ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3d13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VNFA_AZOVI (P12627) Nitrogen fixation protein vnfA 29 3.0

>VNFA_AZOVI (P12627) Nitrogen fixation protein vnfA|
          Length = 522

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 13  WPG*SRRLTIVVE--LYLEKDGSSHGRSLPGSL 105
           WPG  R L  V+E  + L +DG  HG  LP SL
Sbjct: 423 WPGNVRELENVIERAMLLSEDGVIHGYHLPPSL 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,811,553
Number of Sequences: 219361
Number of extensions: 384628
Number of successful extensions: 932
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 80,573,946
effective HSP length: 37
effective length of database: 72,457,589
effective search space used: 1738982136
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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