ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MOAC_STAS1 (Q49ZJ2) Molybdenum cofactor biosynthesis protein C 32 0.61
2ATG9_YEAST (Q12142) Autophagy-related protein 9 (Cytoplasm to va... 29 5.2
3PPR3D_HUMAN (O95685) Protein phosphatase 1 regulatory subunit 3D... 28 6.7
4TENS1_HUMAN (Q9HBL0) Tensin-1 28 8.8
5ARGC2_DEIRA (Q9RY72) N-acetyl-gamma-glutamyl-phosphate reductase... 28 8.8
6TENS1_BOVIN (Q9GLM4) Tensin-1 28 8.8

>MOAC_STAS1 (Q49ZJ2) Molybdenum cofactor biosynthesis protein C|
          Length = 162

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 257 AKSLAVVVP*CTKLPSATALKTFDQLEAQRSFLLHIQT 370
           AK+ A ++P C +LP      TFD  E ++S+ L+IQT
Sbjct: 66  AKNTADIIPMCHQLPLTGIDVTFDWQENEQSYTLNIQT 103



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>ATG9_YEAST (Q12142) Autophagy-related protein 9 (Cytoplasm to vacuole|
           targeting protein 7)
          Length = 997

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 256 HPLTPLEHSLRVPGKNWYGNPFPSAPTCSGSDLKN 152
           H ++P  +S R PGKNW  N        +G D+KN
Sbjct: 896 HNISPAIYSTRNPGKNWDNNN-------NGDDIKN 923



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>PPR3D_HUMAN (O95685) Protein phosphatase 1 regulatory subunit 3D (Protein|
           phosphatase 1, regulatory subunit 6) (Protein
           phosphatase 1-binding subunit R6)
          Length = 299

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 226 RVPGKNWYGNPFPSAPTCSGSDLKNSPLSRHRSRALPTSP 107
           R PG    G   P  P  SG D +  P+   R+R+LP+SP
Sbjct: 42  RPPGSP--GRAPPPTPAPSGCDPRLRPIILRRARSLPSSP 79



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>TENS1_HUMAN (Q9HBL0) Tensin-1|
          Length = 1735

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 244 PLEHSLRVPGKNWYGNPFPSAPTCSGSDLKNSPLSRHRSRALPT 113
           PL  S  VPG  W G    S+   SGS  ++ PL++ RS  +P+
Sbjct: 727 PLHKSQSVPGA-WPGASPLSSQPLSGSSRQSHPLTQSRSGYIPS 769



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>ARGC2_DEIRA (Q9RY72) N-acetyl-gamma-glutamyl-phosphate reductase 2 (EC|
           1.2.1.38) (AGPR 2) (N-acetyl-glutamate semialdehyde
           dehydrogenase 2) (NAGSA dehydrogenase 2)
          Length = 306

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +2

Query: 347 SFLLHIQTARRSHPDIXFGFP 409
           S LL   TA R HPD  FGFP
Sbjct: 76  SRLLDASTAHRIHPDWVFGFP 96



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>TENS1_BOVIN (Q9GLM4) Tensin-1|
          Length = 1715

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 244 PLEHSLRVPGKNWYGNPFPSAPTCSGSDLKNSPLSRHRSRALPT 113
           PL  S  VPG  W G    S+   SGS  ++ PL++ RS  +P+
Sbjct: 730 PLHKSQSVPGA-WPGASPLSSQPFSGSSCQSHPLTQSRSGYIPS 772


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,449,601
Number of Sequences: 219361
Number of extensions: 848491
Number of successful extensions: 2095
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2095
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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