgcacaacaaggt 21956890 Score = 93.7 bits (47), Expect = 7e-16 Identities = 137/167 (82%) Strand = Plus / Minus Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250 ||||||||| |||||||||| || ||||| || || |||||||| || | || ||| || Sbjct: 21966100 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 21966041 Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310 | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| ||| Sbjct: 21966040 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 21965981 Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggt 357 ||||| ||||||||||| |||||||||||||| || ||||||||||| Sbjct: 21965980 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggt 21965934 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 354 aggtggtggaggttcttaatcctttagcaagggacttcaagtcggtcgggaccctgagga 413 ||||||| |||||||||||||||||||||||||| |||||||| | || ||| |||||| Sbjct: 21965763 aggtggtagaggttcttaatcctttagcaagggagttcaagtcaattggaaccttgagga 21965704 Query: 414 aaga 417 |||| Sbjct: 21965703 aaga 21965700 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 25 cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84 |||||| ||||||||||| || || ||||| || || |||||||| ||||||||||||| Sbjct: 21966802 cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 21966743 Query: 85 ctccttc 91 |||||| Sbjct: 21966742 ttccttc 21966736 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Minus Query: 108 agggggttggcaggtatggtggaatcaaggtgtacgcggtgct 150 |||| ||||| || ||||| |||||||||||||| |||||||| Sbjct: 21966180 agggtgttggtagatatggaggaatcaaggtgtatgcggtgct 21966138
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 281 gtccgcttcgacatccagtactgcgactggagggcccggcaggacctgctcaccatcatg 340 ||||| |||| ||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 21968629 gtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatg 21968570 Query: 341 gtgctccacaacaaggt 357 || || ||||||||||| Sbjct: 21968569 gttctgcacaacaaggt 21968553 Score = 93.7 bits (47), Expect = 7e-16 Identities = 137/167 (82%) Strand = Plus / Minus Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250 ||||||||| |||||||||| || ||||| || || |||||||| || | || ||| || Sbjct: 21977763 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 21977704 Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310 | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| ||| Sbjct: 21977703 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 21977644 Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggt 357 ||||| ||||||||||| |||||||||||||| || ||||||||||| Sbjct: 21977643 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggt 21977597 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 354 aggtggtggaggttcttaatcctttagcaagggacttcaagtcggtcgggaccctgagga 413 ||||||| |||||||||||||||||||||||||| |||||||| | || ||| |||||| Sbjct: 21977426 aggtggtagaggttcttaatcctttagcaagggagttcaagtcaattggaaccttgagga 21977367 Query: 414 aaga 417 |||| Sbjct: 21977366 aaga 21977363 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 25 cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84 |||||| ||||||||||| || || ||||| || || |||||||| ||||||||||||| Sbjct: 21978465 cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 21978406 Query: 85 ctccttc 91 |||||| Sbjct: 21978405 ttccttc 21978399 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Minus Query: 108 agggggttggcaggtatggtggaatcaaggtgtacgcggtgct 150 |||| ||||| || ||||| |||||||||||||| |||||||| Sbjct: 21977843 agggtgttggtagatatggaggaatcaaggtgtatgcggtgct 21977801
>dbj|AK100517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100H07, full insert sequence Length = 2983 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 281 gtccgcttcgacatccagtactgcgactggagggcccggcaggacctgctcaccatcatg 340 ||||| |||| ||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 2049 gtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatg 1990 Query: 341 gt 342 || Sbjct: 1989 gt 1988
>gb|AC123817.4| Mus musculus BAC clone RP24-255D13 from chromosome 9, complete sequence Length = 169614 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 442 tgcaaaggctcacaaccagcttt 464 ||||||||||||||||||||||| Sbjct: 76197 tgcaaaggctcacaaccagcttt 76219
>gb|AF117830.3| Homo sapiens chromosome 8 clone SCb-296C9 map q21.3, complete sequence Length = 73259 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 524 gtcaatgaaaggctgttgtcg 544 ||||||||||||||||||||| Sbjct: 58095 gtcaatgaaaggctgttgtcg 58075
>ref|XM_741589.1| Aspergillus fumigatus Af293 synthase of the type 3 pneumococcal capsular polysaccharide (Afu7g02500) partial mRNA Length = 1101 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 ggaatcaaggtgtacgcggtgctaa 152 ||||||||| ||||||||||||||| Sbjct: 952 ggaatcaagatgtacgcggtgctaa 976
>gb|AC079967.7| Homo sapiens chromosome 8, clone RP11-1058B10, complete sequence Length = 169865 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 524 gtcaatgaaaggctgttgtcg 544 ||||||||||||||||||||| Sbjct: 82267 gtcaatgaaaggctgttgtcg 82247
>gb|AC004083.1|AC004083 Homo sapiens BAC clone CTB-109O9 from 8q21, complete sequence Length = 177726 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 524 gtcaatgaaaggctgttgtcg 544 ||||||||||||||||||||| Sbjct: 158025 gtcaatgaaaggctgttgtcg 158005
>gb|AC162375.2| Mus musculus BAC clone RP24-466F1 from chromosome 9, complete sequence Length = 164119 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggggttggcaggtatggtgga 130 ||||||||||||||||||||| Sbjct: 161040 ggggttggcaggtatggtgga 161060
>emb|CR936258.1| Natronomonas pharaonis DSM 2160 plasmid PL131 complete genome Length = 130989 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 264 agcaggcgctcgacgtcgtccgcttcgacatcc 296 ||||||||||||||| |||| || ||||||||| Sbjct: 41316 agcaggcgctcgacgacgtcagcatcgacatcc 41284
>ref|XM_516703.1| PREDICTED: Pan troglodytes similar to huntingtin-associated protein interacting protein (duo) (LOC460643), mRNA Length = 10806 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 cgggaccctgaggaaagacc 419 |||||||||||||||||||| Sbjct: 15 cgggaccctgaggaaagacc 34
>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15, complete sequence Length = 184316 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gcgacggcggccggcggcag 20 |||||||||||||||||||| Sbjct: 95221 gcgacggcggccggcggcag 95202
>gb|AC150896.6| Mus musculus BAC clone RP23-414N3 from chromosome 1, complete sequence Length = 207503 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 tgggaggccctgttccatgt 210 |||||||||||||||||||| Sbjct: 81775 tgggaggccctgttccatgt 81756
>gb|AC095025.2| Sus scrofa clone RP44-93L12, complete sequence Length = 176757 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 ttgcaaaggctcacaaccag 460 |||||||||||||||||||| Sbjct: 2877 ttgcaaaggctcacaaccag 2896
>emb|CR723051.2|CNS0GKUP Tetraodon nigroviridis full-length cDNA Length = 754 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cggcggccggcggcagccag 24 |||||||||||||||||||| Sbjct: 399 cggcggccggcggcagccag 418
>emb|CR687923.2|CNS0FTR3 Tetraodon nigroviridis full-length cDNA Length = 740 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cggcggccggcggcagccag 24 |||||||||||||||||||| Sbjct: 387 cggcggccggcggcagccag 406
>emb|CR677022.2|CNS0FLCQ Tetraodon nigroviridis full-length cDNA Length = 805 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cggcggccggcggcagccag 24 |||||||||||||||||||| Sbjct: 451 cggcggccggcggcagccag 470
>emb|CR676156.2|CNS0FKOO Tetraodon nigroviridis full-length cDNA Length = 645 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cggcggccggcggcagccag 24 |||||||||||||||||||| Sbjct: 442 cggcggccggcggcagccag 461
>emb|CR666105.2|CNS0FCXR Tetraodon nigroviridis full-length cDNA Length = 842 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cggcggccggcggcagccag 24 |||||||||||||||||||| Sbjct: 487 cggcggccggcggcagccag 506
>emb|CR664932.2|CNS0FC16 Tetraodon nigroviridis full-length cDNA Length = 843 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cggcggccggcggcagccag 24 |||||||||||||||||||| Sbjct: 488 cggcggccggcggcagccag 507
>emb|CR660647.2|CNS0F8Q5 Tetraodon nigroviridis full-length cDNA Length = 758 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cggcggccggcggcagccag 24 |||||||||||||||||||| Sbjct: 424 cggcggccggcggcagccag 443
>emb|CR658347.2|CNS0F6Y9 Tetraodon nigroviridis full-length cDNA Length = 810 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cggcggccggcggcagccag 24 |||||||||||||||||||| Sbjct: 455 cggcggccggcggcagccag 474
>emb|AL391001.12| Human DNA sequence from clone RP11-477H21 on chromosome 1 Contains part of the PBX1 gene for pre-B-cell leukemia transcription factor 1, complete sequence Length = 196730 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 gctcacaaccagctttattt 468 |||||||||||||||||||| Sbjct: 63585 gctcacaaccagctttattt 63566
>gb|AC011411.4| Homo sapiens chromosome 5 clone CTB-78O21, complete sequence Length = 163864 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 gcttcaggaggaacttgcaa 446 |||||||||||||||||||| Sbjct: 2946 gcttcaggaggaacttgcaa 2965
>gb|AC008631.6| Homo sapiens chromosome 5 clone CTB-163B16, complete sequence Length = 107857 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gcttcaggaggaacttgcaa 446 |||||||||||||||||||| Sbjct: 9845 gcttcaggaggaacttgcaa 9826
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gcgacggcggccggcggcag 20 |||||||||||||||||||| Sbjct: 6970298 gcgacggcggccggcggcag 6970279
>gb|AC095023.2| Sus scrofa clone RP44-405I2, complete sequence Length = 51739 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 ttgcaaaggctcacaaccag 460 |||||||||||||||||||| Sbjct: 33603 ttgcaaaggctcacaaccag 33622 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,404,278 Number of Sequences: 3902068 Number of extensions: 4404278 Number of successful extensions: 85664 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85469 Number of HSP's gapped (non-prelim): 191 length of query: 623 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 600 effective length of database: 17,143,297,704 effective search space: 10285978622400 effective search space used: 10285978622400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)