ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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Clone |
Length |
Accession No. |
nt | uniprot | TIGR-ORF | RAP-ORF | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | |||
| basd3e10 | 420 | AV922993 | not_full | emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for S-adenosylmethionine decarboxylase Length = 1893 | 129 | not_full | MOAC_STAS1 (Q49ZJ2) Molybdenum cofactor biosynthesis protein C Length = 162 | 6 | -- | --- | - | -- | --- | - |
| basd3e07 | 573 | AV922992 | not_full | gb|AY104121.1| Zea mays PCO141133 mRNA sequence Length = 815 | 140 | not_full | SUI1_ORYSA (P33278) Protein translation factor SUI1 homolog (GOS2 protein) Length = 115 | 47 | -- | --- | - | -- | --- | - |
| basd3e03 | 537 | AV922991 | not_full | ref|NM_192267.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1191 | 25 | full | Y3806_PSEAE (Q51385) Hypothetical UPF0063 protein PA3806 Length = 379 | 36 | -- | --- | - | -- | --- | - |
| basd3e02 | 569 | AV922990 | not_full | ref|XM_472744.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1209 | 188 | not_full | G3PA_MAIZE (P09315) Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) Length = 403 | 283 | -- | --- | - | -- | --- | - |
| basd3e01 | 300 | AV922989 | not_full | emb|X57408.1|TAPSB0 Wheat PsbO mRNA for 33kDa oxygen evolving protein of photosystem II Length = 1217 | 86 | not_full | PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 | 28 | -- | --- | - | -- | --- | - |
| basd3d24 | 630 | AV922988 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basd3d23 | 451 | AV922987 | not_full | dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes Length = 21245 | 93 | not_full | MATK_STYHA (Q9TK08) Maturase K (Intron maturase) Length = 509 | 2 | -- | --- | - | -- | --- | - |
| basd3d22 | 559 | AV922986 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 2 | -- | --- | - | -- | --- | - |
| basd3d21 | 573 | AV922985 | not_full | dbj|AB219969.1| Triticum aestivum WAP2 mRNA for aspartic proteinase, complete cds Length = 1560 | 100 | not_full | ASPRX_ORYSA (P42211) Aspartic proteinase precursor (EC 3.4.23.-) Length = 496 | 101 | -- | --- | - | -- | --- | - |
| basd3d20 | 615 | AV922984 | not_full | ref|XM_463995.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1046 | 51 | -- | --- | 0 | -- | --- | - | -- | --- | - |
| basd3d19 | 574 | AV922983 | not_full | gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 | 500 | not_full | CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase) (Choline acetylase) (ChAT) Length = 748 | 3 | -- | --- | - | -- | --- | - |
| basd3d16 | 571 | AV922982 | not_full | emb|X56547.1|HSBLT4 H. vulgare BLT4 mRNA Length = 724 | 500 | not_full | NLTP8_HORVU (Q43871) Nonspecific lipid-transfer protein Cw18 precursor (LTP Cw-18) (PKG2316) Length = 115 | 77 | -- | --- | - | -- | --- | - |
| basd3d14 | 562 | AV922981 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | POF13_SCHPO (O94334) F-box protein pof13 Length = 396 | 7 | -- | --- | - | -- | --- | - |
| basd3d13 | 187 | AV922980 | not_full | emb|AL591488.7| Mouse DNA sequence from clone RP23-36P22 on chromosome 2, complete sequence Length = 191494 | 27 | not_full | VNFA_AZOVI (P12627) Nitrogen fixation protein vnfA Length = 522 | 1 | -- | --- | - | -- | --- | - |
| basd3d12 | 644 | AV922979 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 6 | -- | --- | - | -- | --- | - |
| basd3d11 | 383 | AV922978 | not_full | dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes Length = 21245 | 75 | not_full | YB8B_YEAST (P38355) Protein YBR287W Length = 427 | 3 | -- | --- | - | -- | --- | - |
| basd3d10 | 561 | AV922977 | not_full | gb|AY103982.1| Zea mays PCO140262 mRNA sequence Length = 1929 | 89 | not_full | ASPRX_ORYSA (P42211) Aspartic proteinase precursor (EC 3.4.23.-) Length = 496 | 130 | -- | --- | - | -- | --- | - |
| basd3d08 | 594 | AV922976 | not_full | gb|AY137456.1| Hordeum vulgare subsp. vulgare ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; chloroplast gene for chloroplast product Length = 1589 | 500 | not_full | RBL_WHEAT (P11383) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) Length = 477 | 500 | -- | --- | - | -- | --- | - |
| basd3d07 | 617 | AV922975 | not_full | emb|X65871.1|HVSSYNMR H.vulgare mRNA for sucrose synthase Length = 2667 | 270 | not_full | SUS1_HORVU (P31922) Sucrose synthase 1 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 1) Length = 807 | 45 | -- | --- | - | -- | --- | - |
| basd3d06 | 534 | AV922974 | not_full | dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 | 189 | not_full | CHM1B_HUMAN (Q7LBR1) Charged multivesicular body protein 1b (Chromatin-modifying protein 1b) (CHMP1b) (CHMP1.5) (Vacuolar protein sorting 46-2) (Vps46-2) (hVps46-2) Length = 199 | 33 | -- | --- | - | -- | --- | - |
| basd3d04 | 578 | AV922973 | not_full | gb|AY037163.1| Homo sapiens ribosomal protein L15 mRNA, complete cds Length = 821 | 399 | not_full | RL15_ARATH (O23515) 60S ribosomal protein L15 Length = 204 | 80 | -- | --- | - | -- | --- | - |
| basd3d03 | 509 | AV922972 | not_full | emb|AL034351.1|HS879K22 Human DNA sequence from clone RP5-879K22 on chromosome 1q32.1-41 Contains part of the gene for melanoma antigen recognized by T cells 2 protein (MART2), complete sequence Length = 137678 | 76 | not_full | BROM1_ANACO (O23791) Bromelain precursor (EC 3.4.22.32) (Allergen Ana c 2) Length = 351 | 115 | -- | --- | - | -- | --- | - |
| basd3d02 | 653 | AV922971 | not_full | ref|NM_186138.2| Oryza sativa (japonica cultivar-group), mRNA Length = 958 | 290 | not_full | DR206_PEA (P13240) Disease resistance response protein 206 Length = 184 | 9 | -- | --- | - | -- | --- | - |
| basd3d01 | 676 | AV836274 | not_full | ref|XM_466871.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3530 | 23 | not_full | PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase) Length = 1021 | 170 | -- | --- | - | -- | --- | - |
| basd3c24 | 563 | AV836273 | not_full | gb|AY106391.1| Zea mays PCO123453 mRNA sequence Length = 1005 | 500 | not_full | Y284_METJA (Q57732) Hypothetical protein MJ0284 Length = 219 | 190 | -- | --- | - | -- | --- | - |
| basd3c23 | 425 | AV836272 | not_full | dbj|AK115607.1| Ciona intestinalis cDNA, clone:cilv007c23, full insert sequence Length = 678 | 29 | not_full | COHA1_MESAU (Q9JMH4) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2) (180 kDa bullous pemphigoid antigen 2) Length = 1431 | 6 | -- | --- | - | -- | --- | - |
| basd3c22 | 543 | AV836271 | not_full | ref|NM_194620.1| Oryza sativa (japonica cultivar-group) putative o-methyltransferase ZRP4 (OSJNBa0023I19.18), mRNA Length = 1101 | 37 | not_full | ZRP4_MAIZE (P47917) O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT) Length = 364 | 20 | -- | --- | - | -- | --- | - |
| basd3c21 | 566 | AV922970 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 5 | -- | --- | - | -- | --- | - |
| basd3c20 | 525 | AV922969 | not_full | gb|BT009448.1| Triticum aestivum clone wlmk8.pk0018.e8:fis, full insert mRNA sequence Length = 1560 | 119 | not_full | PAPS2_HUMAN (O95340) Bifunctional 3NULL-phosphoadenosine 5NULL-phosphosulfate synthetase 2 (PAPS synthetase 2) (PAPSS 2) (Sulfurylase kinase 2) (SK2) (SK 2) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfuryl | 16 | -- | --- | - | -- | --- | - |
| basd3c19 | 537 | AV922968 | not_full | dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 | 11 | not_full | TS101_RAT (Q6IRE4) Tumor susceptibility gene 101 protein Length = 391 | 10 | -- | --- | - | -- | --- | - |
| basd3c18 | 643 | AV922967 | not_full | dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 | 26 | not_full | HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor (Histidine-proline-rich glycoprotein) (HPRG) Length = 525 | 103 | -- | --- | - | -- | --- | - |
| basd3c17 | 542 | AV922966 | not_full | emb|X59983.1|BNRPS15A B.napus mRNA for ribosomal protein S15a (pPCB8) Length = 757 | 500 | not_full | RS15A_ARATH (P42798) 40S ribosomal protein S15a Length = 129 | 328 | -- | --- | - | -- | --- | - |
| basd3c16 | 644 | AV836270 | not_full | ref|XM_481458.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3030 | 98 | not_full | MRTFA_XENLA (Q8AYC2) Myocardin-related transcription factor A (MRTF-A) (xMRTF-A) Length = 936 | 7 | -- | --- | - | -- | --- | - |
| basd3c15 | 586 | AV922965 | not_full | gb|U76895.1|TAU76895 Triticum aestivum beta-tubulin 4 (Tubb4) mRNA, complete cds Length = 1866 | 500 | full | TBB4_WHEAT (Q9ZRA9) Tubulin beta-4 chain (Beta-4 tubulin) Length = 445 | 390 | -- | --- | - | -- | --- | - |
| basd3c12 | 626 | AV922964 | full | dbj|AB025597.1| Hordeum vulgare IDI1 mRNA, complete cds Length = 997 | 166 | not_full | ARD2_ORYSA (Q58FK4) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 (EC 1.13.-.-) (Aci-reductone dioxygenase 2) (Submergence-induced protein 2A) Length = 198 | 38 | -- | --- | - | -- | --- | - |
| basd3c10 | 629 | AV922963 | not_full | gb|AY104750.1| Zea mays PCO077049 mRNA sequence Length = 3244 | 48 | not_full | SYA_ARATH (P36428) Alanyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS) Length = 1003 | 278 | -- | --- | - | -- | --- | - |
| basd3c08 | 660 | AV922962 | not_full | gb|AF488730.1| Triticum aestivum small Ran-related GTP-binding protein mRNA, complete cds Length = 1055 | 500 | not_full | RAN_VICFA (P38548) GTP-binding nuclear protein Ran/TC4 Length = 221 | 500 | -- | --- | - | -- | --- | - |
| basd3c07 | 560 | AV922961 | not_full | emb|AJ310379.1|HVU310379 Hordeum vulgare mRNA for putative nuclear protein (s40 gene) Length = 417 | 94 | not_full | M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kinase kinase 4 (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK) (Nck-interacting kinase) Length = 1233 | 3 | -- | --- | - | -- | --- | - |
| basd3c06 | 644 | AV922960 | not_full | gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 | 54 | not_full | PANX2_HUMAN (Q96RD6) Pannexin-2 Length = 633 | 9 | -- | --- | - | -- | --- | - |
| basd3c05 | 442 | AV922959 | not_full | gb|AY106217.1| Zea mays PCO093522 mRNA sequence Length = 679 | 33 | full | MIOX_ORYSA (Q5Z8T3) Probable inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase) Length = 308 | 30 | -- | --- | - | -- | --- | - |
| basd3c04 | 570 | AV922958 | not_full | emb|Z21510.1|TATRINF4A T.aestivum translation initiation factor 4A Length = 1715 | 500 | full | IF4A_WHEAT (P41378) Eukaryotic initiation factor 4A (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A) (eIF-4A) Length = 414 | 500 | -- | --- | - | -- | --- | - |
| basd3c03 | 552 | AV922957 | not_full | dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 | 99 | -- | --- | 0 | -- | --- | - | -- | --- | - |
| basd3c02 | 610 | AV922956 | not_full | emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein Length = 575 | 127 | not_full | PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor Length = 138 | 12 | -- | --- | - | -- | --- | - |
| basd3b23 | 575 | AV922955 | not_full | ref|XM_470787.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1481 | 37 | not_full | POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1199 | 11 | -- | --- | - | -- | --- | - |
| basd3b20 | 196 | AV922954 | not_full | ref|XM_478627.1| Oryza sativa (japonica cultivar-group), mRNA Length = 847 | 61 | -- | --- | 0 | -- | --- | - | -- | --- | - |
| basd3b19 | 643 | AV922953 | not_full | gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07, complete sequence Length = 146712 | 75 | not_full | CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 | 347 | -- | --- | - | -- | --- | - |
| basd3b18 | 553 | AV922952 | not_full | gb|AY107912.1| Zea mays PCO105578 mRNA sequence Length = 749 | 500 | full | CYB5_ORYSA (P49100) Cytochrome b5 Length = 137 | 95 | -- | --- | - | -- | --- | - |
| basd3b16 | 440 | AV922951 | not_full | ref|XM_480492.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2090 | 97 | not_full | PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin) Length = 5183 | 15 | -- | --- | - | -- | --- | - |
| basd3b14 | 598 | AV922950 | not_full | gb|U69632.1|TAU69632 Triticum aestivum Cu/Zn superoxide dismutase (SOD1.2) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 781 | 233 | not_full | SODCP_ORYSA (P93407) Superoxide dismutase [Cu-Zn], chloroplast precursor (EC 1.15.1.1) Length = 211 | 192 | -- | --- | - | -- | --- | - |
| basd3b13 | 615 | AV922949 | not_full | dbj|AK102525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033096B18, full insert sequence Length = 1846 | 64 | not_full | NFE2_HUMAN (Q16621) Transcription factor NF-E2 45 kDa subunit (Nuclear factor, erythroid-derived 2 45 kDa subunit) (p45 NF-E2) (Leucine zipper protein NF-E2) Length = 373 | 23 | -- | --- | - | -- | --- | - |
