Clone Name | basd3c06 |
---|---|
Clone Library Name | barley_pub |
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 208 bits (105), Expect = 2e-50 Identities = 214/249 (85%), Gaps = 1/249 (0%) Strand = Plus / Plus Query: 295 ggcatcaccacaggacatttgcaagctctgcatgcacatcaacaaagatcaacgtattgc 354 |||||||||||||| ||||||||||| | || |||||| || ||||||||||| ||| Sbjct: 114813 ggcatcaccacaggctatttgcaagctatacaagcacataaatgaagatcaacgtgctgc 114872 Query: 355 tatcagagacatgggaactggaccgttcctcgacatcaagtgtggatacttgcacaacac 414 ||||||||||||||| |||||| ||||||| |||||||||||||| |||||||||||||| Sbjct: 114873 tatcagagacatgggtactggagcgttccttgacatcaagtgtggttacttgcacaacac 114932 Query: 415 cgtcgtgacatggttcacaaggttgtaccactcaggaaggagaggttttttcggacctgg 474 | | |||||||||||||| ||| |||||||||||| |||| ||||||| | | ||| | Sbjct: 114933 ccttgtgacatggttcactaggcagtaccactcagggaggaaaggttttgttgtgcctag 114992 Query: 475 acg-cggttcatcccgttgaccaaggaatctgttcattagattttgggcatccctcgtgg 533 ||| |||||||||| | ||| |||||||||||||| ||||||||||||| |||||||| Sbjct: 114993 acgtgggttcatcccactaaccgaggaatctgttcataagattttgggcattcctcgtgg 115052 Query: 534 agacatcga 542 ||| ||||| Sbjct: 115053 agatatcga 115061 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Plus Query: 206 cacattgtttcgtatcagttgccacttttttccattagtacttgccaaaacaatagttca 265 |||||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 114692 cacattgttttgtagcagttgccacttttttcctatagtatttgccaaaacaatagttca 114751
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Minus Query: 568 tacataccctcatggatacgttgcggaa 595 |||||||||||||||| ||||||||||| Sbjct: 28932909 tacataccctcatggagacgttgcggaa 28932882 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 cggcgaggaagggcggaggagacg 48 ||||||||||||| |||||||||| Sbjct: 12126709 cggcgaggaagggaggaggagacg 12126686 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 cggcgaggaagggcggaggagacg 48 ||||||||||||| |||||||||| Sbjct: 12126638 cggcgaggaagggaggaggagacg 12126615
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17 Length = 180015 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Minus Query: 568 tacataccctcatggatacgttgcggaa 595 |||||||||||||||| ||||||||||| Sbjct: 50446 tacataccctcatggagacgttgcggaa 50419
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.56 Identities = 40/46 (86%) Strand = Plus / Plus Query: 572 taccctcatggatacgttgcggaacttgatgggcctgtaggtgttg 617 |||||||||||| |||||||||||| ||||| | |||||||||| Sbjct: 11948756 taccctcatggaggtgttgcggaacttcatggggcggtaggtgttg 11948801
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.56 Identities = 40/46 (86%) Strand = Plus / Plus Query: 572 taccctcatggatacgttgcggaacttgatgggcctgtaggtgttg 617 |||||||||||| |||||||||||| ||||| | |||||||||| Sbjct: 11945519 taccctcatggaggtgttgcggaacttcatggggcggtaggtgttg 11945564
>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0014I10, complete sequence Length = 113946 Score = 44.1 bits (22), Expect = 0.56 Identities = 40/46 (86%) Strand = Plus / Plus Query: 572 taccctcatggatacgttgcggaacttgatgggcctgtaggtgttg 617 |||||||||||| |||||||||||| ||||| | |||||||||| Sbjct: 50018 taccctcatggaggtgttgcggaacttcatggggcggtaggtgttg 50063
>ref|XM_631062.1| Dictyostelium discoideum hypothetical protein (DDB0188473), partial mRNA Length = 741 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 gaccaaggaatctgttcatta 512 ||||||||||||||||||||| Sbjct: 175 gaccaaggaatctgttcatta 195
>gb|DQ228142.1| Mus musculus skeletal muscle cells re-entry induced mRNA, complete cds Length = 2630 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgca 326 ||||||||||||||||||||| Sbjct: 841 aggacatttgcaagctctgca 821
>gb|DQ228141.1| Homo sapiens skeletal muscle cells re-entry induced mRNA, complete cds Length = 2667 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgca 326 ||||||||||||||||||||| Sbjct: 885 aggacatttgcaagctctgca 865
>ref|XM_519942.1| PREDICTED: Pan troglodytes similar to mKIAA0493 protein (LOC464374), mRNA Length = 3627 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgca 326 ||||||||||||||||||||| Sbjct: 1445 aggacatttgcaagctctgca 1425
>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence Length = 140681 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 cggcgaggaagggcggaggagacga 49 |||||||| |||||||||||||||| Sbjct: 81108 cggcgaggtagggcggaggagacga 81084
>ref|XM_359922.1| Magnaporthe grisea 70-15 hypothetical protein (MG04855.4) partial mRNA Length = 5007 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 ttccaggtcccgctccagcgc 75 ||||||||||||||||||||| Sbjct: 2451 ttccaggtcccgctccagcgc 2431
>ref|XM_418447.1| PREDICTED: Gallus gallus similar to cochlear otoferlin (LOC420340), mRNA Length = 7269 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 305 caggacatttgcaagctctgc 325 ||||||||||||||||||||| Sbjct: 99 caggacatttgcaagctctgc 79
>ref|XM_539156.2| PREDICTED: Canis familiaris similar to F33H2.2 (LOC482035), mRNA Length = 5012 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgca 326 ||||||||||||||||||||| Sbjct: 1799 aggacatttgcaagctctgca 1779
>emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22, complete sequence Length = 147994 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 10494 aaaaaaatagtacacttcaggttgatgga 10466
>gb|BC033609.1| Mus musculus DNA segment, Chr 15, ERATO Doi 621, expressed, mRNA (cDNA clone MGC:40987 IMAGE:5401763), complete cds Length = 4689 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgca 326 ||||||||||||||||||||| Sbjct: 144 aggacatttgcaagctctgca 124
>emb|CR391912.8| Zebrafish DNA sequence from clone CH211-254P10 in linkage group 16, complete sequence Length = 151269 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 252 aaaacaatagttcacttcaggttgatgga 280 ||||||||||| || |||||||||||||| Sbjct: 101106 aaaacaatagtacatttcaggttgatgga 101134
>emb|BX005078.32| Zebrafish DNA sequence from clone CH211-182N24 in linkage group 22, complete sequence Length = 135288 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 127178 aaaaaaatagtacacttcaggttgatgga 127150 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 112170 aaaaaaatagtacacttcaggttgatgga 112142 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 97712 aaaaaaatagtacacttcaggttgatgga 97684 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 72753 aaaaaaatagtacacttcaggttgatgga 72725 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 58663 aaaaaaatagtacacttcaggttgatgga 58635 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 31556 aaaaaaatagtacacttcaggttgatgga 31528 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 16470 aaaaaaatagtacacttcaggttgatgga 16442
>emb|CR354547.10| Zebrafish DNA sequence from clone CH211-126G16 in linkage group 8, complete sequence Length = 99726 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 64560 aaaaaaatagtacacttcaggttgatgga 64532 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 aatagttcacttcaggttgatgga 280 |||||| ||||||||||||||||| Sbjct: 32695 aatagtacacttcaggttgatgga 32672 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 aatagttcacttcaggttgatgga 280 |||||| ||||||||||||||||| Sbjct: 7092 aatagtacacttcaggttgatgga 7069
>emb|BX957348.32| Zebrafish DNA sequence from clone CH211-270P4 in linkage group 22, complete sequence Length = 148056 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 138931 aaaaaaatagtacacttcaggttgatgga 138903 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 69331 aaaaaaatagtacacttcaggttgatgga 69303 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 55207 aaaaaaatagtacacttcaggttgatgga 55179 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 37766 aaaaaaatagtacacttcaggttgatgga 37738 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 22665 aaaaaaatagtacacttcaggttgatgga 22637
>dbj|AK137324.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630010D23 product:Similar to hypothetical protein F33H2.2-Caenorhabditis elegans homolog [Homo sapiens], full insert sequence Length = 4767 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgca 326 ||||||||||||||||||||| Sbjct: 1063 aggacatttgcaagctctgca 1043
>emb|CR388361.6| Zebrafish DNA sequence from clone DKEY-87J1 in linkage group 22, complete sequence Length = 64922 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 7008 aaaaaaatagtacacttcaggttgatgga 6980
>emb|CR522997.1| Gallus gallus finished cDNA, clone ChEST794n3 Length = 1006 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 305 caggacatttgcaagctctgc 325 ||||||||||||||||||||| Sbjct: 306 caggacatttgcaagctctgc 286
>gb|BC070426.1| Mus musculus DNA segment, Chr 15, ERATO Doi 621, expressed, mRNA (cDNA clone IMAGE:6405871) Length = 5567 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgca 326 ||||||||||||||||||||| Sbjct: 1048 aggacatttgcaagctctgca 1028
>ref|NM_145959.1| Mus musculus DNA segment, Chr 15, ERATO Doi 621, expressed (D15Ertd621e), mRNA Length = 4689 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgca 326 ||||||||||||||||||||| Sbjct: 144 aggacatttgcaagctctgca 124
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 cggcgaggaagggcggaggagacga 49 |||||||| |||||||||||||||| Sbjct: 19820070 cggcgaggtagggcggaggagacga 19820046
>dbj|AK074370.1| Homo sapiens cDNA FLJ23790 fis, clone HEP21466 Length = 2244 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgca 326 ||||||||||||||||||||| Sbjct: 395 aggacatttgcaagctctgca 375
>emb|BX640455.19| Zebrafish DNA sequence from clone DKEY-18D13 in linkage group 22, complete sequence Length = 75725 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 71134 aaaaaaatagtacacttcaggttgatgga 71106 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 56094 aaaaaaatagtacacttcaggttgatgga 56066 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 30786 aaaaaaatagtacacttcaggttgatgga 30758
>emb|BX571961.11| Zebrafish DNA sequence from clone DKEY-205O12 in linkage group 22, complete sequence Length = 149478 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 146518 aaaaaaatagtacacttcaggttgatgga 146490
>emb|BX321898.29| Zebrafish DNA sequence from clone DKEYP-34C12 in linkage group 22, complete sequence Length = 195042 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 252 aaaacaatagttcacttcaggttgatgga 280 |||| |||||| ||||||||||||||||| Sbjct: 179785 aaaaaaatagtacacttcaggttgatgga 179813
>dbj|AK122297.1| Mus musculus mRNA for mKIAA0493 protein Length = 5407 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgca 326 ||||||||||||||||||||| Sbjct: 912 aggacatttgcaagctctgca 892
>ref|NM_144963.2| Homo sapiens family with sequence similarity 91, member A1 (FAM91A1), mRNA Length = 5347 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgca 326 ||||||||||||||||||||| Sbjct: 885 aggacatttgcaagctctgca 865
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 cggcgaggaagggcggaggagacga 49 |||||||| |||||||||||||||| Sbjct: 19831346 cggcgaggtagggcggaggagacga 19831322
>gb|AC165357.4| Mus musculus BAC clone RP23-114G24 from chromosome 10, complete sequence Length = 216816 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 taccactcaggaaggagaggtttt 463 |||||||||||||||||| ||||| Sbjct: 61504 taccactcaggaaggagatgtttt 61527
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 cagcgccggcgcgcaggcaa 89 |||||||||||||||||||| Sbjct: 1630243 cagcgccggcgcgcaggcaa 1630224
>gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole biosynthesis gene cluster, complete sequence Length = 84868 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 603 ggcctgtaggtgttgacgacgacg 626 ||||||||||||| |||||||||| Sbjct: 68842 ggcctgtaggtgtcgacgacgacg 68865
>gb|AC125486.4| Mus musculus BAC clone RP23-21G7 from chromosome 10, complete sequence Length = 222316 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 taccactcaggaaggagaggtttt 463 |||||||||||||||||| ||||| Sbjct: 8519 taccactcaggaaggagatgtttt 8542
>emb|AL590783.5| Human DNA sequence from clone RP11-397C12 on chromosome 1 Contains a novel gene, complete sequence Length = 157356 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 ttttacatttttggctcccctttt 201 ||||||||||||||||| |||||| Sbjct: 62814 ttttacatttttggctcacctttt 62837
>emb|AL356957.27| Human DNA sequence from clone RP11-403I13 on chromosome 1 Contains the 5' end of a novel pseudogene, a profilin 1 (PFN1) pseudogene, six novel genes and a novel pseudogene, complete sequence Length = 204702 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgc 325 |||||||||||||||||||| Sbjct: 153121 aggacatttgcaagctctgc 153102
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 57 ccaggtcccgctccagcgccggcgcgca 84 |||||||| || |||||||||||||||| Sbjct: 449691 ccaggtcctgcgccagcgccggcgcgca 449664
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cccgctccagcgccggcgcg 82 |||||||||||||||||||| Sbjct: 275720 cccgctccagcgccggcgcg 275701
>emb|AL645783.13| Mouse DNA sequence from clone RP23-459H16 on chromosome 13 Contains the Foxc1 gene for forkhead box C1, a novel gene, the 3' end of the Gmds gene forGDP-mannose 4,6-dehydratase and two CpG islands, complete sequence Length = 98685 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 ttgcaagctctgcatgcacatcaa 336 |||||||||||||||| ||||||| Sbjct: 79514 ttgcaagctctgcatgtacatcaa 79537
>emb|AL589871.13| Mouse DNA sequence from clone RP23-391I11 on chromosome 13 Contains the 5' end of the gene for a novel serine (or cysteine) proteinase inhibitor clade B (Serpinb) or serine protease inhibitor (Spi) family member, the Spi12 and Spi6 genes for serine protease inhibitors 12 and 6, the the genes for serine (or cysteine) proteinase inhibitor clade B member 9b (Serpinb9b) and clade B (ovalbumin) member 1b (Serpinb1b), a serine protease inhibitor (Spi) pseudogene and a prohibitin (Phb) pseudogene, complete sequence Length = 217643 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 actcaggaaggagaggtttt 463 |||||||||||||||||||| Sbjct: 168370 actcaggaaggagaggtttt 168389
>gb|AF181477.1|AF181473S5 Mus musculus synaptonemal complex protein 3 (Sycp3) gene, exon 7 Length = 3047 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 440 taccactcaggaaggagaggtttt 463 |||||||||||||||||| ||||| Sbjct: 2819 taccactcaggaaggagatgtttt 2796
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 cggcgaggaagggcggagga 44 |||||||||||||||||||| Sbjct: 22814135 cggcgaggaagggcggagga 22814154
>dbj|AP007258.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1155H11 Length = 51733 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 cggcgaggaagggcggaggagacg 48 ||||||||||||| |||||||||| Sbjct: 27114 cggcgaggaagggaggaggagacg 27091 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 cggcgaggaagggcggaggagacg 48 ||||||||||||| |||||||||| Sbjct: 27043 cggcgaggaagggaggaggagacg 27020
>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0633E08 Length = 136471 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 cggcgaggaagggcggagga 44 |||||||||||||||||||| Sbjct: 101086 cggcgaggaagggcggagga 101105
>dbj|AP006626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1042B08 Length = 142032 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 cggcgaggaagggcggaggagacg 48 ||||||||||||| |||||||||| Sbjct: 135557 cggcgaggaagggaggaggagacg 135534 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 cggcgaggaagggcggaggagacg 48 ||||||||||||| |||||||||| Sbjct: 135486 cggcgaggaagggaggaggagacg 135463
>gb|AC074315.79| Mus musculus strain C57BL/6J clone rp23-445c23 map 15, complete sequence Length = 177864 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 gtggatacttgcacaacacc 415 |||||||||||||||||||| Sbjct: 81866 gtggatacttgcacaacacc 81847
>emb|AL358813.13| Human DNA sequence from clone RP11-353N4 on chromosome 1 Contains the 3' end of a novel gene, a novel gene, a novel pseudogene, a NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) (NHP2L1) pseudogene, two novel genes and two CpG islands, complete sequence Length = 125166 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgc 325 |||||||||||||||||||| Sbjct: 61047 aggacatttgcaagctctgc 61028
>gb|AY105265.1| Zea mays PCO062717 mRNA sequence Length = 2229 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 617 gacgacgacggcgagggggt 636 |||||||||||||||||||| Sbjct: 596 gacgacgacggcgagggggt 577
>emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC gene, disD gene, ORF1, ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10, ORF11, ORF12, ORF13, ORF14, ORF15, ORF16, ORF17, ORF18 and ORF19 Length = 86080 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 603 ggcctgtaggtgttgacgacgacg 626 ||||||||||||| |||||||||| Sbjct: 68760 ggcctgtaggtgtcgacgacgacg 68783
>gb|M76986.1|NEUMTINS Neurospora intermedia mitochondrial DNA with a 1.6 kb insertion Length = 1813 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ttttttaccacattgtttcgtatc 221 |||||||||||||| ||||||||| Sbjct: 1307 ttttttaccacattttttcgtatc 1284
>dbj|AB007962.1| Homo sapiens mRNA, chromosome 1 specific transcript KIAA0493 Length = 5734 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 aggacatttgcaagctctgc 325 |||||||||||||||||||| Sbjct: 2345 aggacatttgcaagctctgc 2326 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,798,310 Number of Sequences: 3902068 Number of extensions: 5798310 Number of successful extensions: 135133 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134540 Number of HSP's gapped (non-prelim): 592 length of query: 644 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 621 effective length of database: 17,143,297,704 effective search space: 10645987874184 effective search space used: 10645987874184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)