Clone Name
basd3c06
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple...
208
2e-50
2 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
48
0.036
3 dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic D...
48
0.036
4 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
44
0.56
5 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.56
6 gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome...
44
0.56
7 ref|XM_631062.1| Dictyostelium discoideum hypothetical protein (...
42
2.2
8 gb|DQ228142.1| Mus musculus skeletal muscle cells re-entry induc...
42
2.2
9 gb|DQ228141.1| Homo sapiens skeletal muscle cells re-entry induc...
42
2.2
10 ref|XM_519942.1| PREDICTED: Pan troglodytes similar to mKIAA0493...
42
2.2
11 gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosom...
42
2.2
12 ref|XM_359922.1| Magnaporthe grisea 70-15 hypothetical protein (...
42
2.2
13 ref|XM_418447.1| PREDICTED: Gallus gallus similar to cochlear ot...
42
2.2
14 ref|XM_539156.2| PREDICTED: Canis familiaris similar to F33H2.2 ...
42
2.2
15 emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in...
42
2.2
16 gb|BC033609.1| Mus musculus DNA segment, Chr 15, ERATO Doi 621, ...
42
2.2
17 emb|CR391912.8| Zebrafish DNA sequence from clone CH211-254P10 i...
42
2.2
18 emb|BX005078.32| Zebrafish DNA sequence from clone CH211-182N24 ...
42
2.2
19 emb|CR354547.10| Zebrafish DNA sequence from clone CH211-126G16 ...
42
2.2
20 emb|BX957348.32| Zebrafish DNA sequence from clone CH211-270P4 i...
42
2.2
21 dbj|AK137324.1| Mus musculus 16 days neonate cerebellum cDNA, RI...
42
2.2
22 emb|CR388361.6| Zebrafish DNA sequence from clone DKEY-87J1 in l...
42
2.2
23 emb|CR522997.1| Gallus gallus finished cDNA, clone ChEST794n3
42
2.2
24 gb|BC070426.1| Mus musculus DNA segment, Chr 15, ERATO Doi 621, ...
42
2.2
25 ref|NM_145959.1| Mus musculus DNA segment, Chr 15, ERATO Doi 621...
42
2.2
26 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
42
2.2
27 dbj|AK074370.1| Homo sapiens cDNA FLJ23790 fis, clone HEP21466
42
2.2
28 emb|BX640455.19| Zebrafish DNA sequence from clone DKEY-18D13 in...
42
2.2
29 emb|BX571961.11| Zebrafish DNA sequence from clone DKEY-205O12 i...
42
2.2
30 emb|BX321898.29| Zebrafish DNA sequence from clone DKEYP-34C12 i...
42
2.2
31 dbj|AK122297.1| Mus musculus mRNA for mKIAA0493 protein
42
2.2
32 ref|NM_144963.2| Homo sapiens family with sequence similarity 91...
42
2.2
33 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
42
2.2
34 gb|AC165357.4| Mus musculus BAC clone RP23-114G24 from chromosom...
40
8.8
35 gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
40
8.8
36 gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole b...
40
8.8
37 gb|AC125486.4| Mus musculus BAC clone RP23-21G7 from chromosome ...
40
8.8
38 emb|AL590783.5| Human DNA sequence from clone RP11-397C12 on chr...
40
8.8
39 emb|AL356957.27| Human DNA sequence from clone RP11-403I13 on ch...
40
8.8
40 gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ...
40
8.8
41 emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ...
40
8.8
42 emb|AL645783.13| Mouse DNA sequence from clone RP23-459H16 on ch...
40
8.8
43 emb|AL589871.13| Mouse DNA sequence from clone RP23-391I11 on ch...
40
8.8
44 gb|AF181477.1|AF181473S5 Mus musculus synaptonemal complex prote...
40
8.8
45 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.8
46 dbj|AP007258.2| Oryza sativa (japonica cultivar-group) genomic D...
40
8.8
47 dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic D...
40
8.8
48 dbj|AP006626.3| Oryza sativa (japonica cultivar-group) genomic D...
40
8.8
49 gb|AC074315.79| Mus musculus strain C57BL/6J clone rp23-445c23 m...
40
8.8
50 emb|AL358813.13| Human DNA sequence from clone RP11-353N4 on chr...
40
8.8
51 gb|AY105265.1| Zea mays PCO062717 mRNA sequence
40
8.8
52 emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC...
40
8.8
53 gb|M76986.1|NEUMTINS Neurospora intermedia mitochondrial DNA wit...
40
8.8
54 dbj|AB007962.1| Homo sapiens mRNA, chromosome 1 specific transcr...
40
8.8
>gb| AF474373.1 | Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
Length = 124050
Score = 208 bits (105), Expect = 2e-50
Identities = 214/249 (85%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 295 ggcatcaccacaggacatttgcaagctctgcatgcacatcaacaaagatcaacgtattgc 354
|||||||||||||| ||||||||||| | || |||||| || ||||||||||| |||
Sbjct: 114813 ggcatcaccacaggctatttgcaagctatacaagcacataaatgaagatcaacgtgctgc 114872
Query: 355 tatcagagacatgggaactggaccgttcctcgacatcaagtgtggatacttgcacaacac 414
||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||||||||
Sbjct: 114873 tatcagagacatgggtactggagcgttccttgacatcaagtgtggttacttgcacaacac 114932
Query: 415 cgtcgtgacatggttcacaaggttgtaccactcaggaaggagaggttttttcggacctgg 474
| | |||||||||||||| ||| |||||||||||| |||| ||||||| | | ||| |
Sbjct: 114933 ccttgtgacatggttcactaggcagtaccactcagggaggaaaggttttgttgtgcctag 114992
Query: 475 acg-cggttcatcccgttgaccaaggaatctgttcattagattttgggcatccctcgtgg 533
||| |||||||||| | ||| |||||||||||||| ||||||||||||| ||||||||
Sbjct: 114993 acgtgggttcatcccactaaccgaggaatctgttcataagattttgggcattcctcgtgg 115052
Query: 534 agacatcga 542
||| |||||
Sbjct: 115053 agatatcga 115061
Score = 79.8 bits (40), Expect = 1e-11
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 206 cacattgtttcgtatcagttgccacttttttccattagtacttgccaaaacaatagttca 265
|||||||||| ||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 114692 cacattgttttgtagcagttgccacttttttcctatagtatttgccaaaacaatagttca 114751
>dbj| AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 48.1 bits (24), Expect = 0.036
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 568 tacataccctcatggatacgttgcggaa 595
|||||||||||||||| |||||||||||
Sbjct: 28932909 tacataccctcatggagacgttgcggaa 28932882
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 25 cggcgaggaagggcggaggagacg 48
||||||||||||| ||||||||||
Sbjct: 12126709 cggcgaggaagggaggaggagacg 12126686
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 25 cggcgaggaagggcggaggagacg 48
||||||||||||| ||||||||||
Sbjct: 12126638 cggcgaggaagggaggaggagacg 12126615
>dbj| AP005167.4 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0060O17
Length = 180015
Score = 48.1 bits (24), Expect = 0.036
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 568 tacataccctcatggatacgttgcggaa 595
|||||||||||||||| |||||||||||
Sbjct: 50446 tacataccctcatggagacgttgcggaa 50419
>gb| DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 44.1 bits (22), Expect = 0.56
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 572 taccctcatggatacgttgcggaacttgatgggcctgtaggtgttg 617
|||||||||||| |||||||||||| ||||| | ||||||||||
Sbjct: 11948756 taccctcatggaggtgttgcggaacttcatggggcggtaggtgttg 11948801
>dbj| AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 44.1 bits (22), Expect = 0.56
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 572 taccctcatggatacgttgcggaacttgatgggcctgtaggtgttg 617
|||||||||||| |||||||||||| ||||| | ||||||||||
Sbjct: 11945519 taccctcatggaggtgttgcggaacttcatggggcggtaggtgttg 11945564
>gb| AC126222.2 | Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0014I10, complete sequence
Length = 113946
Score = 44.1 bits (22), Expect = 0.56
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 572 taccctcatggatacgttgcggaacttgatgggcctgtaggtgttg 617
|||||||||||| |||||||||||| ||||| | ||||||||||
Sbjct: 50018 taccctcatggaggtgttgcggaacttcatggggcggtaggtgttg 50063
>ref| XM_631062.1 | Dictyostelium discoideum hypothetical protein (DDB0188473), partial
mRNA
Length = 741
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 492 gaccaaggaatctgttcatta 512
|||||||||||||||||||||
Sbjct: 175 gaccaaggaatctgttcatta 195
>gb| DQ228142.1 | Mus musculus skeletal muscle cells re-entry induced mRNA, complete
cds
Length = 2630
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgca 326
|||||||||||||||||||||
Sbjct: 841 aggacatttgcaagctctgca 821
>gb| DQ228141.1 | Homo sapiens skeletal muscle cells re-entry induced mRNA, complete
cds
Length = 2667
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgca 326
|||||||||||||||||||||
Sbjct: 885 aggacatttgcaagctctgca 865
>ref| XM_519942.1 | PREDICTED: Pan troglodytes similar to mKIAA0493 protein (LOC464374),
mRNA
Length = 3627
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgca 326
|||||||||||||||||||||
Sbjct: 1445 aggacatttgcaagctctgca 1425
>gb| AC078894.11 | Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBa0096G08 map E1363S, complete sequence
Length = 140681
Score = 42.1 bits (21), Expect = 2.2
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 25 cggcgaggaagggcggaggagacga 49
|||||||| ||||||||||||||||
Sbjct: 81108 cggcgaggtagggcggaggagacga 81084
>ref| XM_359922.1 | Magnaporthe grisea 70-15 hypothetical protein (MG04855.4) partial
mRNA
Length = 5007
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 55 ttccaggtcccgctccagcgc 75
|||||||||||||||||||||
Sbjct: 2451 ttccaggtcccgctccagcgc 2431
>ref| XM_418447.1 | PREDICTED: Gallus gallus similar to cochlear otoferlin (LOC420340),
mRNA
Length = 7269
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 305 caggacatttgcaagctctgc 325
|||||||||||||||||||||
Sbjct: 99 caggacatttgcaagctctgc 79
>ref| XM_539156.2 | PREDICTED: Canis familiaris similar to F33H2.2 (LOC482035), mRNA
Length = 5012
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgca 326
|||||||||||||||||||||
Sbjct: 1799 aggacatttgcaagctctgca 1779
>emb| CR847808.6 | Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22,
complete sequence
Length = 147994
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 10494 aaaaaaatagtacacttcaggttgatgga 10466
>gb| BC033609.1 | Mus musculus DNA segment, Chr 15, ERATO Doi 621, expressed, mRNA
(cDNA clone MGC:40987 IMAGE:5401763), complete cds
Length = 4689
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgca 326
|||||||||||||||||||||
Sbjct: 144 aggacatttgcaagctctgca 124
>emb| CR391912.8 | Zebrafish DNA sequence from clone CH211-254P10 in linkage group 16,
complete sequence
Length = 151269
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
||||||||||| || ||||||||||||||
Sbjct: 101106 aaaacaatagtacatttcaggttgatgga 101134
>emb| BX005078.32 | Zebrafish DNA sequence from clone CH211-182N24 in linkage group 22,
complete sequence
Length = 135288
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 127178 aaaaaaatagtacacttcaggttgatgga 127150
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 112170 aaaaaaatagtacacttcaggttgatgga 112142
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 97712 aaaaaaatagtacacttcaggttgatgga 97684
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 72753 aaaaaaatagtacacttcaggttgatgga 72725
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 58663 aaaaaaatagtacacttcaggttgatgga 58635
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 31556 aaaaaaatagtacacttcaggttgatgga 31528
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 16470 aaaaaaatagtacacttcaggttgatgga 16442
>emb| CR354547.10 | Zebrafish DNA sequence from clone CH211-126G16 in linkage group 8,
complete sequence
Length = 99726
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 64560 aaaaaaatagtacacttcaggttgatgga 64532
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 257 aatagttcacttcaggttgatgga 280
|||||| |||||||||||||||||
Sbjct: 32695 aatagtacacttcaggttgatgga 32672
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 257 aatagttcacttcaggttgatgga 280
|||||| |||||||||||||||||
Sbjct: 7092 aatagtacacttcaggttgatgga 7069
>emb| BX957348.32 | Zebrafish DNA sequence from clone CH211-270P4 in linkage group 22,
complete sequence
Length = 148056
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 138931 aaaaaaatagtacacttcaggttgatgga 138903
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 69331 aaaaaaatagtacacttcaggttgatgga 69303
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 55207 aaaaaaatagtacacttcaggttgatgga 55179
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 37766 aaaaaaatagtacacttcaggttgatgga 37738
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 22665 aaaaaaatagtacacttcaggttgatgga 22637
>dbj| AK137324.1 | Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
enriched library, clone:9630010D23 product:Similar to
hypothetical protein F33H2.2-Caenorhabditis elegans
homolog [Homo sapiens], full insert sequence
Length = 4767
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgca 326
|||||||||||||||||||||
Sbjct: 1063 aggacatttgcaagctctgca 1043
>emb| CR388361.6 | Zebrafish DNA sequence from clone DKEY-87J1 in linkage group 22,
complete sequence
Length = 64922
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 7008 aaaaaaatagtacacttcaggttgatgga 6980
>emb| CR522997.1 | Gallus gallus finished cDNA, clone ChEST794n3
Length = 1006
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 305 caggacatttgcaagctctgc 325
|||||||||||||||||||||
Sbjct: 306 caggacatttgcaagctctgc 286
>gb| BC070426.1 | Mus musculus DNA segment, Chr 15, ERATO Doi 621, expressed, mRNA
(cDNA clone IMAGE:6405871)
Length = 5567
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgca 326
|||||||||||||||||||||
Sbjct: 1048 aggacatttgcaagctctgca 1028
>ref| NM_145959.1 | Mus musculus DNA segment, Chr 15, ERATO Doi 621, expressed
(D15Ertd621e), mRNA
Length = 4689
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgca 326
|||||||||||||||||||||
Sbjct: 144 aggacatttgcaagctctgca 124
>dbj| AP008216.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 42.1 bits (21), Expect = 2.2
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 25 cggcgaggaagggcggaggagacga 49
|||||||| ||||||||||||||||
Sbjct: 19820070 cggcgaggtagggcggaggagacga 19820046
>dbj| AK074370.1 | Homo sapiens cDNA FLJ23790 fis, clone HEP21466
Length = 2244
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgca 326
|||||||||||||||||||||
Sbjct: 395 aggacatttgcaagctctgca 375
>emb| BX640455.19 | Zebrafish DNA sequence from clone DKEY-18D13 in linkage group 22,
complete sequence
Length = 75725
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 71134 aaaaaaatagtacacttcaggttgatgga 71106
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 56094 aaaaaaatagtacacttcaggttgatgga 56066
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 30786 aaaaaaatagtacacttcaggttgatgga 30758
>emb| BX571961.11 | Zebrafish DNA sequence from clone DKEY-205O12 in linkage group 22,
complete sequence
Length = 149478
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 146518 aaaaaaatagtacacttcaggttgatgga 146490
>emb| BX321898.29 | Zebrafish DNA sequence from clone DKEYP-34C12 in linkage group 22,
complete sequence
Length = 195042
Score = 42.1 bits (21), Expect = 2.2
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 252 aaaacaatagttcacttcaggttgatgga 280
|||| |||||| |||||||||||||||||
Sbjct: 179785 aaaaaaatagtacacttcaggttgatgga 179813
>dbj| AK122297.1 | Mus musculus mRNA for mKIAA0493 protein
Length = 5407
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgca 326
|||||||||||||||||||||
Sbjct: 912 aggacatttgcaagctctgca 892
>ref| NM_144963.2 | Homo sapiens family with sequence similarity 91, member A1
(FAM91A1), mRNA
Length = 5347
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgca 326
|||||||||||||||||||||
Sbjct: 885 aggacatttgcaagctctgca 865
>gb| AE016959.3 | Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 42.1 bits (21), Expect = 2.2
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 25 cggcgaggaagggcggaggagacga 49
|||||||| ||||||||||||||||
Sbjct: 19831346 cggcgaggtagggcggaggagacga 19831322
>gb| AC165357.4 | Mus musculus BAC clone RP23-114G24 from chromosome 10, complete
sequence
Length = 216816
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 440 taccactcaggaaggagaggtttt 463
|||||||||||||||||| |||||
Sbjct: 61504 taccactcaggaaggagatgtttt 61527
>gb| CP000359.1 | Deinococcus geothermalis DSM 11300, complete genome
Length = 2467205
Score = 40.1 bits (20), Expect = 8.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 70 cagcgccggcgcgcaggcaa 89
||||||||||||||||||||
Sbjct: 1630243 cagcgccggcgcgcaggcaa 1630224
>gb| DQ013294.1 | Polyangium cellulosum strain So ce12 disorazole biosynthesis gene
cluster, complete sequence
Length = 84868
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 603 ggcctgtaggtgttgacgacgacg 626
||||||||||||| ||||||||||
Sbjct: 68842 ggcctgtaggtgtcgacgacgacg 68865
>gb| AC125486.4 | Mus musculus BAC clone RP23-21G7 from chromosome 10, complete
sequence
Length = 222316
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 440 taccactcaggaaggagaggtttt 463
|||||||||||||||||| |||||
Sbjct: 8519 taccactcaggaaggagatgtttt 8542
>emb| AL590783.5 | Human DNA sequence from clone RP11-397C12 on chromosome 1 Contains a
novel gene, complete sequence
Length = 157356
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 178 ttttacatttttggctcccctttt 201
||||||||||||||||| ||||||
Sbjct: 62814 ttttacatttttggctcacctttt 62837
>emb| AL356957.27 | Human DNA sequence from clone RP11-403I13 on chromosome 1 Contains the 5'
end of a novel pseudogene, a profilin 1 (PFN1) pseudogene,
six novel genes and a novel pseudogene, complete sequence
Length = 204702
Score = 40.1 bits (20), Expect = 8.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgc 325
||||||||||||||||||||
Sbjct: 153121 aggacatttgcaagctctgc 153102
>gb| CP000090.1 | Ralstonia eutropha JMP134 chromosome 1, complete sequence
Length = 3806533
Score = 40.1 bits (20), Expect = 8.8
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 57 ccaggtcccgctccagcgccggcgcgca 84
|||||||| || ||||||||||||||||
Sbjct: 449691 ccaggtcctgcgccagcgccggcgcgca 449664
>emb| AL939127.1 |SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
Length = 290850
Score = 40.1 bits (20), Expect = 8.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 63 cccgctccagcgccggcgcg 82
||||||||||||||||||||
Sbjct: 275720 cccgctccagcgccggcgcg 275701
>emb| AL645783.13 | Mouse DNA sequence from clone RP23-459H16 on chromosome 13 Contains the
Foxc1 gene for forkhead box C1, a novel gene, the 3' end
of the Gmds gene forGDP-mannose 4,6-dehydratase and two
CpG islands, complete sequence
Length = 98685
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 313 ttgcaagctctgcatgcacatcaa 336
|||||||||||||||| |||||||
Sbjct: 79514 ttgcaagctctgcatgtacatcaa 79537
>emb| AL589871.13 | Mouse DNA sequence from clone RP23-391I11 on chromosome 13 Contains the
5' end of the gene for a novel serine (or cysteine)
proteinase inhibitor clade B (Serpinb) or serine protease
inhibitor (Spi) family member, the Spi12 and Spi6 genes for
serine protease inhibitors 12 and 6, the the genes for
serine (or cysteine) proteinase inhibitor clade B member 9b
(Serpinb9b) and clade B (ovalbumin) member 1b (Serpinb1b),
a serine protease inhibitor (Spi) pseudogene and a
prohibitin (Phb) pseudogene, complete sequence
Length = 217643
Score = 40.1 bits (20), Expect = 8.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 444 actcaggaaggagaggtttt 463
||||||||||||||||||||
Sbjct: 168370 actcaggaaggagaggtttt 168389
>gb| AF181477.1 |AF181473S5 Mus musculus synaptonemal complex protein 3 (Sycp3) gene, exon 7
Length = 3047
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 440 taccactcaggaaggagaggtttt 463
|||||||||||||||||| |||||
Sbjct: 2819 taccactcaggaaggagatgtttt 2796
>dbj| AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 40.1 bits (20), Expect = 8.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 cggcgaggaagggcggagga 44
||||||||||||||||||||
Sbjct: 22814135 cggcgaggaagggcggagga 22814154
>dbj| AP007258.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1155H11
Length = 51733
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 25 cggcgaggaagggcggaggagacg 48
||||||||||||| ||||||||||
Sbjct: 27114 cggcgaggaagggaggaggagacg 27091
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 25 cggcgaggaagggcggaggagacg 48
||||||||||||| ||||||||||
Sbjct: 27043 cggcgaggaagggaggaggagacg 27020
>dbj| AP003622.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0633E08
Length = 136471
Score = 40.1 bits (20), Expect = 8.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 cggcgaggaagggcggagga 44
||||||||||||||||||||
Sbjct: 101086 cggcgaggaagggcggagga 101105
>dbj| AP006626.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1042B08
Length = 142032
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 25 cggcgaggaagggcggaggagacg 48
||||||||||||| ||||||||||
Sbjct: 135557 cggcgaggaagggaggaggagacg 135534
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 25 cggcgaggaagggcggaggagacg 48
||||||||||||| ||||||||||
Sbjct: 135486 cggcgaggaagggaggaggagacg 135463
>gb| AC074315.79 | Mus musculus strain C57BL/6J clone rp23-445c23 map 15, complete
sequence
Length = 177864
Score = 40.1 bits (20), Expect = 8.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 396 gtggatacttgcacaacacc 415
||||||||||||||||||||
Sbjct: 81866 gtggatacttgcacaacacc 81847
>emb| AL358813.13 | Human DNA sequence from clone RP11-353N4 on chromosome 1 Contains the
3' end of a novel gene, a novel gene, a novel pseudogene,
a NHP2 non-histone chromosome protein 2-like 1 (S.
cerevisiae) (NHP2L1) pseudogene, two novel genes and two
CpG islands, complete sequence
Length = 125166
Score = 40.1 bits (20), Expect = 8.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgc 325
||||||||||||||||||||
Sbjct: 61047 aggacatttgcaagctctgc 61028
>gb| AY105265.1 | Zea mays PCO062717 mRNA sequence
Length = 2229
Score = 40.1 bits (20), Expect = 8.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 617 gacgacgacggcgagggggt 636
||||||||||||||||||||
Sbjct: 596 gacgacgacggcgagggggt 577
>emb| AJ874112.1 | Polyangium cellulosum disA gene, disB gene, disC gene, disD gene, ORF1,
ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10,
ORF11, ORF12, ORF13, ORF14, ORF15, ORF16, ORF17, ORF18 and
ORF19
Length = 86080
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 603 ggcctgtaggtgttgacgacgacg 626
||||||||||||| ||||||||||
Sbjct: 68760 ggcctgtaggtgtcgacgacgacg 68783
>gb| M76986.1 |NEUMTINS Neurospora intermedia mitochondrial DNA with a 1.6 kb insertion
Length = 1813
Score = 40.1 bits (20), Expect = 8.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 198 ttttttaccacattgtttcgtatc 221
|||||||||||||| |||||||||
Sbjct: 1307 ttttttaccacattttttcgtatc 1284
>dbj| AB007962.1 | Homo sapiens mRNA, chromosome 1 specific transcript KIAA0493
Length = 5734
Score = 40.1 bits (20), Expect = 8.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 306 aggacatttgcaagctctgc 325
||||||||||||||||||||
Sbjct: 2345 aggacatttgcaagctctgc 2326
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,798,310
Number of Sequences: 3902068
Number of extensions: 5798310
Number of successful extensions: 135133
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134540
Number of HSP's gapped (non-prelim): 592
length of query: 644
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 621
effective length of database: 17,143,297,704
effective search space: 10645987874184
effective search space used: 10645987874184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)