Clone Name
basd3e10
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Trit...
484
e-133
2 gb|BT018615.1| Zea mays clone EL01N0501D02.d mRNA sequence
188
1e-44
3 emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine deca...
180
2e-42
4 gb|AY103590.1| Zea mays PCO098412 mRNA sequence
180
2e-42
5 gb|BT016840.1| Zea mays clone Contig673 mRNA sequence
172
6e-40
6 emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine de...
165
1e-37
7 dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clon...
165
1e-37
8 dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clon...
165
1e-37
9 dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clon...
165
1e-37
10 dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clon...
165
1e-37
11 emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon...
135
1e-28
12 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
135
1e-28
13 emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon...
135
1e-28
14 emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,...
135
1e-28
15 emb|AJ252213.1|OSA252213 Oryza sativa partial adometDC1 gene for...
127
3e-26
16 gb|BT013082.1| Lycopersicon esculentum clone 114340R, mRNA sequence
117
3e-23
17 gb|AY103940.1| Zea mays PCO064624 mRNA sequence
109
7e-21
18 dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...
105
1e-19
19 dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D...
105
1e-19
20 dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1 g...
105
1e-19
21 dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clon...
105
1e-19
22 dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clon...
105
1e-19
23 dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clon...
105
1e-19
24 dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clon...
105
1e-19
25 ref|XM_506863.1| PREDICTED Oryza sativa (japonica cultivar-group...
100
7e-18
26 emb|Y07768.1|DSSADMEDC D.stramonium mRNA for S-adenosylmethionin...
100
7e-18
27 emb|AJ251899.1|OSA251899 Oryza sativa mRNA for S-adenosylmethion...
100
7e-18
28 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
100
7e-18
29 dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D...
100
7e-18
30 dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic D...
100
7e-18
31 emb|AJ252214.1|OSA252214 Oryza sativa partial adometDC2 gene for...
100
7e-18
32 dbj|AK070269.1| Oryza sativa (japonica cultivar-group) cDNA clon...
100
7e-18
33 dbj|AK070259.1| Oryza sativa (japonica cultivar-group) cDNA clon...
100
7e-18
34 ref|XM_466676.1| Oryza sativa (japonica cultivar-group), mRNA
96
1e-16
35 dbj|AK062133.1| Oryza sativa (japonica cultivar-group) cDNA clon...
96
1e-16
36 gb|AY536644.1| Brassica juncea S-adenosylmethionine decarboxylas...
94
4e-16
37 gb|AF321141.1|AF321141S1 Nicotiana tabacum S-adenosylmethionine ...
90
7e-15
38 gb|AY232672.1| Narcissus pseudonarcissus S-adenosylmethionine de...
90
7e-15
39 ref|NM_001035545.1| Arabidopsis thaliana SAMDC (S-ADENOSYLMETHIO...
82
2e-12
40 ref|NM_111114.2| Arabidopsis thaliana SAMDC (S-ADENOSYLMETHIONIN...
82
2e-12
41 gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence
82
2e-12
42 gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC...
82
2e-12
43 emb|Y07765.1|ATSADMEDC A.thaliana gene encoding S-adenosylmethio...
82
2e-12
44 gb|AF428468.1|AF428468 Arabidopsis thaliana AT3g02470/F16B3_10 m...
82
2e-12
45 gb|AY054185.1| Arabidopsis thaliana AT3g02470/F16B3_10 mRNA, com...
82
2e-12
46 gb|AY042824.1| Arabidopsis thaliana S-adenosylmethionine decarbo...
82
2e-12
47 gb|U63633.1|ATU63633 Arabidopsis thaliana S-adenosylmethionine d...
82
2e-12
48 gb|AY730047.1| Phaseolus vulgaris putative SAMDC uORF mRNA, comp...
76
1e-10
49 gb|S74514.1| S-adenosylmethionine decarboxylase [Solanum tuberos...
72
2e-09
50 dbj|AB077442.2| Malus x domestica SAMDC mRNA for S-adenosylmethi...
70
6e-09
51 gb|AY491510.2| Daucus carota S-adenosylmethionine decarboxylase ...
68
2e-08
52 gb|DQ415922.1| Cleome spinosa clone BAC Cs1, complete sequence
68
2e-08
53 gb|AY491511.1| Daucus carota S-adenosylmethionine decarboxylase ...
68
2e-08
54 emb|X95729.1|BJSAMDC1G B.juncea mRNA for S-adenosylmethionine de...
68
2e-08
55 gb|AF488307.1| Glycine max S-adenosylmethionine decarboxylase (S...
68
2e-08
56 gb|AF420239.1|AF420239 Dendrobium crumenatum S-adenosyl-L-methio...
68
2e-08
57 gb|AY444341.1| Brassica juncea S-adenosyl-L-methionine decarboxy...
68
2e-08
58 gb|AF334029.1|AF334029 Daucus carota S-adenosyl-methionine decar...
68
2e-08
59 gb|AF215665.1|AF215665 Brassica juncea S-adenosyl-L-methionine d...
68
2e-08
60 gb|U80916.1|BJU80916 Brassica juncea S-adenosyl-L-methionine dec...
68
2e-08
61 dbj|AB062360.1| Phaseolus lunatus SAMDC mRNA for S-adenosylmethi...
68
2e-08
62 gb|U12573.1|CRU12573 Catharanthus roseus S-adenosyl-L-methionine...
66
1e-07
63 emb|AJ704800.1| Prunus persica partial samdc gene for S-adenosyl...
62
2e-06
64 gb|AF033100.1|AF033100 Nicotiana tabacum S-adenosylmethionine de...
60
6e-06
65 gb|AY104070.1| Zea mays PCO115703 mRNA sequence
54
4e-04
66 ref|NM_001036811.1| Arabidopsis thaliana adenosylmethionine deca...
52
0.001
67 ref|NM_121600.2| Arabidopsis thaliana adenosylmethionine decarbo...
52
0.001
68 gb|BT013281.1| Lycopersicon esculentum clone 134862F, mRNA sequence
52
0.001
69 emb|AL391145.1|ATF1N13 Arabidopsis thaliana DNA chromosome 5, BA...
52
0.001
70 emb|AJ252212.1|ATH252212 Arabidopsis thaliana adometDC2 gene for...
52
0.001
71 emb|AJ251915.1|ATH251915 Arabidopsis thaliana mRNA for S-adenosy...
52
0.001
72 gb|U60592.1|PSU60592 Pisum sativum putative ORF; conserved in 5'...
52
0.001
73 gb|AF436825.1|AF436825 Arabidopsis thaliana AT5g15950/F1N13_90 m...
52
0.001
74 gb|U38527.1|DCU38527 Dianthus caryophyllus S-adenosylmethionine ...
52
0.001
75 emb|AJ567368.2|VVI567368 Vitis vinifera samdc gene for S-adenosy...
52
0.001
76 gb|BT013882.1| Lycopersicon esculentum clone 132862F, mRNA sequence
46
0.091
77 dbj|AB077441.2| Malus x domestica SAMDC mRNA for S-adenosylmethi...
46
0.091
78 gb|U94786.1|DCU94786 Dianthus caryophyllus S-adenosylmethionine ...
46
0.091
79 gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14...
44
0.36
80 gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial c...
44
0.36
81 gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome...
44
0.36
82 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.36
83 dbj|AK102034.1| Oryza sativa (japonica cultivar-group) cDNA clon...
44
0.36
84 dbj|AK099362.1| Oryza sativa (japonica cultivar-group) cDNA clon...
44
0.36
85 emb|CT573229.8| Zebrafish DNA sequence from clone DKEY-11D7 in l...
44
0.36
86 dbj|AK064360.1| Oryza sativa (japonica cultivar-group) cDNA clon...
44
0.36
87 tpe|BN000595.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr...
44
0.36
88 dbj|AK016582.1| Mus musculus adult male testis cDNA, RIKEN full-...
42
1.4
89 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
42
1.4
90 emb|AL596265.12| Mouse DNA sequence from clone RP23-134O19 on ch...
42
1.4
91 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
42
1.4
92 emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa...
42
1.4
93 ref|XM_476068.1| Oryza sativa (japonica cultivar-group), predic...
40
5.6
94 ref|NM_113454.2| Arabidopsis thaliana adenosylmethionine decarbo...
40
5.6
95 gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome...
40
5.6
96 gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome...
40
5.6
97 gb|AY022835.1| Oryza sativa microsatellite MRG5160 containing (C...
40
5.6
98 gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome...
40
5.6
99 gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome...
40
5.6
100 gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome...
40
5.6
101 gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom...
40
5.6
102 gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 1...
40
5.6
103 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
40
5.6
104 gb|AY339884.1| Zea mays WD40 repeat protein (mp1) gene, complete...
40
5.6
105 ref|NM_031220.1| Homo sapiens PITPNM family member 3 (PITPNM3), ...
40
5.6
106 emb|Z82204.1|HS362G17 Human DNA sequence from clone RP3-362G17 o...
40
5.6
107 gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome...
40
5.6
108 gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete seq...
40
5.6
109 gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 gen...
40
5.6
110 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
40
5.6
111 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
40
5.6
112 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
40
5.6
113 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
40
5.6
114 emb|BX823121.1|CNS0A7A6 Arabidopsis thaliana Full-length cDNA Co...
40
5.6
115 gb|AF334586.1|AF334586 Homo sapiens NIR1 mRNA, complete cds
40
5.6
116 dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic D...
40
5.6
117 dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic D...
40
5.6
118 dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic D...
40
5.6
119 dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic D...
40
5.6
120 dbj|AB025639.1| Arabidopsis thaliana genomic DNA, chromosome 3, ...
40
5.6
121 dbj|AK121556.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
5.6
122 dbj|AK106389.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
5.6
123 dbj|AK105900.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
5.6
124 dbj|AK067998.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
5.6
125 dbj|AK065299.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
5.6
126 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
40
5.6
127 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
40
5.6
128 dbj|AP006372.1| Lotus japonicus genomic DNA, chromosome 1, clone...
40
5.6
129 gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome...
40
5.6
>emb| X83881.1 |HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for
S-adenosylmethionine decarboxylase
Length = 1893
Score = 484 bits (244), Expect = e-133
Identities = 296/311 (95%), Gaps = 2/311 (0%)
Strand = Plus / Plus
Query: 110 actcgtcgggagggctcgagatctgtgtcgggagaggggggaattcttgagatcggaacc 169
|||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct: 65 actcgtcgggagagctcgagatctgtgccgggagagggggga-ttcttgagatcggaatc 123
Query: 170 ggaacaagtgggcgcgctcgggaaggggttaccataccaatttttcccaggaacccttag 229
||| |||| | ||||||||||||||||||||||||| ||| |||||||||||| ||||||
Sbjct: 124 ggatcaagcgtgcgcgctcgggaaggggttaccataacaaattttcccaggaatccttag 183
Query: 230 tgaatgttctaatggagtcaaagggtggcaaaaagtctagcagtagtagttccctgatgt 289
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 184 tgaatgttctaatggagtcaaagggtggcaagaagtctagcagtagtagttccctgatgt 243
Query: 290 acgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaagaagt 349
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 244 acgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgccaagaagt 303
Query: 350 tttctgctgcatattcaaactgcgcgaagaagccatcctgatatcgnttttggctttccc 409
||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 304 tttctgctgcatactcaaactgcgcgaagaagccatcctgatatcgtttttggc-ttccc 362
Query: 410 cttcccgtagt 420
|||||||||||
Sbjct: 363 cttcccgtagt 373
Score = 44.1 bits (22), Expect = 0.36
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 accgcctcgccgccgccaccgcagcc 76
|||| |||||||||||||||||||||
Sbjct: 10 accgtctcgccgccgccaccgcagcc 35
>gb| BT018615.1 | Zea mays clone EL01N0501D02.d mRNA sequence
Length = 2057
Score = 188 bits (95), Expect = 1e-44
Identities = 156/176 (88%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 233 atgttctaatggagtcaaagggtggcaaaaagtctagcagtagtagttccctgatgtacg 292
|||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct: 217 atgtactaatggagtctaagggtggcaaaaagtctagcagtagtcgttccatgatgtatg 276
Query: 293 aagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaagaagtt-- 350
|||||||||| |||||||||||||| ||||||||||| || ||||||| ||||||||
Sbjct: 277 aagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaagaagttcc 336
Query: 351 -ttctgctgcatattcaaactgcgcgaagaagccatcctgatatcgnttttggctt 405
|||||||| || || |||||||||||||||||||||||||||| |||||||||
Sbjct: 337 agtctgctgcttactccaactgcgcgaagaagccatcctgatatcccttttggctt 392
>emb| Y07767.1 |ZMSADMEDC Z.mays mRNA for S-adenosylmethionine decarboxylase
Length = 1873
Score = 180 bits (91), Expect = 2e-42
Identities = 155/176 (88%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 233 atgttctaatggagtcaaagggtggcaaaaagtctagcagtagtagttccctgatgtacg 292
|||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |
Sbjct: 38 atgtactaatggagtctaagggtggcaaaaagtctagcagtagtcgttctatgatgtatg 97
Query: 293 aagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaagaagtt-- 350
|||||||||| |||||||||||||| ||||||||||| || ||||||| ||||||||
Sbjct: 98 aagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaagaagttcc 157
Query: 351 -ttctgctgcatattcaaactgcgcgaagaagccatcctgatatcgnttttggctt 405
|||||||| || || |||||||||||||||||||||||||||| |||||||||
Sbjct: 158 agtctgctgcttactccaactgcgcgaagaagccatcctgatatcccttttggctt 213
>gb| AY103590.1 | Zea mays PCO098412 mRNA sequence
Length = 2400
Score = 180 bits (91), Expect = 2e-42
Identities = 155/176 (88%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 233 atgttctaatggagtcaaagggtggcaaaaagtctagcagtagtagttccctgatgtacg 292
|||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |
Sbjct: 287 atgtactaatggagtctaagggtggcaaaaagtctagcagtagtcgttctatgatgtatg 346
Query: 293 aagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaagaagtt-- 350
|||||||||| |||||||||||||| ||||||||||| || ||||||| ||||||||
Sbjct: 347 aagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaagaagttcc 406
Query: 351 -ttctgctgcatattcaaactgcgcgaagaagccatcctgatatcgnttttggctt 405
|||||||| || || |||||||||||||||||||||||||||| |||||||||
Sbjct: 407 agtctgctgcttactccaactgcgcgaagaagccatcctgatatcccttttggctt 462
>gb| BT016840.1 | Zea mays clone Contig673 mRNA sequence
Length = 1866
Score = 172 bits (87), Expect = 6e-40
Identities = 154/176 (87%), Gaps = 3/176 (1%)
Strand = Plus / Minus
Query: 233 atgttctaatggagtcaaagggtggcaaaaagtctagcagtagtagttccctgatgtacg 292
|||| ||||||||||| |||||||||| |||| ||||||||||| ||||| ||||||| |
Sbjct: 1860 atgtactaatggagtctaagggtggcataaagactagcagtagtcgttccatgatgtatg 1801
Query: 293 aagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaagaagtt-- 350
|||||||||| |||||||||||||| ||||||||||| || ||||||| ||||||||
Sbjct: 1800 aagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaagaagttcc 1741
Query: 351 -ttctgctgcatattcaaactgcgcgaagaagccatcctgatatcgnttttggctt 405
|||||||| || || |||||||||||||||||||||||||||| |||||||||
Sbjct: 1740 agtctgctgcttactccaactgcgcgaagaagccatcctgatatcccttttggctt 1685
>emb| Y07766.2 |OSSADMEDC O.sativa mRNA for S-adenosylmethionine decarboxylase
Length = 2036
Score = 165 bits (83), Expect = 1e-37
Identities = 150/171 (87%), Gaps = 6/171 (3%)
Strand = Plus / Plus
Query: 228 agtgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccct 284
|||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 192 agtggatgtactaatggagtcaaagggtggcaaaaagaagtctagcagtagtcgttcctt 251
Query: 285 gatgtacgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaa 344
|||||| ||||||||||| |||||||||||||| ||||||||||| || ||||||| ||
Sbjct: 252 gatgtatgaagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaa 311
Query: 345 gaagtt---ttctgctgcatattcaaactgcgcgaagaagccatcctgata 392
|||||| |||||||| || || ||||||||||||||||||||||||||
Sbjct: 312 gaagttccagtctgctgcttactccaactgcgcgaagaagccatcctgata 362
>dbj| AK100589.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023106D22, full
insert sequence
Length = 2063
Score = 165 bits (83), Expect = 1e-37
Identities = 150/171 (87%), Gaps = 6/171 (3%)
Strand = Plus / Plus
Query: 228 agtgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccct 284
|||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 236 agtggatgtactaatggagtcaaagggtggcaaaaagaagtctagcagtagtcgttcctt 295
Query: 285 gatgtacgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaa 344
|||||| ||||||||||| |||||||||||||| ||||||||||| || ||||||| ||
Sbjct: 296 gatgtatgaagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaa 355
Query: 345 gaagtt---ttctgctgcatattcaaactgcgcgaagaagccatcctgata 392
|||||| |||||||| || || ||||||||||||||||||||||||||
Sbjct: 356 gaagttccagtctgctgcttactccaactgcgcgaagaagccatcctgata 406
>dbj| AK098918.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013002M21, full
insert sequence
Length = 2059
Score = 165 bits (83), Expect = 1e-37
Identities = 150/171 (87%), Gaps = 6/171 (3%)
Strand = Plus / Plus
Query: 228 agtgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccct 284
|||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 236 agtggatgtactaatggagtcaaagggtggcaaaaagaagtctagcagtagtcgttcctt 295
Query: 285 gatgtacgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaa 344
|||||| ||||||||||| |||||||||||||| ||||||||||| || ||||||| ||
Sbjct: 296 gatgtatgaagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaa 355
Query: 345 gaagtt---ttctgctgcatattcaaactgcgcgaagaagccatcctgata 392
|||||| |||||||| || || ||||||||||||||||||||||||||
Sbjct: 356 gaagttccagtctgctgcttactccaactgcgcgaagaagccatcctgata 406
>dbj| AK072162.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full
insert sequence
Length = 2711
Score = 165 bits (83), Expect = 1e-37
Identities = 150/171 (87%), Gaps = 6/171 (3%)
Strand = Plus / Plus
Query: 228 agtgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccct 284
|||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 236 agtggatgtactaatggagtcaaagggtggcaaaaagaagtctagcagtagtcgttcctt 295
Query: 285 gatgtacgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaa 344
|||||| ||||||||||| |||||||||||||| ||||||||||| || ||||||| ||
Sbjct: 296 gatgtatgaagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaa 355
Query: 345 gaagtt---ttctgctgcatattcaaactgcgcgaagaagccatcctgata 392
|||||| |||||||| || || ||||||||||||||||||||||||||
Sbjct: 356 gaagttccagtctgctgcttactccaactgcgcgaagaagccatcctgata 406
>dbj| AK067166.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013096P09, full
insert sequence
Length = 2063
Score = 165 bits (83), Expect = 1e-37
Identities = 150/171 (87%), Gaps = 6/171 (3%)
Strand = Plus / Plus
Query: 228 agtgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccct 284
|||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 236 agtggatgtactaatggagtcaaagggtggcaaaaagaagtctagcagtagtcgttcctt 295
Query: 285 gatgtacgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaa 344
|||||| ||||||||||| |||||||||||||| ||||||||||| || ||||||| ||
Sbjct: 296 gatgtatgaagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaa 355
Query: 345 gaagtt---ttctgctgcatattcaaactgcgcgaagaagccatcctgata 392
|||||| |||||||| || || ||||||||||||||||||||||||||
Sbjct: 356 gaagttccagtctgctgcttactccaactgcgcgaagaagccatcctgata 406
>emb| AL606594.4 | Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
complete sequence
Length = 173171
Score = 135 bits (68), Expect = 1e-28
Identities = 112/126 (88%), Gaps = 3/126 (2%)
Strand = Plus / Plus
Query: 228 agtgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccct 284
|||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 12050 agtggatgtactaatggagtcaaagggtggcaaaaagaagtctagcagtagtcgttcctt 12109
Query: 285 gatgtacgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaa 344
|||||| ||||||||||| |||||||||||||| ||||||||||| || ||||||| ||
Sbjct: 12110 gatgtatgaagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaa 12169
Query: 345 gaagtt 350
||||||
Sbjct: 12170 gaagtt 12175
Score = 46.1 bits (23), Expect = 0.091
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 370 tgcgcgaagaagccatcctgata 392
|||||||||||||||||||||||
Sbjct: 12281 tgcgcgaagaagccatcctgata 12303
>dbj| AP008210.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 135 bits (68), Expect = 1e-28
Identities = 112/126 (88%), Gaps = 3/126 (2%)
Strand = Plus / Plus
Query: 228 agtgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccct 284
|||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 24891465 agtggatgtactaatggagtcaaagggtggcaaaaagaagtctagcagtagtcgttcctt 24891524
Query: 285 gatgtacgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaa 344
|||||| ||||||||||| |||||||||||||| ||||||||||| || ||||||| ||
Sbjct: 24891525 gatgtatgaagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaa 24891584
Query: 345 gaagtt 350
||||||
Sbjct: 24891585 gaagtt 24891590
Score = 46.1 bits (23), Expect = 0.091
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 370 tgcgcgaagaagccatcctgata 392
|||||||||||||||||||||||
Sbjct: 24891696 tgcgcgaagaagccatcctgata 24891718
>emb| AL442115.2 | Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
sequence
Length = 148644
Score = 135 bits (68), Expect = 1e-28
Identities = 112/126 (88%), Gaps = 3/126 (2%)
Strand = Plus / Plus
Query: 228 agtgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccct 284
|||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 12079 agtggatgtactaatggagtcaaagggtggcaaaaagaagtctagcagtagtcgttcctt 12138
Query: 285 gatgtacgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaa 344
|||||| ||||||||||| |||||||||||||| ||||||||||| || ||||||| ||
Sbjct: 12139 gatgtatgaagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaa 12198
Query: 345 gaagtt 350
||||||
Sbjct: 12199 gaagtt 12204
Score = 46.1 bits (23), Expect = 0.091
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 370 tgcgcgaagaagccatcctgata 392
|||||||||||||||||||||||
Sbjct: 12310 tgcgcgaagaagccatcctgata 12332
>emb| AL606627.3 |OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
complete sequence
Length = 170765
Score = 135 bits (68), Expect = 1e-28
Identities = 112/126 (88%), Gaps = 3/126 (2%)
Strand = Plus / Plus
Query: 228 agtgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccct 284
|||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 153181 agtggatgtactaatggagtcaaagggtggcaaaaagaagtctagcagtagtcgttcctt 153240
Query: 285 gatgtacgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaa 344
|||||| ||||||||||| |||||||||||||| ||||||||||| || ||||||| ||
Sbjct: 153241 gatgtatgaagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaa 153300
Query: 345 gaagtt 350
||||||
Sbjct: 153301 gaagtt 153306
Score = 46.1 bits (23), Expect = 0.091
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 370 tgcgcgaagaagccatcctgata 392
|||||||||||||||||||||||
Sbjct: 153412 tgcgcgaagaagccatcctgata 153434
>emb| AJ252213.1 |OSA252213 Oryza sativa partial adometDC1 gene for S-adenosylmethionine
decarboxylase 1, exons 1-3
Length = 2036
Score = 127 bits (64), Expect = 3e-26
Identities = 111/126 (88%), Gaps = 3/126 (2%)
Strand = Plus / Plus
Query: 228 agtgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccct 284
|||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 1097 agtggatgtactaatggagtcaaagggtggcaaaaagaagtctagcagtagtcgttcctt 1156
Query: 285 gatgtacgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaaa 344
|||||| | ||||||||| |||||||||||||| ||||||||||| || ||||||| ||
Sbjct: 1157 gatgtatgtagctccccttggctacagcattgaggacgttcgacctgccggaggcgtgaa 1216
Query: 345 gaagtt 350
||||||
Sbjct: 1217 gaagtt 1222
Score = 46.1 bits (23), Expect = 0.091
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 370 tgcgcgaagaagccatcctgata 392
|||||||||||||||||||||||
Sbjct: 1328 tgcgcgaagaagccatcctgata 1350
>gb| BT013082.1 | Lycopersicon esculentum clone 114340R, mRNA sequence
Length = 380
Score = 117 bits (59), Expect = 3e-23
Identities = 94/105 (89%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 229 gtgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccctg 285
||||||| ||||||||||||||| ||||| |||||| ||||| |||||||||||| |
Sbjct: 152 gtgaatgatctaatggagtcaaaaggtggtaaaaagaagtctagtagtagtagttcctta 211
Query: 286 atgtacgaagctcccctcggctacagcattgaagacgttcgacca 330
| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ttttacgaagctcccctcggctacagcattgaagacgttcgacca 256
>gb| AY103940.1 | Zea mays PCO064624 mRNA sequence
Length = 2008
Score = 109 bits (55), Expect = 7e-21
Identities = 143/171 (83%), Gaps = 6/171 (3%)
Strand = Plus / Plus
Query: 230 tgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttcc---c 283
||||||||||||||||||| ||||||||||| ||| |||||||||||| ||||| |
Sbjct: 208 tgaatgttctaatggagtccaagggtggcaagaagaagtctagcagtagtcgttcctccc 267
Query: 284 tgatgtacgaagctcccctcggctacagcattgaagacgttcgaccagctggaggcgcaa 343
||||||||||||||||||| ||||||||||| || || | || || || || ||| |
Sbjct: 268 tgatgtacgaagctccccttggctacagcatcgaggatatccgccctgcaggcggcatca 327
Query: 344 agaagttttctgctgcatattcaaactgcgcgaagaagccatcctgatatc 394
||||||| || ||||| || || |||||||||| |||||||||||||||||
Sbjct: 328 agaagttctccgctgcttactcgaactgcgcgaggaagccatcctgatatc 378
>dbj| AP008215.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 105 bits (53), Expect = 1e-19
Identities = 96/109 (88%), Gaps = 6/109 (5%)
Strand = Plus / Minus
Query: 233 atgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccctgatgt 289
||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 15332978 atgttctaatggagtcaaaaggtggcaaaaagaagtctagcagtagtagttcc---atgt 15332922
Query: 290 acgaagctcccctcggctacagcattgaagacgttcgaccagctggagg 338
||||||||||||| ||||||| ||||| |||||||| ||||| |||||
Sbjct: 15332921 acgaagctcccctaggctacaagattgaggacgttcgcccagccggagg 15332873
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 8613491 cgcctcgccgccgccaccgc 8613472
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 2539236 cgcctcgccgccgccaccgc 2539255
>dbj| AP005420.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0418B08
Length = 165909
Score = 105 bits (53), Expect = 1e-19
Identities = 96/109 (88%), Gaps = 6/109 (5%)
Strand = Plus / Minus
Query: 233 atgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccctgatgt 289
||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 112167 atgttctaatggagtcaaaaggtggcaaaaagaagtctagcagtagtagttcc---atgt 112111
Query: 290 acgaagctcccctcggctacagcattgaagacgttcgaccagctggagg 338
||||||||||||| ||||||| ||||| |||||||| ||||| |||||
Sbjct: 112110 acgaagctcccctaggctacaagattgaggacgttcgcccagccggagg 112062
>dbj| AB122089.1 | Oryza sativa (japonica cultivar-group) SAMDC1 gene for
S-adenosylmethionine decarboxylase, complete cds
Length = 2952
Score = 105 bits (53), Expect = 1e-19
Identities = 96/109 (88%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 233 atgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccctgatgt 289
||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 1014 atgttctaatggagtcaaaaggtggcaaaaagaagtctagcagtagtagttcc---atgt 1070
Query: 290 acgaagctcccctcggctacagcattgaagacgttcgaccagctggagg 338
||||||||||||| ||||||| ||||| |||||||| ||||| |||||
Sbjct: 1071 acgaagctcccctaggctacaagattgaggacgttcgcccagccggagg 1119
>dbj| AK102445.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full
insert sequence
Length = 2047
Score = 105 bits (53), Expect = 1e-19
Identities = 96/109 (88%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 233 atgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccctgatgt 289
||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 217 atgttctaatggagtcaaaaggtggcaaaaagaagtctagcagtagtagttcc---atgt 273
Query: 290 acgaagctcccctcggctacagcattgaagacgttcgaccagctggagg 338
||||||||||||| ||||||| ||||| |||||||| ||||| |||||
Sbjct: 274 acgaagctcccctaggctacaagattgaggacgttcgcccagccggagg 322
>dbj| AK101535.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033048C18, full
insert sequence
Length = 2002
Score = 105 bits (53), Expect = 1e-19
Identities = 96/109 (88%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 233 atgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccctgatgt 289
||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 218 atgttctaatggagtcaaaaggtggcaaaaagaagtctagcagtagtagttcc---atgt 274
Query: 290 acgaagctcccctcggctacagcattgaagacgttcgaccagctggagg 338
||||||||||||| ||||||| ||||| |||||||| ||||| |||||
Sbjct: 275 acgaagctcccctaggctacaagattgaggacgttcgcccagccggagg 323
>dbj| AK100397.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023086M03, full
insert sequence
Length = 2546
Score = 105 bits (53), Expect = 1e-19
Identities = 96/109 (88%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 233 atgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccctgatgt 289
||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 743 atgttctaatggagtcaaaaggtggcaaaaagaagtctagcagtagtagttcc---atgt 799
Query: 290 acgaagctcccctcggctacagcattgaagacgttcgaccagctggagg 338
||||||||||||| ||||||| ||||| |||||||| ||||| |||||
Sbjct: 800 acgaagctcccctaggctacaagattgaggacgttcgcccagccggagg 848
>dbj| AK067682.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013116D10, full
insert sequence
Length = 2034
Score = 105 bits (53), Expect = 1e-19
Identities = 96/109 (88%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 233 atgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccctgatgt 289
||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 217 atgttctaatggagtcaaaaggtggcaaaaagaagtctagcagtagtagttcc---atgt 273
Query: 290 acgaagctcccctcggctacagcattgaagacgttcgaccagctggagg 338
||||||||||||| ||||||| ||||| |||||||| ||||| |||||
Sbjct: 274 acgaagctcccctaggctacaagattgaggacgttcgcccagccggagg 322
>ref| XM_506863.1 | PREDICTED Oryza sativa (japonica cultivar-group), OJ1476_F05.33
mRNA
Length = 1982
Score = 99.6 bits (50), Expect = 7e-18
Identities = 78/86 (90%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 238 ctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttcc---ctgatgtac 291
||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 231 ctaatggagtccaagggtggcaaaaagaagtctagcagtagtcgttcctccctgatgtac 290
Query: 292 gaagctcccctcggctacagcattga 317
||||||||||||||||||||||||||
Sbjct: 291 gaagctcccctcggctacagcattga 316
>emb| Y07768.1 |DSSADMEDC D.stramonium mRNA for S-adenosylmethionine decarboxylase
Length = 1839
Score = 99.6 bits (50), Expect = 7e-18
Identities = 89/102 (87%)
Strand = Plus / Plus
Query: 229 gtgaatgttctaatggagtcaaagggtggcaaaaagtctagcagtagtagttccctgatg 288
||||||| ||||||||||||||| ||||| |||||| |||||||||||| | |
Sbjct: 133 gtgaatgatctaatggagtcaaaaggtgggaaaaagaagtctagtagtagttccttattt 192
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcgacca 330
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tacgaagctcccctcggctacagcattgaagacgttcgacca 234
>emb| AJ251899.1 |OSA251899 Oryza sativa mRNA for S-adenosylmethionine decarboxylase 2
(adometDC2 gene)
Length = 1971
Score = 99.6 bits (50), Expect = 7e-18
Identities = 78/86 (90%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 238 ctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttcc---ctgatgtac 291
||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 217 ctaatggagtccaagggtggcaaaaagaagtctagcagtagtcgttcctccctgatgtac 276
Query: 292 gaagctcccctcggctacagcattga 317
||||||||||||||||||||||||||
Sbjct: 277 gaagctcccctcggctacagcattga 302
>dbj| AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 99.6 bits (50), Expect = 7e-18
Identities = 78/86 (90%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 238 ctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttcc---ctgatgtac 291
||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 24065827 ctaatggagtccaagggtggcaaaaagaagtctagcagtagtcgttcctccctgatgtac 24065886
Query: 292 gaagctcccctcggctacagcattga 317
||||||||||||||||||||||||||
Sbjct: 24065887 gaagctcccctcggctacagcattga 24065912
>dbj| AP005286.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1004_A05
Length = 174290
Score = 99.6 bits (50), Expect = 7e-18
Identities = 78/86 (90%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 238 ctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttcc---ctgatgtac 291
||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 24568 ctaatggagtccaagggtggcaaaaagaagtctagcagtagtcgttcctccctgatgtac 24627
Query: 292 gaagctcccctcggctacagcattga 317
||||||||||||||||||||||||||
Sbjct: 24628 gaagctcccctcggctacagcattga 24653
>dbj| AP004063.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1476_F05
Length = 125426
Score = 99.6 bits (50), Expect = 7e-18
Identities = 78/86 (90%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 238 ctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttcc---ctgatgtac 291
||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 100865 ctaatggagtccaagggtggcaaaaagaagtctagcagtagtcgttcctccctgatgtac 100924
Query: 292 gaagctcccctcggctacagcattga 317
||||||||||||||||||||||||||
Sbjct: 100925 gaagctcccctcggctacagcattga 100950
>emb| AJ252214.1 |OSA252214 Oryza sativa partial adometDC2 gene for S-adenosylmethionine
decarboxylase 2, exons 1-3
Length = 1721
Score = 99.6 bits (50), Expect = 7e-18
Identities = 78/86 (90%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 238 ctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttcc---ctgatgtac 291
||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 1129 ctaatggagtccaagggtggcaaaaagaagtctagcagtagtcgttcctccctgatgtac 1188
Query: 292 gaagctcccctcggctacagcattga 317
||||||||||||||||||||||||||
Sbjct: 1189 gaagctcccctcggctacagcattga 1214
>dbj| AK070269.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023047N04, full
insert sequence
Length = 1182
Score = 99.6 bits (50), Expect = 7e-18
Identities = 78/86 (90%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 238 ctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttcc---ctgatgtac 291
||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 228 ctaatggagtccaagggtggcaaaaagaagtctagcagtagtcgttcctccctgatgtac 287
Query: 292 gaagctcccctcggctacagcattga 317
||||||||||||||||||||||||||
Sbjct: 288 gaagctcccctcggctacagcattga 313
>dbj| AK070259.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023041P13, full
insert sequence
Length = 1982
Score = 99.6 bits (50), Expect = 7e-18
Identities = 78/86 (90%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 238 ctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttcc---ctgatgtac 291
||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 231 ctaatggagtccaagggtggcaaaaagaagtctagcagtagtcgttcctccctgatgtac 290
Query: 292 gaagctcccctcggctacagcattga 317
||||||||||||||||||||||||||
Sbjct: 291 gaagctcccctcggctacagcattga 316
>ref| XM_466676.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 1750
Score = 95.6 bits (48), Expect = 1e-16
Identities = 76/84 (90%), Gaps = 6/84 (7%)
Strand = Plus / Plus
Query: 240 aatggagtcaaagggtggcaaaaag---tctagcagtagtagttcc---ctgatgtacga 293
||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct: 1 aatggagtccaagggtggcaaaaagaagtctagcagtagtcgttcctccctgatgtacga 60
Query: 294 agctcccctcggctacagcattga 317
||||||||||||||||||||||||
Sbjct: 61 agctcccctcggctacagcattga 84
>dbj| AK062133.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-045-E08, full
insert sequence
Length = 1750
Score = 95.6 bits (48), Expect = 1e-16
Identities = 76/84 (90%), Gaps = 6/84 (7%)
Strand = Plus / Plus
Query: 240 aatggagtcaaagggtggcaaaaag---tctagcagtagtagttcc---ctgatgtacga 293
||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct: 1 aatggagtccaagggtggcaaaaagaagtctagcagtagtcgttcctccctgatgtacga 60
Query: 294 agctcccctcggctacagcattga 317
||||||||||||||||||||||||
Sbjct: 61 agctcccctcggctacagcattga 84
>gb| AY536644.1 | Brassica juncea S-adenosylmethionine decarboxylase (SAMDC4) mRNA,
complete cds
Length = 1705
Score = 93.7 bits (47), Expect = 4e-16
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 241 atggagtcaaagggtggcaaaaag---tctagcagtagtagttccctgatgtacgaagct 297
||||||||||| ||||| |||||| |||||||||||||||||| | | |||||||||
Sbjct: 139 atggagtcaaaaggtggtaaaaagaagtctagcagtagtagttccttattttacgaagct 198
Query: 298 cccctcggctacagcattgaagacgttcg 326
|||||||| ||||||||||||||||||||
Sbjct: 199 cccctcggttacagcattgaagacgttcg 227
>gb| AF321141.1 |AF321141S1 Nicotiana tabacum S-adenosylmethionine decarboxylase mRNA, partial
cds
Length = 639
Score = 89.7 bits (45), Expect = 7e-15
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 270 cagtagtagttccctgatgtacgaagctcccctcggctacagcattgaagacgttcgacc 329
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 cagtagtagttccttattttacgaagctcccctcggctacagcattgaagacgttcgacc 81
Query: 330 a 330
|
Sbjct: 82 a 82
>gb| AY232672.1 | Narcissus pseudonarcissus S-adenosylmethionine decarboxylase
(SAMdc) mRNA, complete cds
Length = 1812
Score = 89.7 bits (45), Expect = 7e-15
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 262 aagtctagcagtagtagttccctgatgtacgaagctcccctcggctacagcattgaagac 321
|||||||||||||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct: 182 aagtctagcagtagtaattccatgcaatacgaagctcccctcggctacagcattgaagac 241
Query: 322 gttcg 326
|||||
Sbjct: 242 gttcg 246
>ref| NM_001035545.1 | Arabidopsis thaliana SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE);
adenosylmethionine decarboxylase AT3G02470 (SAMDC)
transcript variant AT3G02470.2 mRNA, complete cds
Length = 2061
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 262 aagtctagcagtagtagttccctgatgtacgaagctcccctcggctacagcattgaagac 321
||||| ||||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct: 422 aagtccagcagtagtagttccttattttacgaagctcccctcggttacagcattgaagac 481
Query: 322 gttcg 326
|||||
Sbjct: 482 gttcg 486
>ref| NM_111114.2 | Arabidopsis thaliana SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE);
adenosylmethionine decarboxylase AT3G02470 (SAMDC)
transcript variant AT3G02470.1 mRNA, complete cds
Length = 1953
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 262 aagtctagcagtagtagttccctgatgtacgaagctcccctcggctacagcattgaagac 321
||||| ||||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct: 329 aagtccagcagtagtagttccttattttacgaagctcccctcggttacagcattgaagac 388
Query: 322 gttcg 326
|||||
Sbjct: 389 gttcg 393
>gb| DQ415920.1 | Cleome spinosa clone BAC Cs3, complete sequence
Length = 141360
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 262 aagtctagcagtagtagttccctgatgtacgaagctcccctcggctacagcattgaagac 321
|||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||
Sbjct: 107086 aagtctagcagtagtaaatccttattctacgaagctcccctcggctacagcattgaagac 107145
Query: 322 gttcg 326
|||||
Sbjct: 107146 gttcg 107150
>gb| AC021640.7 |ATAC021640 Arabidopsis thaliana chromosome III BAC F16B3 genomic sequence,
complete sequence
Length = 103904
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 262 aagtctagcagtagtagttccctgatgtacgaagctcccctcggctacagcattgaagac 321
||||| ||||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct: 25483 aagtccagcagtagtagttccttattttacgaagctcccctcggttacagcattgaagac 25542
Query: 322 gttcg 326
|||||
Sbjct: 25543 gttcg 25547
>emb| Y07765.1 |ATSADMEDC A.thaliana gene encoding S-adenosylmethionine decarboxylase
Length = 2369
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 262 aagtctagcagtagtagttccctgatgtacgaagctcccctcggctacagcattgaagac 321
||||| ||||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct: 720 aagtccagcagtagtagttccttattttacgaagctcccctcggttacagcattgaagac 779
Query: 322 gttcg 326
|||||
Sbjct: 780 gttcg 784
>gb| AF428468.1 |AF428468 Arabidopsis thaliana AT3g02470/F16B3_10 mRNA, complete cds
Length = 1807
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 262 aagtctagcagtagtagttccctgatgtacgaagctcccctcggctacagcattgaagac 321
||||| ||||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct: 256 aagtccagcagtagtagttccttattttacgaagctcccctcggttacagcattgaagac 315
Query: 322 gttcg 326
|||||
Sbjct: 316 gttcg 320
>gb| AY054185.1 | Arabidopsis thaliana AT3g02470/F16B3_10 mRNA, complete cds
Length = 1781
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 262 aagtctagcagtagtagttccctgatgtacgaagctcccctcggctacagcattgaagac 321
||||| ||||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct: 256 aagtccagcagtagtagttccttattttacgaagctcccctcggttacagcattgaagac 315
Query: 322 gttcg 326
|||||
Sbjct: 316 gttcg 320
>gb| AY042824.1 | Arabidopsis thaliana S-adenosylmethionine decarboxylase (F16B3.10)
mRNA, complete cds
Length = 1876
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 262 aagtctagcagtagtagttccctgatgtacgaagctcccctcggctacagcattgaagac 321
||||| ||||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct: 256 aagtccagcagtagtagttccttattttacgaagctcccctcggttacagcattgaagac 315
Query: 322 gttcg 326
|||||
Sbjct: 316 gttcg 320
>gb| U63633.1 |ATU63633 Arabidopsis thaliana S-adenosylmethionine decarboxylase (SAMdc)
mRNA, complete cds
Length = 1823
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 262 aagtctagcagtagtagttccctgatgtacgaagctcccctcggctacagcattgaagac 321
||||| ||||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct: 247 aagtccagcagtagtagttccttattttacgaagctcccctcggttacagcattgaagac 306
Query: 322 gttcg 326
|||||
Sbjct: 307 gttcg 311
>gb| AY730047.1 | Phaseolus vulgaris putative SAMDC uORF mRNA, complete cds
Length = 162
Score = 75.8 bits (38), Expect = 1e-10
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcgacca 330
||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 58 tacgaagctcccctcggctacagcattgaagacattcgacca 99
>gb| S74514.1 | S-adenosylmethionine decarboxylase [Solanum tuberosum=potatoes, cv.
Desiree, Genomic, 2904 nt]
Length = 2904
Score = 71.9 bits (36), Expect = 2e-09
Identities = 90/106 (84%), Gaps = 4/106 (3%)
Strand = Plus / Plus
Query: 229 gtgaatgttctaatggagtcaaagggtggcaaa---aagtctagcagtagtagttccctg 285
||||||| ||||||||||||||| ||||| ||| |||||||| |||||||||||| |
Sbjct: 1101 gtgaatgatctaatggagtcaaaaggtggtaaaaagaagtctagtagtagtagttcctta 1160
Query: 286 atgtacg-aagctcccctcggctacagcattgaagacgttcgacca 330
| |||| |||||||||||||| ||||||| |||||||||||||
Sbjct: 1161 ttttacgtaagctcccctcggcatcagcattagagacgttcgacca 1206
>dbj| AB077442.2 | Malus x domestica SAMDC mRNA for S-adenosylmethionine
decarboxylase, complete cds, clone:MdSAMDC2
Length = 1938
Score = 69.9 bits (35), Expect = 6e-09
Identities = 76/89 (85%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 238 ctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccctgatgtacgaa 294
||||||||||| || |||||||||||| ||||| ||||||| || || | ||||||
Sbjct: 251 ctaatggagtccaaaggtggcaaaaaggattctagtagtagtaaatcattgttctacgaa 310
Query: 295 gctcccctcggctacagcattgaagacgt 323
||||||||||| |||||||||||||||||
Sbjct: 311 gctcccctcggttacagcattgaagacgt 339
>gb| AY491510.2 | Daucus carota S-adenosylmethionine decarboxylase (samdc1) gene,
complete cds
Length = 2849
Score = 67.9 bits (34), Expect = 2e-08
Identities = 86/103 (83%), Gaps = 9/103 (8%)
Strand = Plus / Plus
Query: 230 tgaatgttctaatggagtcaaagggtggcaaaaagtctagcagt------agtagt---t 280
||||||||||||||||| |||| ||||| ||||||||||| ||| |||||| |
Sbjct: 1126 tgaatgttctaatggagacaaaaggtgggaaaaagtctagtagtagtagtagtagtaaat 1185
Query: 281 ccctgatgtacgaagctcccctcggctacagcattgaagacgt 323
|| || | ||||||||||||||||| |||||||||||||||||
Sbjct: 1186 ccttgttctacgaagctcccctcggatacagcattgaagacgt 1228
>gb| DQ415922.1 | Cleome spinosa clone BAC Cs1, complete sequence
Length = 146078
Score = 67.9 bits (34), Expect = 2e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
||||||||||||||||| ||||||||||||||||||||
Sbjct: 111914 tacgaagctcccctcggttacagcattgaagacgttcg 111951
>gb| AY491511.1 | Daucus carota S-adenosylmethionine decarboxylase (samdc2) gene,
complete cds
Length = 2843
Score = 67.9 bits (34), Expect = 2e-08
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 tgaatgttctaatggagtcaaagggtggcaaaaagtctagcagtagtagt 279
||||||||||||||||| |||| ||||| ||||||||||| |||||||||
Sbjct: 1124 tgaatgttctaatggagacaaaaggtgggaaaaagtctagtagtagtagt 1173
Score = 61.9 bits (31), Expect = 2e-06
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgt 323
||||||||||||||||| |||||||||||||||||
Sbjct: 1192 tacgaagctcccctcggatacagcattgaagacgt 1226
>emb| X95729.1 |BJSAMDC1G B.juncea mRNA for S-adenosylmethionine decarboxylase
Length = 1653
Score = 67.9 bits (34), Expect = 2e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tacgaagctcccctcggttacagcattgaagacgttcg 238
>gb| AF488307.1 | Glycine max S-adenosylmethionine decarboxylase (SAMDC) mRNA,
complete cds
Length = 1824
Score = 67.9 bits (34), Expect = 2e-08
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcgacca 330
||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 278 tacgaagctcccctcggatacagcattgaagacgttagacca 319
>gb| AF420239.1 |AF420239 Dendrobium crumenatum S-adenosyl-L-methionine decarboxylase (Samdc)
mRNA, complete cds
Length = 1894
Score = 67.9 bits (34), Expect = 2e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
||||||| ||||||||||||||||||||||||||||||
Sbjct: 272 tacgaagttcccctcggctacagcattgaagacgttcg 309
>gb| AY444341.1 | Brassica juncea S-adenosyl-L-methionine decarboxylase (SAMDC2) gene,
complete cds
Length = 4456
Score = 67.9 bits (34), Expect = 2e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
||||||||||||||||| ||||||||||||||||||||
Sbjct: 2891 tacgaagctcccctcggttacagcattgaagacgttcg 2928
>gb| AF334029.1 |AF334029 Daucus carota S-adenosyl-methionine decarboxylase (SAMDC) mRNA,
complete cds
Length = 1761
Score = 67.9 bits (34), Expect = 2e-08
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 tgaatgttctaatggagtcaaagggtggcaaaaagtctagcagtagtagt 279
||||||||||||||||| |||| ||||| ||||||||||| |||||||||
Sbjct: 139 tgaatgttctaatggagacaaaaggtgggaaaaagtctagtagtagtagt 188
Score = 61.9 bits (31), Expect = 2e-06
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgt 323
||||||||||||||||| |||||||||||||||||
Sbjct: 207 tacgaagctcccctcggatacagcattgaagacgt 241
>gb| AF215665.1 |AF215665 Brassica juncea S-adenosyl-L-methionine decarboxylase (SAMDC3)
mRNA, complete cds
Length = 1743
Score = 67.9 bits (34), Expect = 2e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
||||||||||||||||| ||||||||||||||||||||
Sbjct: 233 tacgaagctcccctcggttacagcattgaagacgttcg 270
>gb| U80916.1 |BJU80916 Brassica juncea S-adenosyl-L-methionine decarboxylase mRNA,
complete cds
Length = 1676
Score = 67.9 bits (34), Expect = 2e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
||||||||||||||||| ||||||||||||||||||||
Sbjct: 194 tacgaagctcccctcggttacagcattgaagacgttcg 231
>dbj| AB062360.1 | Phaseolus lunatus SAMDC mRNA for S-adenosylmethionine
decarboxylase, complete cds
Length = 1518
Score = 67.9 bits (34), Expect = 2e-08
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcgacca 330
|||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 2 tacgaagctcccctcggctatagcattgaagacattcgacca 43
>gb| U12573.1 |CRU12573 Catharanthus roseus S-adenosyl-L-methionine decarboxylase proenzyme
mRNA, complete cds
Length = 1864
Score = 65.9 bits (33), Expect = 1e-07
Identities = 83/99 (83%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 228 agtgaatgttctaatggagtcaaagggtggcaaaaag---tctagcagtagtagttccct 284
|||||||| |||||||||||| || ||||| || ||| ||||| ||||||| ||| |
Sbjct: 147 agtgaatgatctaatggagtctaaaggtgggaagaagaagtctagtagtagtaaatcctt 206
Query: 285 gatgtacgaagctcccctcggctacagcattgaagacgt 323
| ||||||||||||||||| |||||||||||||||||
Sbjct: 207 attctacgaagctcccctcggatacagcattgaagacgt 245
>emb| AJ704800.1 | Prunus persica partial samdc gene for S-adenosylmethionine
decarboxylase, exons 1-3
Length = 1189
Score = 61.9 bits (31), Expect = 2e-06
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgt 323
||||||||||||||||| |||||||||||||||||
Sbjct: 52 tacgaagctcccctcggttacagcattgaagacgt 86
>gb| AF033100.1 |AF033100 Nicotiana tabacum S-adenosylmethionine decarboxylase gene, complete
cds
Length = 2325
Score = 60.0 bits (30), Expect = 6e-06
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
|||||||| |||||||||||||| ||||||||||||||
Sbjct: 337 tacgaagcacccctcggctacagtattgaagacgttcg 374
>gb| AY104070.1 | Zea mays PCO115703 mRNA sequence
Length = 2000
Score = 54.0 bits (27), Expect = 4e-04
Identities = 86/105 (81%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 237 tctaatggagtcaaagggtggcaaaaagtctagcagtagta---gttccctgatgtacga 293
|||||||||||| || |||||||| |||||||| ||||||| || | ||||||||
Sbjct: 178 tctaatggagtcgaaaggtggcaagaagtctagtagtagtaatagtaatttcatgtacga 237
Query: 294 agctcccctcggctacagcattgaagacgttcgaccagctggagg 338
||||||||| ||||||| || || |||||||| ||||| |||||
Sbjct: 238 agctccccttggctacaagatcgaggacgttcgcccagccggagg 282
>ref| NM_001036811.1 | Arabidopsis thaliana adenosylmethionine decarboxylase AT5G15950
transcript variant AT5G15950.2 mRNA, complete cds
Length = 1881
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
|||||||| ||||| || ||||||||||||||||||||
Sbjct: 328 tacgaagcaccccttggttacagcattgaagacgttcg 365
>ref| NM_121600.2 | Arabidopsis thaliana adenosylmethionine decarboxylase AT5G15950
transcript variant AT5G15950.1 mRNA, complete cds
Length = 1748
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
|||||||| ||||| || ||||||||||||||||||||
Sbjct: 244 tacgaagcaccccttggttacagcattgaagacgttcg 281
>gb| BT013281.1 | Lycopersicon esculentum clone 134862F, mRNA sequence
Length = 1812
Score = 52.0 bits (26), Expect = 0.001
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcgacca 330
|||||||||||||| || |||| ||||||||||||||||||
Sbjct: 258 tacgaagctcccctaggttacactattgaagacgttcgacca 299
>emb| AL391145.1 |ATF1N13 Arabidopsis thaliana DNA chromosome 5, BAC clone F1N13 (ESSA project)
Length = 74687
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
|||||||| ||||| || ||||||||||||||||||||
Sbjct: 25193 tacgaagcaccccttggttacagcattgaagacgttcg 25230
>emb| AJ252212.1 |ATH252212 Arabidopsis thaliana adometDC2 gene for S-adenosylmethionine
decarboxylase, exons 1-3
Length = 2072
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
|||||||| ||||| || ||||||||||||||||||||
Sbjct: 651 tacgaagcaccccttggttacagcattgaagacgttcg 688
>emb| AJ251915.1 |ATH251915 Arabidopsis thaliana mRNA for S-adenosylmethionine decarboxylase
(adoMetDC2 gene)and ORF
Length = 1723
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
|||||||| ||||| || ||||||||||||||||||||
Sbjct: 234 tacgaagcaccccttggttacagcattgaagacgttcg 271
>gb| U60592.1 |PSU60592 Pisum sativum putative ORF; conserved in 5' leaders of plant SAMdC
and S-adenosylmethionine decarboxylase mRNAs, complete
cds
Length = 1829
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
|||||||| |||||||| ||||||||||||||| ||||
Sbjct: 262 tacgaagcccccctcggatacagcattgaagacattcg 299
>gb| AF436825.1 |AF436825 Arabidopsis thaliana AT5g15950/F1N13_90 mRNA, complete cds
Length = 1728
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 289 tacgaagctcccctcggctacagcattgaagacgttcg 326
|||||||| ||||| || ||||||||||||||||||||
Sbjct: 245 tacgaagcaccccttggttacagcattgaagacgttcg 282
>gb| U38527.1 |DCU38527 Dianthus caryophyllus S-adenosylmethionine 2 decarboxylase mRNA,
complete cds
Length = 1829
Score = 52.0 bits (26), Expect = 0.001
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 301 ctcggctacagcattgaagacgttcgacca 330
||||||||||||||||||||| ||||||||
Sbjct: 222 ctcggctacagcattgaagaccttcgacca 251
>emb| AJ567368.2 |VVI567368 Vitis vinifera samdc gene for S-adenosylmethionine decarboxylase
proenzyme, mRNA
Length = 1709
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 292 gaagctcccctcggctacagcattgaagacgttcgacc 329
|||||||| || |||||||||||||||||| |||||||
Sbjct: 144 gaagctcctcttggctacagcattgaagacattcgacc 181
>gb| BT013882.1 | Lycopersicon esculentum clone 132862F, mRNA sequence
Length = 1849
Score = 46.1 bits (23), Expect = 0.091
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 292 gaagctcccctcggctacagcattgaagacgttcgacca 330
||||| ||||| |||||||| |||||||||||| |||||
Sbjct: 213 gaagcaccccttggctacagtattgaagacgttagacca 251
Score = 44.1 bits (22), Expect = 0.36
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 229 gtgaatgttctaatggagtcaaagggtggcaaaaagtctagcagta 274
||||||| |||||||||||| || ||||| || |||||||| ||||
Sbjct: 153 gtgaatgatctaatggagtctaaaggtgggaagaagtctagtagta 198
>dbj| AB077441.2 | Malus x domestica SAMDC mRNA for S-adenosylmethionine
decarboxylase, complete cds, clone:MdSAMDC1
Length = 1875
Score = 46.1 bits (23), Expect = 0.091
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 241 atggagtcaaagggtggcaaaaagtctagcagtagtagt 279
|||||||| || ||||| ||||||||||| |||||||||
Sbjct: 159 atggagtccaaaggtggtaaaaagtctagtagtagtagt 197
>gb| U94786.1 |DCU94786 Dianthus caryophyllus S-adenosylmethionine decarboxylase (gcsdc9)
gene, complete cds
Length = 4311
Score = 46.1 bits (23), Expect = 0.091
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 295 gctcccctcggctacagcattgaagacgttcgacc 329
||||| ||||| ||||||||||| |||||||||||
Sbjct: 2692 gctccactcggttacagcattgaggacgttcgacc 2726
>gb| AY663392.1 | Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
Length = 153766
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 accgcctcgccgccgccaccgc 72
||||||||||||||||||||||
Sbjct: 67986 accgcctcgccgccgccaccgc 68007
>gb| AF326781.1 | Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome
condensation factor (CCF), putative resistance protein
(RGA-2), putative resistance protein (RGA2) and putative
nodulin-like-like protein (NLL) gene, complete cds; and
retrotransposons Josephine, Angela-2, Angela-4, Heidi,
Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5,
Barbara, Isabelle, Erika-2, and Claudia
Length = 211009
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 51 accgcctcgccgccgccaccgc 72
||||||||||||||||||||||
Sbjct: 201743 accgcctcgccgccgccaccgc 201722
>gb| AC087552.3 | Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07,
complete sequence
Length = 151399
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 accgcctcgccgccgccaccgc 72
||||||||||||||||||||||
Sbjct: 61842 accgcctcgccgccgccaccgc 61863
>dbj| AP008211.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 accgcctcgccgccgccaccgc 72
||||||||||||||||||||||
Sbjct: 1968965 accgcctcgccgccgccaccgc 1968986
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 tcgccgccgccaccgcagcc 76
||||||||||||||||||||
Sbjct: 5915506 tcgccgccgccaccgcagcc 5915487
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 4756299 cgcctcgccgccgccaccgc 4756280
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 4645666 cgcctcgccgccgccaccgc 4645685
>dbj| AK102034.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033081B21, full
insert sequence
Length = 1312
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 accgcctcgccgccgccaccgc 72
||||||||||||||||||||||
Sbjct: 678 accgcctcgccgccgccaccgc 699
>dbj| AK099362.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033048I06, full
insert sequence
Length = 1345
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 accgcctcgccgccgccaccgc 72
||||||||||||||||||||||
Sbjct: 709 accgcctcgccgccgccaccgc 730
>emb| CT573229.8 | Zebrafish DNA sequence from clone DKEY-11D7 in linkage group 1,
complete sequence
Length = 146843
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 349 ttttctgctgcatattcaaact 370
||||||||||||||||||||||
Sbjct: 46886 ttttctgctgcatattcaaact 46907
>dbj| AK064360.1 | Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B09, full
insert sequence
Length = 1365
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 accgcctcgccgccgccaccgc 72
||||||||||||||||||||||
Sbjct: 708 accgcctcgccgccgccaccgc 729
>tpe| BN000595.1 | TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx66 gene for
class III peroxidase 66, exons 1-2
Length = 1925
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 accgcctcgccgccgccaccgc 72
||||||||||||||||||||||
Sbjct: 1495 accgcctcgccgccgccaccgc 1516
>dbj| AK016582.1 | Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:4932703K07 product:unclassifiable, full
insert sequence
Length = 1166
Score = 42.1 bits (21), Expect = 1.4
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ccgcctcgccgccgccaccgc 72
|||||||||||||||||||||
Sbjct: 84 ccgcctcgccgccgccaccgc 104
>dbj| AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 42.1 bits (21), Expect = 1.4
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 ccgcctcgccgccgccaccgcagcc 76
|||||||||||||||| ||||||||
Sbjct: 17555795 ccgcctcgccgccgccgccgcagcc 17555819
>emb| AL596265.12 | Mouse DNA sequence from clone RP23-134O19 on chromosome 12, complete
sequence
Length = 205332
Score = 42.1 bits (21), Expect = 1.4
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 52 ccgcctcgccgccgccaccgc 72
|||||||||||||||||||||
Sbjct: 108600 ccgcctcgccgccgccaccgc 108580
>gb| DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 42.1 bits (21), Expect = 1.4
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 ccgcctcgccgccgccaccgcagcc 76
|||||||||||||||| ||||||||
Sbjct: 17510166 ccgcctcgccgccgccgccgcagcc 17510190
>emb| AL935066.2 |CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 162200
Score = 42.1 bits (21), Expect = 1.4
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 ccgcctcgccgccgccaccgcagcc 76
|||||||||||||||| ||||||||
Sbjct: 48131 ccgcctcgccgccgccgccgcagcc 48155
>ref| XM_476068.1 | Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1245
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 1212 cgcctcgccgccgccaccgc 1231
>ref| NM_113454.2 | Arabidopsis thaliana adenosylmethionine decarboxylase AT3G25570
mRNA, complete cds
Length = 1527
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 307 tacagcattgaagacgttcgacca 330
|||||||||||||||||| |||||
Sbjct: 79 tacagcattgaagacgttagacca 102
>gb| AY360393.2 | Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16,
complete sequence
Length = 164501
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 111 ctcgtcgggagggctcgaga 130
||||||||||||||||||||
Sbjct: 42838 ctcgtcgggagggctcgaga 42857
>gb| AY360394.1 | Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19,
complete sequence
Length = 158749
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 111 ctcgtcgggagggctcgaga 130
||||||||||||||||||||
Sbjct: 20409 ctcgtcgggagggctcgaga 20390
>gb| AY022835.1 | Oryza sativa microsatellite MRG5160 containing (CGC)X10, genomic
sequence
Length = 230
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 cctcgccgccgccaccgcag 74
||||||||||||||||||||
Sbjct: 148 cctcgccgccgccaccgcag 167
>gb| AC132493.2 | Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636E04,
complete sequence
Length = 141171
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 tcgccgccgccaccgcagcc 76
||||||||||||||||||||
Sbjct: 53080 tcgccgccgccaccgcagcc 53061
>gb| AC151480.1 | Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15,
complete sequence
Length = 130161
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgcagcc 76
||||||||||||||| ||||||||
Sbjct: 117156 cgcctcgccgccgccgccgcagcc 117133
>gb| AC144738.2 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02,
complete sequence
Length = 156649
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 156133 cgcctcgccgccgccaccgc 156152
>gb| AC133003.3 | Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
sequence
Length = 190055
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 22669 cgcctcgccgccgccaccgc 22650
>gb| AC123526.2 | Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06,
complete sequence
Length = 185449
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgcagcc 76
||||||||||||||| ||||||||
Sbjct: 50137 cgcctcgccgccgccgccgcagcc 50114
>gb| DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 21329758 cgcctcgccgccgccaccgc 21329739
>gb| AY339884.1 | Zea mays WD40 repeat protein (mp1) gene, complete cds
Length = 2965
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 1537 cgcctcgccgccgccaccgc 1518
>ref| NM_031220.1 | Homo sapiens PITPNM family member 3 (PITPNM3), mRNA
Length = 3109
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgcagcc 76
|||||||| |||||||||||||||
Sbjct: 32 cgcctcgctgccgccaccgcagcc 9
>emb| Z82204.1 |HS362G17 Human DNA sequence from clone RP3-362G17 on chromosome X Contains part
of the FGF13 gene for fibroblast growth factor 13,
complete sequence
Length = 75145
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 341 caaagaagttttctgctgca 360
||||||||||||||||||||
Sbjct: 32059 caaagaagttttctgctgca 32078
>gb| AC130610.3 | Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
complete sequence
Length = 145070
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 124304 cgcctcgccgccgccaccgc 124285
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 15009 cgcctcgccgccgccaccgc 15028
>gb| AC149634.8 | Medicago truncatula clone mth2-5i17, complete sequence
Length = 116601
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 259 aaaaagtctagcagtagtag 278
||||||||||||||||||||
Sbjct: 22368 aaaaagtctagcagtagtag 22349
>gb| AC077693.19 | Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete
sequence
Length = 187707
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 55 cctcgccgccgccaccgcag 74
||||||||||||||||||||
Sbjct: 52613 cctcgccgccgccaccgcag 52594
>dbj| AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgcagcc 76
||||||||||||||| ||||||||
Sbjct: 1978582 cgcctcgccgccgccgccgcagcc 1978559
>dbj| AP008216.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 55 cctcgccgccgccaccgcag 74
||||||||||||||||||||
Sbjct: 22048069 cctcgccgccgccaccgcag 22048050
>dbj| AP008214.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 111 ctcgtcgggagggctcgaga 130
||||||||||||||||||||
Sbjct: 12373426 ctcgtcgggagggctcgaga 12373445
>dbj| AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 21322787 cgcctcgccgccgccaccgc 21322768
>emb| BX823121.1 |CNS0A7A6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB91ZD09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1700
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 307 tacagcattgaagacgttcgacca 330
|||||||||||||||||| |||||
Sbjct: 282 tacagcattgaagacgttagacca 305
>gb| AF334586.1 |AF334586 Homo sapiens NIR1 mRNA, complete cds
Length = 3109
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgcagcc 76
|||||||| |||||||||||||||
Sbjct: 32 cgcctcgctgccgccaccgcagcc 9
>dbj| AP005782.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBb0079G12
Length = 139796
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 134701 cgcctcgccgccgccaccgc 134682
>dbj| AP005583.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0406E03
Length = 201069
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 125826 cgcctcgccgccgccaccgc 125845
>dbj| AP005802.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBa0057D11
Length = 190790
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 43287 cgcctcgccgccgccaccgc 43268
>dbj| AP004458.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0045D08
Length = 160541
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 111 ctcgtcgggagggctcgaga 130
||||||||||||||||||||
Sbjct: 132075 ctcgtcgggagggctcgaga 132094
>dbj| AB025639.1 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MWL2
Length = 84896
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 307 tacagcattgaagacgttcgacca 330
|||||||||||||||||| |||||
Sbjct: 75562 tacagcattgaagacgttagacca 75539
>dbj| AK121556.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033033I04,
full insert sequence
Length = 1815
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 28 cgcctcgccgccgccaccgc 47
>dbj| AK106389.1 | Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E10, full
insert sequence
Length = 2058
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tcgccgccgccaccgcagcc 76
||||||||||||||||||||
Sbjct: 1369 tcgccgccgccaccgcagcc 1388
>dbj| AK105900.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F08, full
insert sequence
Length = 1399
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 194 cgcctcgccgccgccaccgc 213
>dbj| AK067998.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013127N17, full
insert sequence
Length = 2575
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 cctcgccgccgccaccgcag 74
||||||||||||||||||||
Sbjct: 105 cctcgccgccgccaccgcag 124
>dbj| AK065299.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013002N17, full
insert sequence
Length = 2760
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 82 cgcctcgccgccgccaccgc 101
>gb| AE016959.3 | Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 55 cctcgccgccgccaccgcag 74
||||||||||||||||||||
Sbjct: 22059732 cctcgccgccgccaccgcag 22059713
>gb| DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgcagcc 76
||||||||||||||| ||||||||
Sbjct: 1986363 cgcctcgccgccgccgccgcagcc 1986340
>dbj| AP006372.1 | Lotus japonicus genomic DNA, chromosome 1, clone:LjT36C05, TM0215b,
complete sequence
Length = 84914
Score = 40.1 bits (20), Expect = 5.6
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 287 tgtacgaagctcccctcggctacagcattgaagacgttcgacca 330
|||| |||||||| |||| |||| ||||||||||||||||||
Sbjct: 49422 tgtatgaagctcctctcgattacataattgaagacgttcgacca 49379
>gb| AC135425.3 | Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
complete sequence
Length = 187956
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53 cgcctcgccgccgccaccgc 72
||||||||||||||||||||
Sbjct: 28707 cgcctcgccgccgccaccgc 28688
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,564,915
Number of Sequences: 3902068
Number of extensions: 2564915
Number of successful extensions: 65096
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63545
Number of HSP's gapped (non-prelim): 1487
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)