Clone Information

BLAST Search Result

Clone Name	basd3a14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467153.1\| Oryza sativa (japonica cultivar-group), mRNA	72	3e-09
2	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	72	3e-09
3	dbj\|AP005072.3\| Oryza sativa (japonica cultivar-group) genomic D...	72	3e-09
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	60	1e-05
5	dbj\|AP003611.3\| Oryza sativa (japonica cultivar-group) genomic D...	60	1e-05
6	dbj\|AK068967.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	60	1e-05
7	ref\|NM_190723.1\| Oryza sativa (japonica cultivar-group), predic...	58	4e-05
8	dbj\|AK070341.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	56	2e-04
9	emb\|BX255893.5\| Zebrafish DNA sequence from clone CH211-272H10 i...	44	0.62
10	gb\|AE014295.3\| Bifidobacterium longum NCC2705, complete genome	42	2.4
11	emb\|AL731811.24\| Mouse DNA sequence from clone RP23-60A1 on chro...	42	2.4
12	gb\|BC051175.1\| Mus musculus cDNA sequence BC002230, mRNA (cDNA c...	40	9.7
13	gb\|AC116520.14\| Mus musculus chromosome 15, clone RP24-340J12, c...	40	9.7
14	gb\|AC124353.5\| Mus musculus BAC clone RP24-481I14 from chromosom...	40	9.7
15	gb\|BC025577.1\| Mus musculus cDNA sequence BC002230, mRNA (cDNA c...	40	9.7
16	gb\|CP000359.1\| Deinococcus geothermalis DSM 11300, complete genome	40	9.7
17	gb\|AF461036.1\| Paralithodes camtschaticus trypsin mRNA, complete...	40	9.7
18	gb\|AC166349.4\| Mus musculus BAC clone RP24-192I21 from chromosom...	40	9.7
19	gb\|BC002230.1\| Mus musculus cDNA sequence BC002230, mRNA (cDNA c...	40	9.7
20	ref\|XM_975496.1\| PREDICTED: Mus musculus cDNA sequence BC002230 ...	40	9.7
21	ref\|XM_922248.2\| PREDICTED: Mus musculus cDNA sequence BC002230,...	40	9.7
22	ref\|XM_912077.2\| PREDICTED: Mus musculus cDNA sequence BC002230,...	40	9.7
23	ref\|XM_901387.2\| PREDICTED: Mus musculus cDNA sequence BC002230,...	40	9.7
24	ref\|XM_484171.3\| PREDICTED: Mus musculus cDNA sequence BC002230,...	40	9.7
25	gb\|DQ160197.1\| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L...	40	9.7
26	gb\|AC140458.3\| Mus musculus BAC clone RP23-19C24 from chromosome...	40	9.7
27	emb\|AL662889.5\| Human DNA sequence from clone RP11-370K11 on chr...	40	9.7
28	emb\|AL391828.10\| Human DNA sequence from clone RP11-447A22 on ch...	40	9.7
29	emb\|X94147.2\|PFDHLVIIG Pseudomonas fluorescens dhl VII gene for ...	40	9.7
30	gb\|AC110594.5\| Homo sapiens chromosome 17, clone CTD-2193J24, co...	40	9.7
31	emb\|AL109619.1\|ATT19F6 Arabidopsis thaliana DNA chromosome 4, BA...	40	9.7
32	emb\|AL161560.2\|ATCHRIV60 Arabidopsis thaliana DNA chromosome 4, ...	40	9.7
33	gb\|CP000301.1\| Rhodopseudomonas palustris BisB18, complete genome	40	9.7
34	gb\|AC159633.2\| Mus musculus BAC clone RP24-159L15 from chromosom...	40	9.7
35	gb\|AC149053.3\| Mus musculus BAC clone RP24-502E20 from chromosom...	40	9.7
36	gb\|AC010890.9\| Homo sapiens BAC clone RP11-449L24 from 2, comple...	40	9.7
37	gb\|AC097713.3\| Homo sapiens BAC clone RP11-251I17 from 2, comple...	40	9.7
38	gb\|AC126327.6\| Homo sapiens chromosome 17, clone RP11-428O23, co...	40	9.7
39	gb\|AC006063.1\|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Rosw...	40	9.7
40	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	9.7
41	emb\|BX005029.13\| Zebrafish DNA sequence from clone CH211-182D3 i...	40	9.7
42	emb\|AJ511304.1\|UBA511304 Uncultured bacterium partial dehI gene ...	40	9.7
43	emb\|AJ511303.1\|UBA511303 Uncultured bacterium partial dehI gene ...	40	9.7
44	emb\|AJ511302.1\|UBA511302 Uncultured bacterium partial dehI gene ...	40	9.7
45	emb\|AJ511300.1\|UBA511300 Uncultured bacterium partial dehI gene ...	40	9.7
46	emb\|AJ133461.1\|PPU133461 Pseudomonas putida (strain PP3) dehIcry...	40	9.7
47	emb\|AJ133459.1\|PSP133459 Pseudomonas sp. (strain K55) dehI gene,...	40	9.7
48	emb\|AJ133457.1\|PSP133457 Pseudomonas sp. (strain 17a) dehI gene,...	40	9.7
49	emb\|AL121595.5\|CNS01DRZ Human chromosome 14 DNA sequence BAC C-3...	40	9.7
50	emb\|X14429.1\|GDMYAL37 Gallus gallus MLC gene for embryonic myosi...	40	9.7
51	gb\|AF037332.1\|AF037332 Homo sapiens Eph-like receptor tyrosine k...	40	9.7
52	emb\|AL837522.8\| Mouse DNA sequence from clone RP23-264L10 on chr...	40	9.7
53	gb\|AC002343.1\|ATAC002343 Arabidopsis thaliana chromosome IV BAC ...	40	9.7

>ref|XM_467153.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 888

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 114/140 (81%)
 Strand = Plus / Plus

                                                                       
Query: 213 ggagatagaaacgagacccagatctgtgcctccagcccagcctaaccaaacagacgactc 272
           |||||| ||||||||||||| |||||| ||||||  |||| |||||||| ||||  |  |
Sbjct: 426 ggagatggaaacgagacccaaatctgttcctccaaaccagtctaaccaagcagaaaatgc 485

                                                                       
Query: 273 atcatggtctctggaaactctgaagcaactcgtggatttcacgccgcaggagattaccca 332
           | | |||||| | |||||||||||| | | | || ||||||| ||||| |||||||| ||
Sbjct: 486 agcttggtctgttgaaactctgaaggagcacttgaatttcacaccgcatgagattacaca 545

                               
Query: 333 agctatctcagccacagagt 352
            ||||| ||||| |||||||
Sbjct: 546 ggctatatcagctacagagt 565



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 115/145 (79%)
 Strand = Plus / Plus

                                                                       
Query: 380 ttgccttcatggtggttctttcgaactgggggctggatgttggtggcaccatctccagag 439
           |||||||  ||| ||||||||| |||||||| |||||  ||||||| || ||| | ||||
Sbjct: 593 ttgcctttctggcggttctttcaaactggggcctggacattggtggtactatcacaagag 652

                                                                       
Query: 440 tactggtttgtacgaggccgctcctgttcctcatcataacgaatgtaaccatcgtcatgt 499
           || | ||| | || || || || ||||| || || |||||||| |||||||| ||| |  
Sbjct: 653 tattagttggaacaagaccacttctgtttcttattataacgaacgtaaccattgtcttca 712

                                    
Query: 500 cgttgctgatggagaacagggaccc 524
           | ||| |||||||||||| ||||||
Sbjct: 713 ctttgttgatggagaacaaggaccc 737



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 177 ggagatggaaacgagacccagatctgtgcctcc 209
           |||||||||||||||||||| |||||| |||||
Sbjct: 426 ggagatggaaacgagacccaaatctgttcctcc 458



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 49  ttcaaggcaagcagtgcagttcctgaaatccaaccagtatatga 92
           |||||| |||||||  ||||||||||||| || |||||| ||||
Sbjct: 304 ttcaagacaagcagcacagttcctgaaattcagccagtaaatga 347

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 114/140 (81%)
 Strand = Plus / Plus

                                                                            
Query: 213      ggagatagaaacgagacccagatctgtgcctccagcccagcctaaccaaacagacgactc 272
                |||||| ||||||||||||| |||||| ||||||  |||| |||||||| ||||  |  |
Sbjct: 26719113 ggagatggaaacgagacccaaatctgttcctccaaaccagtctaaccaagcagaaaatgc 26719172

                                                                            
Query: 273      atcatggtctctggaaactctgaagcaactcgtggatttcacgccgcaggagattaccca 332
                | | |||||| | |||||||||||| | | | || ||||||| ||||| |||||||| ||
Sbjct: 26719173 agcttggtctgttgaaactctgaaggagcacttgaatttcacaccgcatgagattacaca 26719232

                                    
Query: 333      agctatctcagccacagagt 352
                 ||||| ||||| |||||||
Sbjct: 26719233 ggctatatcagctacagagt 26719252



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 115/145 (79%)
 Strand = Plus / Plus

                                                                            
Query: 380      ttgccttcatggtggttctttcgaactgggggctggatgttggtggcaccatctccagag 439
                |||||||  ||| ||||||||| |||||||| |||||  ||||||| || ||| | ||||
Sbjct: 26719280 ttgcctttctggcggttctttcaaactggggcctggacattggtggtactatcacaagag 26719339

                                                                            
Query: 440      tactggtttgtacgaggccgctcctgttcctcatcataacgaatgtaaccatcgtcatgt 499
                || | ||| | || || || || ||||| || || |||||||| |||||||| ||| |  
Sbjct: 26719340 tattagttggaacaagaccacttctgtttcttattataacgaacgtaaccattgtcttca 26719399

                                         
Query: 500      cgttgctgatggagaacagggaccc 524
                | ||| |||||||||||| ||||||
Sbjct: 26719400 ctttgttgatggagaacaaggaccc 26719424



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 177      ggagatggaaacgagacccagatctgtgcctcc 209
                |||||||||||||||||||| |||||| |||||
Sbjct: 26719113 ggagatggaaacgagacccaaatctgttcctcc 26719145



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 49       ttcaaggcaagcagtgcagttcctgaaatccaaccagtatatga 92
                |||||| |||||||  ||||||||||||| || |||||| ||||
Sbjct: 26718991 ttcaagacaagcagcacagttcctgaaattcagccagtaaatga 26719034

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>dbj|AP005072.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0708H12
          Length = 162381

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 114/140 (81%)
 Strand = Plus / Plus

                                                                         
Query: 213   ggagatagaaacgagacccagatctgtgcctccagcccagcctaaccaaacagacgactc 272
             |||||| ||||||||||||| |||||| ||||||  |||| |||||||| ||||  |  |
Sbjct: 81143 ggagatggaaacgagacccaaatctgttcctccaaaccagtctaaccaagcagaaaatgc 81202

                                                                         
Query: 273   atcatggtctctggaaactctgaagcaactcgtggatttcacgccgcaggagattaccca 332
             | | |||||| | |||||||||||| | | | || ||||||| ||||| |||||||| ||
Sbjct: 81203 agcttggtctgttgaaactctgaaggagcacttgaatttcacaccgcatgagattacaca 81262

                                 
Query: 333   agctatctcagccacagagt 352
              ||||| ||||| |||||||
Sbjct: 81263 ggctatatcagctacagagt 81282



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 115/145 (79%)
 Strand = Plus / Plus

                                                                         
Query: 380   ttgccttcatggtggttctttcgaactgggggctggatgttggtggcaccatctccagag 439
             |||||||  ||| ||||||||| |||||||| |||||  ||||||| || ||| | ||||
Sbjct: 81310 ttgcctttctggcggttctttcaaactggggcctggacattggtggtactatcacaagag 81369

                                                                         
Query: 440   tactggtttgtacgaggccgctcctgttcctcatcataacgaatgtaaccatcgtcatgt 499
             || | ||| | || || || || ||||| || || |||||||| |||||||| ||| |  
Sbjct: 81370 tattagttggaacaagaccacttctgtttcttattataacgaacgtaaccattgtcttca 81429

                                      
Query: 500   cgttgctgatggagaacagggaccc 524
             | ||| |||||||||||| ||||||
Sbjct: 81430 ctttgttgatggagaacaaggaccc 81454



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 177   ggagatggaaacgagacccagatctgtgcctcc 209
             |||||||||||||||||||| |||||| |||||
Sbjct: 81143 ggagatggaaacgagacccaaatctgttcctcc 81175



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 49    ttcaaggcaagcagtgcagttcctgaaatccaaccagtatatga 92
             |||||| |||||||  ||||||||||||| || |||||| ||||
Sbjct: 81021 ttcaagacaagcagcacagttcctgaaattcagccagtaaatga 81064

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 625      ctgatggacttcagcatttgcgctgtcatcatgatttgttttctttgatt 674
                ||||| |||| |||| ||||||||||||||||||| |||||| |||||||
Sbjct: 37353788 ctgatagactgcagcgtttgcgctgtcatcatgatctgttttatttgatt 37353739



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 131/165 (79%)
 Strand = Plus / Minus

                                                                            
Query: 277      tggtctctggaaactctgaagcaactcgtggatttcacgccgcaggagattacccaagct 336
                |||||| |||||||||||||| || || || ||||| | || || ||||||||||| || 
Sbjct: 37354139 tggtctgtggaaactctgaaggaaatcctgaatttcgcaccacatgagattacccaggcc 37354080

                                                                            
Query: 337      atctcagccacagagttcagccgctgcatggcatccattctcattgccttcatggtggtt 396
                || ||||| |||||||  | ||| |   |||| ||| |  ||||||  ||  ||||||||
Sbjct: 37354079 atatcagctacagagtataaccgatttttggcttccgtcatcattggttttctggtggtt 37354020

                                                             
Query: 397      ctttcgaactgggggctggatgttggtggcaccatctccagagta 441
                ||||| || ||||||||||| ||||||||||| ||| ||| ||||
Sbjct: 37354019 ctttcaaattgggggctggacgttggtggcactatcaccaaagta 37353975



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 122/153 (79%)
 Strand = Plus / Minus

                                                                            
Query: 389      tggtggttctttcgaactgggggctggatgttggtggcaccatctccagagtactggttt 448
                ||||||||||||| || ||||||||||| ||||||||||| ||| ||| |||| | ||| 
Sbjct: 37354027 tggtggttctttcaaattgggggctggacgttggtggcactatcaccaaagtattagttg 37353968

                                                                            
Query: 449      gtacgaggccgctcctgttcctcatcataacgaatgtaaccatcgtcatgtcgttgctga 508
                 ||| |||||  | || || || ||  |||||||  ||||||| ||| |  | ||| |||
Sbjct: 37353967 ctacaaggccaattctatttcttattgtaacgaacataaccattgtcttcactttgttga 37353908

                                                 
Query: 509      tggagaacagggaccccaatgcgaggggcagac 541
                ||||||||| ||||||||| | |||||| ||||
Sbjct: 37353907 tggagaacaaggaccccaacgtgaggggtagac 37353875

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>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0423B08
          Length = 151490

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 625   ctgatggacttcagcatttgcgctgtcatcatgatttgttttctttgatt 674
             ||||| |||| |||| ||||||||||||||||||| |||||| |||||||
Sbjct: 65822 ctgatagactgcagcgtttgcgctgtcatcatgatctgttttatttgatt 65773



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 131/165 (79%)
 Strand = Plus / Minus

                                                                         
Query: 277   tggtctctggaaactctgaagcaactcgtggatttcacgccgcaggagattacccaagct 336
             |||||| |||||||||||||| || || || ||||| | || || ||||||||||| || 
Sbjct: 66173 tggtctgtggaaactctgaaggaaatcctgaatttcgcaccacatgagattacccaggcc 66114

                                                                         
Query: 337   atctcagccacagagttcagccgctgcatggcatccattctcattgccttcatggtggtt 396
             || ||||| |||||||  | ||| |   |||| ||| |  ||||||  ||  ||||||||
Sbjct: 66113 atatcagctacagagtataaccgatttttggcttccgtcatcattggttttctggtggtt 66054

                                                          
Query: 397   ctttcgaactgggggctggatgttggtggcaccatctccagagta 441
             ||||| || ||||||||||| ||||||||||| ||| ||| ||||
Sbjct: 66053 ctttcaaattgggggctggacgttggtggcactatcaccaaagta 66009



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 122/153 (79%)
 Strand = Plus / Minus

                                                                         
Query: 389   tggtggttctttcgaactgggggctggatgttggtggcaccatctccagagtactggttt 448
             ||||||||||||| || ||||||||||| ||||||||||| ||| ||| |||| | ||| 
Sbjct: 66061 tggtggttctttcaaattgggggctggacgttggtggcactatcaccaaagtattagttg 66002

                                                                         
Query: 449   gtacgaggccgctcctgttcctcatcataacgaatgtaaccatcgtcatgtcgttgctga 508
              ||| |||||  | || || || ||  |||||||  ||||||| ||| |  | ||| |||
Sbjct: 66001 ctacaaggccaattctatttcttattgtaacgaacataaccattgtcttcactttgttga 65942

                                              
Query: 509   tggagaacagggaccccaatgcgaggggcagac 541
             ||||||||| ||||||||| | |||||| ||||
Sbjct: 65941 tggagaacaaggaccccaacgtgaggggtagac 65909

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>dbj|AK068967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002B20, full
           insert sequence
          Length = 1002

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 625 ctgatggacttcagcatttgcgctgtcatcatgatttgttttctttgatt 674
           ||||| |||| |||| ||||||||||||||||||| |||||| |||||||
Sbjct: 889 ctgatagactgcagcgtttgcgctgtcatcatgatctgttttatttgatt 938



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 208/266 (78%), Gaps = 1/266 (0%)
 Strand = Plus / Plus

                                                                       
Query: 277 tggtctctggaaactctgaagcaactcgtggatttcacgccgcaggagattacccaagct 336
           |||||| |||||||||||||| || || || ||||| | || || ||||||||||| || 
Sbjct: 537 tggtctgtggaaactctgaaggaaatcctgaatttcgcaccacatgagattacccaggcc 596

                                                                       
Query: 337 atctcagccacagagttcagccgctgcatggcatccattctcattgccttcatggtggtt 396
           || ||||| |||||||  | ||| |   |||| ||| |  ||||||  ||  ||||||||
Sbjct: 597 atatcagctacagagtataaccgatttttggcttccgtcatcattggttttctggtggtt 656

                                                                       
Query: 397 ctttcgaactgggggctggatgttggtggcaccatctccagagtactggtttg-tacgag 455
           ||||| || ||||||||||| ||||||||||| ||| ||| |||| | ||||| ||| ||
Sbjct: 657 ctttcaaattgggggctggacgttggtggcactatcaccaaagtattagtttgctacaag 716

                                                                       
Query: 456 gccgctcctgttcctcatcataacgaatgtaaccatcgtcatgtcgttgctgatggagaa 515
           |||  | || || || ||  |||||||  ||||||| ||| |  | ||| ||||||||||
Sbjct: 717 gccaattctatttcttattgtaacgaacataaccattgtcttcactttgttgatggagaa 776

                                     
Query: 516 cagggaccccaatgcgaggggcagac 541
           || ||||||||| | |||||| ||||
Sbjct: 777 caaggaccccaacgtgaggggtagac 802

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>ref|NM_190723.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 897

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 122/153 (79%)
 Strand = Plus / Plus

                                                                       
Query: 389 tggtggttctttcgaactgggggctggatgttggtggcaccatctccagagtactggttt 448
           ||||||||||||| || ||||||||||| ||||||||||| ||| ||| |||| | ||| 
Sbjct: 611 tggtggttctttcaaattgggggctggacgttggtggcactatcaccaaagtattagttg 670

                                                                       
Query: 449 gtacgaggccgctcctgttcctcatcataacgaatgtaaccatcgtcatgtcgttgctga 508
            ||| |||||  | || || || ||  |||||||  ||||||| ||| |  | ||| |||
Sbjct: 671 ctacaaggccaattctatttcttattgtaacgaacataaccattgtcttcactttgttga 730

                                            
Query: 509 tggagaacagggaccccaatgcgaggggcagac 541
           ||||||||| ||||||||| | |||||| ||||
Sbjct: 731 tggagaacaaggaccccaacgtgaggggtagac 763



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 131/165 (79%)
 Strand = Plus / Plus

                                                                       
Query: 277 tggtctctggaaactctgaagcaactcgtggatttcacgccgcaggagattacccaagct 336
           |||||| |||||||||||||| || || || ||||| | || || ||||||||||| || 
Sbjct: 499 tggtctgtggaaactctgaaggaaatcctgaatttcgcaccacatgagattacccaggcc 558

                                                                       
Query: 337 atctcagccacagagttcagccgctgcatggcatccattctcattgccttcatggtggtt 396
           || ||||| |||||||  | ||| |   |||| ||| |  ||||||  ||  ||||||||
Sbjct: 559 atatcagctacagagtataaccgatttttggcttccgtcatcattggttttctggtggtt 618

                                                        
Query: 397 ctttcgaactgggggctggatgttggtggcaccatctccagagta 441
           ||||| || ||||||||||| ||||||||||| ||| ||| ||||
Sbjct: 619 ctttcaaattgggggctggacgttggtggcactatcaccaaagta 663



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 625 ctgatggacttcagcatttgcgctgtcatcatgatttgttttctttga 672
           ||||| |||| |||| ||||||||||||||||||| |||||| |||||
Sbjct: 850 ctgatagactgcagcgtttgcgctgtcatcatgatctgttttatttga 897

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>dbj|AK070341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050L03, full
            insert sequence
          Length = 3713

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 166  cagcctaagagggagatggaaacgagacccagatctgtgcctcc 209
            ||||||| ||||||||||||||| ||| |||||| |||||||||
Sbjct: 2125 cagcctatgagggagatggaaacaagatccagatatgtgcctcc 2168



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 62/76 (81%)
 Strand = Plus / Plus

                                                                        
Query: 277  tggtctctggaaactctgaagcaactcgtggatttcacgccgcaggagattacccaagct 336
            |||||| |||||||||||||| || || || ||||| | || || | ||||||||| || 
Sbjct: 2200 tggtctgtggaaactctgaaggaaatcctgaatttcgcaccacatgggattacccaggcc 2259

                            
Query: 337  atctcagccacagagt 352
            || ||||| |||||||
Sbjct: 2260 atatcagctacagagt 2275

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>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
             complete sequence
          Length = 99176

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 368   catccattctcattgccttcat 389
             ||||||||||||||||||||||
Sbjct: 74541 catccattctcattgccttcat 74562

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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 488     ccatcgtcatgtcgttgctgatggagaac 516
               |||||| ||||||||||||| ||||||||
Sbjct: 2135283 ccatcgccatgtcgttgctgctggagaac 2135311

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>emb|AL731811.24| Mouse DNA sequence from clone RP23-60A1 on chromosome X, complete
              sequence
          Length = 167102

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 582    gctggagctcgggcttctggc 602
              |||||||||||||||||||||
Sbjct: 138646 gctggagctcgggcttctggc 138666

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>gb|BC051175.1| Mus musculus cDNA sequence BC002230, mRNA (cDNA clone IMAGE:6310583),
            partial cds
          Length = 3664

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 230  ccagatctgtgcctccagcccagc 253
            ||||| ||||||||||||||||||
Sbjct: 2625 ccagagctgtgcctccagcccagc 2648

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>gb|AC116520.14| Mus musculus chromosome 15, clone RP24-340J12, complete sequence
          Length = 149118

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   tctgtgcctccagcccagcc 254
             ||||||||||||||||||||
Sbjct: 79731 tctgtgcctccagcccagcc 79750

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>gb|AC124353.5| Mus musculus BAC clone RP24-481I14 from chromosome 12, complete
             sequence
          Length = 152881

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 582   gctggagctcgggcttctgg 601
             ||||||||||||||||||||
Sbjct: 70495 gctggagctcgggcttctgg 70514

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>gb|BC025577.1| Mus musculus cDNA sequence BC002230, mRNA (cDNA clone MGC:38228
            IMAGE:5323598), complete cds
          Length = 2358

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 230  ccagatctgtgcctccagcccagc 253
            ||||| ||||||||||||||||||
Sbjct: 1340 ccagagctgtgcctccagcccagc 1363

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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 301     ctcgtggatttcacgccgca 320
               ||||||||||||||||||||
Sbjct: 1165087 ctcgtggatttcacgccgca 1165068

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>gb|AF461036.1| Paralithodes camtschaticus trypsin mRNA, complete cds
          Length = 942

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 496 atgtcgttgctgatggagaa 515
           ||||||||||||||||||||
Sbjct: 412 atgtcgttgctgatggagaa 393

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>gb|AC166349.4| Mus musculus BAC clone RP24-192I21 from chromosome 12, complete sequence
          Length = 168529

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 230    ccagatctgtgcctccagcccagc 253
              ||||| ||||||||||||||||||
Sbjct: 101942 ccagagctgtgcctccagcccagc 101919

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>gb|BC002230.1| Mus musculus cDNA sequence BC002230, mRNA (cDNA clone
           IMAGE:3491407), partial cds
          Length = 1431

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 230 ccagatctgtgcctccagcccagc 253
           ||||| ||||||||||||||||||
Sbjct: 429 ccagagctgtgcctccagcccagc 452

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>ref|XM_975496.1| PREDICTED: Mus musculus cDNA sequence BC002230 (BC002230), mRNA
          Length = 1811

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 230 ccagatctgtgcctccagcccagc 253
           ||||| ||||||||||||||||||
Sbjct: 823 ccagagctgtgcctccagcccagc 846

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>ref|XM_922248.2| PREDICTED: Mus musculus cDNA sequence BC002230, transcript variant
           4 (BC002230), mRNA
          Length = 1811

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 230 ccagatctgtgcctccagcccagc 253
           ||||| ||||||||||||||||||
Sbjct: 823 ccagagctgtgcctccagcccagc 846

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>ref|XM_912077.2| PREDICTED: Mus musculus cDNA sequence BC002230, transcript variant 3
            (BC002230), mRNA
          Length = 3708

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 230  ccagatctgtgcctccagcccagc 253
            ||||| ||||||||||||||||||
Sbjct: 2720 ccagagctgtgcctccagcccagc 2743

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>ref|XM_901387.2| PREDICTED: Mus musculus cDNA sequence BC002230, transcript variant
           2 (BC002230), mRNA
          Length = 1811

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 230 ccagatctgtgcctccagcccagc 253
           ||||| ||||||||||||||||||
Sbjct: 823 ccagagctgtgcctccagcccagc 846

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>ref|XM_484171.3| PREDICTED: Mus musculus cDNA sequence BC002230, transcript variant 1
            (BC002230), mRNA
          Length = 3708

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 230  ccagatctgtgcctccagcccagc 253
            ||||| ||||||||||||||||||
Sbjct: 2720 ccagagctgtgcctccagcccagc 2743

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>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds
          Length = 660392

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   catccattctcattgccttc 387
             ||||||||||||||||||||
Sbjct: 29359 catccattctcattgccttc 29378

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>gb|AC140458.3| Mus musculus BAC clone RP23-19C24 from chromosome 19, complete sequence
          Length = 186016

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   tggatgttggtggcaccatc 432
             ||||||||||||||||||||
Sbjct: 90532 tggatgttggtggcaccatc 90513

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>emb|AL662889.5| Human DNA sequence from clone RP11-370K11 on chromosome 1 Contains a
             fatty acid binding protein, muscle and heart
             (mammary-derived growth inhibitor) pseudogene and part of
             the AKT3 gene for  v-akt murine thymoma viral oncogene
             homolog 3 (protein kinase B, gamma), complete sequence
          Length = 127036

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 572   tagggctaatgctggagctc 591
             ||||||||||||||||||||
Sbjct: 99071 tagggctaatgctggagctc 99090

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>emb|AL391828.10| Human DNA sequence from clone RP11-447A22 on chromosome 6 Contains part
             of the HIVEP1 gene for human immunodeficiency virus type I
             enhancer binding protein 1, complete sequence
          Length = 70104

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 229   cccagatctgtgcctccagcccag 252
             |||||||||||||||| |||||||
Sbjct: 54786 cccagatctgtgcctctagcccag 54809

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>emb|X94147.2|PFDHLVIIG Pseudomonas fluorescens dhl VII gene for 2-haloacid dehalogenase
          Length = 1670

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 530 cgaggggcagacaggccggc 549
           ||||||||||||||||||||
Sbjct: 41  cgaggggcagacaggccggc 60

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>gb|AC110594.5| Homo sapiens chromosome 17, clone CTD-2193J24, complete sequence
          Length = 159490

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    actccaaatgttcaaggcaagcag 62
             |||||||||| |||||||||||||
Sbjct: 20218 actccaaatggtcaaggcaagcag 20195

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>emb|AL109619.1|ATT19F6 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial
             sequence (ESSA project)
          Length = 77567

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   gttcctcatcataacgaatg 484
             ||||||||||||||||||||
Sbjct: 18570 gttcctcatcataacgaatg 18551

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>emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60
          Length = 196677

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 465    gttcctcatcataacgaatg 484
              ||||||||||||||||||||
Sbjct: 153542 gttcctcatcataacgaatg 153523

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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     gatttcacgccgcaggagat 326
               ||||||||||||||||||||
Sbjct: 1365233 gatttcacgccgcaggagat 1365252

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>gb|AC159633.2| Mus musculus BAC clone RP24-159L15 from chromosome 12, complete
            sequence
          Length = 188757

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 230  ccagatctgtgcctccagcccagc 253
            ||||| ||||||||||||||||||
Sbjct: 4410 ccagagctgtgcctccagcccagc 4387

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>gb|AC149053.3| Mus musculus BAC clone RP24-502E20 from chromosome 7, complete sequence
          Length = 221785

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 556    cttggctctgatggcttagg 575
              ||||||||||||||||||||
Sbjct: 114132 cttggctctgatggcttagg 114113

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>gb|AC010890.9| Homo sapiens BAC clone RP11-449L24 from 2, complete sequence
          Length = 62764

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 137   ggacctatgattatgcagcagcaa 160
             ||||||||| ||||||||||||||
Sbjct: 17610 ggacctatgtttatgcagcagcaa 17587

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>gb|AC097713.3| Homo sapiens BAC clone RP11-251I17 from 2, complete sequence
          Length = 173790

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 547   ggcatcagccttggctctga 566
             ||||||||||||||||||||
Sbjct: 61207 ggcatcagccttggctctga 61188

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>gb|AC126327.6| Homo sapiens chromosome 17, clone RP11-428O23, complete sequence
          Length = 181517

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 39    actccaaatgttcaaggcaagcag 62
             |||||||||| |||||||||||||
Sbjct: 81354 actccaaatggtcaaggcaagcag 81377

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>gb|AC006063.1|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Roswell Park Cancer Institute Human
              PAC Library) complete sequence
          Length = 150001

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 503    tgctgatggagaacagggac 522
              ||||||||||||||||||||
Sbjct: 101115 tgctgatggagaacagggac 101096

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 455     ggccgctcctgttcctcatc 474
               ||||||||||||||||||||
Sbjct: 8210747 ggccgctcctgttcctcatc 8210766

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>emb|BX005029.13| Zebrafish DNA sequence from clone CH211-182D3 in linkage group 5,
             complete sequence
          Length = 128948

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 653   tcatgatttgttttctttga 672
             ||||||||||||||||||||
Sbjct: 70444 tcatgatttgttttctttga 70425

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>emb|AJ511304.1|UBA511304 Uncultured bacterium partial dehI gene for putative halocarboxylic
           acid dehalogenase, clone AS-1o-5
          Length = 477

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 530 cgaggggcagacaggccggc 549
           ||||||||||||||||||||
Sbjct: 159 cgaggggcagacaggccggc 178

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>emb|AJ511303.1|UBA511303 Uncultured bacterium partial dehI gene for putative halocarboxylic
           acid dehalogenase, clone AS-1o-3
          Length = 477

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 530 cgaggggcagacaggccggc 549
           ||||||||||||||||||||
Sbjct: 159 cgaggggcagacaggccggc 178

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>emb|AJ511302.1|UBA511302 Uncultured bacterium partial dehI gene for putative halocarboxylic
           acid dehalogenase, clone AS-1o-2
          Length = 477

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 530 cgaggggcagacaggccggc 549
           ||||||||||||||||||||
Sbjct: 159 cgaggggcagacaggccggc 178

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>emb|AJ511300.1|UBA511300 Uncultured bacterium partial dehI gene for putative halocarboxylic
           acid dehalogenase, clone AS-gDNA-4
          Length = 477

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 530 cgaggggcagacaggccggc 549
           ||||||||||||||||||||
Sbjct: 159 cgaggggcagacaggccggc 178

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>emb|AJ133461.1|PPU133461 Pseudomonas putida (strain PP3) dehIcryptic gene, partial
          Length = 492

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 530 cgaggggcagacaggccggc 549
           ||||||||||||||||||||
Sbjct: 174 cgaggggcagacaggccggc 193

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>emb|AJ133459.1|PSP133459 Pseudomonas sp. (strain K55) dehI gene, partial
          Length = 477

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 530 cgaggggcagacaggccggc 549
           ||||||||||||||||||||
Sbjct: 159 cgaggggcagacaggccggc 178

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>emb|AJ133457.1|PSP133457 Pseudomonas sp. (strain 17a) dehI gene, partial
          Length = 477

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 530 cgaggggcagacaggccggc 549
           ||||||||||||||||||||
Sbjct: 159 cgaggggcagacaggccggc 178

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>emb|AL121595.5|CNS01DRZ Human chromosome 14 DNA sequence BAC C-3225F7 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171535

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    catccattctcattgccttc 387
              ||||||||||||||||||||
Sbjct: 129942 catccattctcattgccttc 129923

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>emb|X14429.1|GDMYAL37 Gallus gallus MLC gene for embryonic myosin alkali light chain
           exons 3-7
          Length = 2909

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 agatggaaacgagacccaga 198
           ||||||||||||||||||||
Sbjct: 633 agatggaaacgagacccaga 652

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>gb|AF037332.1|AF037332 Homo sapiens Eph-like receptor tyrosine kinase hEphB1b (EphB1) mRNA,
            complete cds
          Length = 7261

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    attcggcacgaggaaaagcc 20
            ||||||||||||||||||||
Sbjct: 1419 attcggcacgaggaaaagcc 1400

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>emb|AL837522.8| Mouse DNA sequence from clone RP23-264L10 on chromosome 4, complete
             sequence
          Length = 128976

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   caccatctccagagtactgg 445
             ||||||||||||||||||||
Sbjct: 67102 caccatctccagagtactgg 67121

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>gb|AC002343.1|ATAC002343 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete
             sequence
          Length = 116156

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 465   gttcctcatcataacgaatg 484
             ||||||||||||||||||||
Sbjct: 59070 gttcctcatcataacgaatg 59089


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,008,087
Number of Sequences: 3902068
Number of extensions: 6008087
Number of successful extensions: 139019
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138754
Number of HSP's gapped (non-prelim): 262
length of query: 707
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 684
effective length of database: 17,143,297,704
effective search space: 11726015629536
effective search space used: 11726015629536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result