ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3c20 |
|---|---|
| Clone Library Name | barley_pub |
>PAPS2_HUMAN (O95340) Bifunctional 3'-phosphoadenosine 5'-phosphosulfate| synthetase 2 (PAPS synthetase 2) (PAPSS 2) (Sulfurylase kinase 2) (SK2) (SK 2) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfuryl Length = 614 Score = 74.3 bits (181), Expect = 2e-13 Identities = 31/49 (63%), Positives = 38/49 (77%) Frame = +1 Query: 25 FFEPSRSQDFLFISGTKMRTFAKTGENPPDGFMCPGGWKVLVDYYNSLQ 171 F++P+R +F FISGT+MR A+ GENPPDGFM P WKVL DYY SL+ Sbjct: 564 FYDPARHNEFDFISGTRMRKLAREGENPPDGFMAPKAWKVLTDYYRSLE 612
>PAPS2_MOUSE (O88428) Bifunctional 3'-phosphoadenosine 5'-phosphosulfate| synthetase 2 (PAPS synthetase 2) (PAPSS 2) (Sulfurylase kinase 2) (SK2) (SK 2) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfuryl Length = 621 Score = 73.2 bits (178), Expect = 4e-13 Identities = 30/49 (61%), Positives = 39/49 (79%) Frame = +1 Query: 25 FFEPSRSQDFLFISGTKMRTFAKTGENPPDGFMCPGGWKVLVDYYNSLQ 171 F++P+R ++F FISGT+MR A+ GE+PPDGFM P WKVL DYY SL+ Sbjct: 570 FYDPARHEEFDFISGTRMRKLAREGEDPPDGFMAPKAWKVLTDYYRSLE 618
>PAPSS_URECA (Q27128) Bifunctional 3'-phosphoadenosine 5'-phosphosulfate| synthetase (PAPS synthetase) (PAPSS) (Sulfurylase kinase) (SK) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase); Adenylyl-s Length = 610 Score = 69.3 bits (168), Expect = 6e-12 Identities = 26/47 (55%), Positives = 36/47 (76%) Frame = +1 Query: 25 FFEPSRSQDFLFISGTKMRTFAKTGENPPDGFMCPGGWKVLVDYYNS 165 F++P R +F+FISGTKMR A+ GE PP+GFM P WK++V+YY + Sbjct: 559 FYDPERHDEFMFISGTKMRGMARAGETPPNGFMAPSAWKIMVEYYKT 605
>PAPS1_MOUSE (Q60967) Bifunctional 3'-phosphoadenosine 5'-phosphosulfate| synthetase 1 (PAPS synthetase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1) (SK 1) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfuryl Length = 624 Score = 63.5 bits (153), Expect = 3e-10 Identities = 26/53 (49%), Positives = 36/53 (67%) Frame = +1 Query: 13 KEEAFFEPSRSQDFLFISGTKMRTFAKTGENPPDGFMCPGGWKVLVDYYNSLQ 171 K +++ +DF FISGT+MR A+ G+ PP+GFM P W VLV+YY SL+ Sbjct: 570 KRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLVEYYKSLE 622
>PAPS1_HUMAN (O43252) Bifunctional 3'-phosphoadenosine 5'-phosphosulfate| synthetase 1 (PAPS synthetase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1) (SK 1) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfuryl Length = 624 Score = 62.0 bits (149), Expect = 1e-09 Identities = 25/53 (47%), Positives = 35/53 (66%) Frame = +1 Query: 13 KEEAFFEPSRSQDFLFISGTKMRTFAKTGENPPDGFMCPGGWKVLVDYYNSLQ 171 K +++ +DF FISGT+MR A+ G+ PP+GFM P W VL +YY SL+ Sbjct: 570 KRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLTEYYKSLE 622
>PAPS1_CAVPO (O54820) Bifunctional 3'-phosphoadenosine 5'-phosphosulfate| synthetase 1 (PAPS synthetase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1) (SK 1) [Includes: Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfuryl Length = 624 Score = 62.0 bits (149), Expect = 1e-09 Identities = 25/55 (45%), Positives = 36/55 (65%) Frame = +1 Query: 7 RGKEEAFFEPSRSQDFLFISGTKMRTFAKTGENPPDGFMCPGGWKVLVDYYNSLQ 171 R K +++ +DF FISGT+MR A+ G+ PP+GFM P W VL +YY +L+ Sbjct: 568 RKKRMDYYDAEHHEDFEFISGTRMRRLAREGQKPPEGFMAPTAWAVLAEYYKALE 622
>SAT_CHRVI (O66036) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 397 Score = 38.9 bits (89), Expect = 0.009 Identities = 18/40 (45%), Positives = 25/40 (62%) Frame = +1 Query: 49 DFLFISGTKMRTFAKTGENPPDGFMCPGGWKVLVDYYNSL 168 DF+ +SGT++R GE PP F P ++L+DYY SL Sbjct: 355 DFIQLSGTRVREMLGQGEAPPPEFSRPEVAQILMDYYRSL 394
>SAT_ENTHI (O76156) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 423 Score = 33.5 bits (75), Expect = 0.36 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +1 Query: 34 PSRSQDFLFISGTKMRTFAKTGENPPDGFMCPGGWKVLVDYYNSL 168 P +D + +SGT +R G+ PD F K+L DYY L Sbjct: 359 PHTKKDRVIVSGTMVRKMLSEGKTLPDHFGRAESLKILADYYQHL 403
>SAT_PORYE (Q60FC6) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 419 Score = 32.7 bits (73), Expect = 0.62 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +1 Query: 61 ISGTKMRTFAKTGENPPDGFMCPGGWKVLVDYYNSLQTEGATA 189 ISG+KMR +G P M P +VL+DYY + + + ATA Sbjct: 378 ISGSKMREMLNSGSMPDSRVMRPATAQVLMDYY-AAKNKSATA 419
>SAT_PYRAB (P56863) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 379 Score = 30.8 bits (68), Expect = 2.4 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 61 ISGTKMRTFAKTGENPPDGFMCPGGWKVLVDYYN 162 ISGTK+R GE PP+ M P ++V+ + N Sbjct: 342 ISGTKLRNMIMRGEKPPEYMMRPEVYEVIRSFDN 375
>SAT_SYNY3 (P74241) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 390 Score = 30.4 bits (67), Expect = 3.1 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 34 PSRSQDFLFISGTKMRTFAKTGENPPDGFMCP 129 PS +D + +SGTK+R + G+ PP F P Sbjct: 345 PSGPEDRIHLSGTKVRALLRDGQLPPPEFSRP 376
>SAT2_BACSU (O06736) Probable sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 389 Score = 30.4 bits (67), Expect = 3.1 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +1 Query: 34 PSRSQDFLFISGTKMRTFAKTGENPPDGFMCPGGWKVLV 150 P +D + +SGTK+R + G+ PP F P VL+ Sbjct: 333 PHSPRDHIHLSGTKVRELLRQGKKPPKEFSRPEVAAVLI 371
>MDC1_RAT (Q5U2M8) Mediator of DNA damage checkpoint protein 1| Length = 1279 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +2 Query: 26 SSNLHAVKIFCSSQEPRCALSPKLERTLLMVSCALVG 136 S LH V I C+ PRCA++ +L LL L G Sbjct: 1225 SYKLHRVVITCTEDLPRCAIASRLGLPLLSPEFLLTG 1261
>AICDA_MOUSE (Q9WVE0) Activation-induced cytidine deaminase (EC 3.5.4.5)| (Cytidine aminohydrolase) Length = 198 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%) Frame = +2 Query: 362 CSNFFFQNRKRDFEAW---HRNSKLLT 433 C N F +NR+R F+AW H NS LT Sbjct: 147 CWNTFVENRERTFKAWEGLHENSVRLT 173
>SAT_DEIRA (P56864) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 387 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = +1 Query: 34 PSRSQDFLFISGTKMRTFAKTGENPPDGFMCPGGWKVLVDYY 159 P S L +SGTK+R + GEN P F P +VL Y Sbjct: 344 PHDSSHHLVLSGTKVREKLRAGENLPPEFTRPEVAEVLRKAY 385
>VU47_HHV6U (Q06093) Glycoprotein U47 precursor| Length = 651 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -2 Query: 476 HHTIMIKFTRLQLNLSTVLSSGAKLQNLSFYFERKNLNN 360 H T ++KFT Q + T +S ++QN++ F+R L + Sbjct: 443 HTTPILKFTTWQNTVRTYMSHNTEVQNMTDKFQRTTLKS 481 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,206,666 Number of Sequences: 219361 Number of extensions: 1069659 Number of successful extensions: 2313 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2263 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2313 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
