ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 208 2e-50
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
3dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.56
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
6gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.56
7ref|XM_631062.1| Dictyostelium discoideum hypothetical protein (... 42 2.2
8gb|DQ228142.1| Mus musculus skeletal muscle cells re-entry induc... 42 2.2
9gb|DQ228141.1| Homo sapiens skeletal muscle cells re-entry induc... 42 2.2
10ref|XM_519942.1| PREDICTED: Pan troglodytes similar to mKIAA0493... 42 2.2
11gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosom... 42 2.2
12ref|XM_359922.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 2.2
13ref|XM_418447.1| PREDICTED: Gallus gallus similar to cochlear ot... 42 2.2
14ref|XM_539156.2| PREDICTED: Canis familiaris similar to F33H2.2 ... 42 2.2
15emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in... 42 2.2
16gb|BC033609.1| Mus musculus DNA segment, Chr 15, ERATO Doi 621, ... 42 2.2
17emb|CR391912.8| Zebrafish DNA sequence from clone CH211-254P10 i... 42 2.2
18emb|BX005078.32| Zebrafish DNA sequence from clone CH211-182N24 ... 42 2.2
19emb|CR354547.10| Zebrafish DNA sequence from clone CH211-126G16 ... 42 2.2
20emb|BX957348.32| Zebrafish DNA sequence from clone CH211-270P4 i... 42 2.2
21dbj|AK137324.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 42 2.2
22emb|CR388361.6| Zebrafish DNA sequence from clone DKEY-87J1 in l... 42 2.2
23emb|CR522997.1| Gallus gallus finished cDNA, clone ChEST794n3 42 2.2
24gb|BC070426.1| Mus musculus DNA segment, Chr 15, ERATO Doi 621, ... 42 2.2
25ref|NM_145959.1| Mus musculus DNA segment, Chr 15, ERATO Doi 621... 42 2.2
26dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
27dbj|AK074370.1| Homo sapiens cDNA FLJ23790 fis, clone HEP21466 42 2.2
28emb|BX640455.19| Zebrafish DNA sequence from clone DKEY-18D13 in... 42 2.2
29emb|BX571961.11| Zebrafish DNA sequence from clone DKEY-205O12 i... 42 2.2
30emb|BX321898.29| Zebrafish DNA sequence from clone DKEYP-34C12 i... 42 2.2
31dbj|AK122297.1| Mus musculus mRNA for mKIAA0493 protein 42 2.2
32ref|NM_144963.2| Homo sapiens family with sequence similarity 91... 42 2.2
33gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
34gb|AC165357.4| Mus musculus BAC clone RP23-114G24 from chromosom... 40 8.8
35gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 8.8
36gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole b... 40 8.8
37gb|AC125486.4| Mus musculus BAC clone RP23-21G7 from chromosome ... 40 8.8
38emb|AL590783.5| Human DNA sequence from clone RP11-397C12 on chr... 40 8.8
39emb|AL356957.27| Human DNA sequence from clone RP11-403I13 on ch... 40 8.8
40gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 8.8
41emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 40 8.8
42emb|AL645783.13| Mouse DNA sequence from clone RP23-459H16 on ch... 40 8.8
43emb|AL589871.13| Mouse DNA sequence from clone RP23-391I11 on ch... 40 8.8
44gb|AF181477.1|AF181473S5 Mus musculus synaptonemal complex prote... 40 8.8
45dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
46dbj|AP007258.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
47dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
48dbj|AP006626.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
49gb|AC074315.79| Mus musculus strain C57BL/6J clone rp23-445c23 m... 40 8.8
50emb|AL358813.13| Human DNA sequence from clone RP11-353N4 on chr... 40 8.8
51gb|AY105265.1| Zea mays PCO062717 mRNA sequence 40 8.8
52emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC... 40 8.8
53gb|M76986.1|NEUMTINS Neurospora intermedia mitochondrial DNA wit... 40 8.8
54dbj|AB007962.1| Homo sapiens mRNA, chromosome 1 specific transcr... 40 8.8 
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score =  208 bits (105), Expect = 2e-50
 Identities = 214/249 (85%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                          
Query: 295    ggcatcaccacaggacatttgcaagctctgcatgcacatcaacaaagatcaacgtattgc 354
              ||||||||||||||  ||||||||||| | || |||||| ||  |||||||||||  |||
Sbjct: 114813 ggcatcaccacaggctatttgcaagctatacaagcacataaatgaagatcaacgtgctgc 114872

                                                                          
Query: 355    tatcagagacatgggaactggaccgttcctcgacatcaagtgtggatacttgcacaacac 414
              ||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||||||||
Sbjct: 114873 tatcagagacatgggtactggagcgttccttgacatcaagtgtggttacttgcacaacac 114932

                                                                          
Query: 415    cgtcgtgacatggttcacaaggttgtaccactcaggaaggagaggttttttcggacctgg 474
              | | |||||||||||||| |||  |||||||||||| |||| ||||||| | |  ||| |
Sbjct: 114933 ccttgtgacatggttcactaggcagtaccactcagggaggaaaggttttgttgtgcctag 114992

                                                                          
Query: 475    acg-cggttcatcccgttgaccaaggaatctgttcattagattttgggcatccctcgtgg 533
              |||  ||||||||||  | ||| |||||||||||||| ||||||||||||| ||||||||
Sbjct: 114993 acgtgggttcatcccactaaccgaggaatctgttcataagattttgggcattcctcgtgg 115052

                       
Query: 534    agacatcga 542
              ||| |||||
Sbjct: 115053 agatatcga 115061



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                          
Query: 206    cacattgtttcgtatcagttgccacttttttccattagtacttgccaaaacaatagttca 265
              |||||||||| ||| ||||||||||||||||||  ||||| |||||||||||||||||||
Sbjct: 114692 cacattgttttgtagcagttgccacttttttcctatagtatttgccaaaacaatagttca 114751
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 568      tacataccctcatggatacgttgcggaa 595
                |||||||||||||||| |||||||||||
Sbjct: 28932909 tacataccctcatggagacgttgcggaa 28932882



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 25       cggcgaggaagggcggaggagacg 48
                ||||||||||||| ||||||||||
Sbjct: 12126709 cggcgaggaagggaggaggagacg 12126686



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 25       cggcgaggaagggcggaggagacg 48
                ||||||||||||| ||||||||||
Sbjct: 12126638 cggcgaggaagggaggaggagacg 12126615
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>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0060O17
          Length = 180015

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 568   tacataccctcatggatacgttgcggaa 595
             |||||||||||||||| |||||||||||
Sbjct: 50446 tacataccctcatggagacgttgcggaa 50419
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                              
Query: 572      taccctcatggatacgttgcggaacttgatgggcctgtaggtgttg 617
                ||||||||||||   |||||||||||| ||||| | ||||||||||
Sbjct: 11948756 taccctcatggaggtgttgcggaacttcatggggcggtaggtgttg 11948801
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                              
Query: 572      taccctcatggatacgttgcggaacttgatgggcctgtaggtgttg 617
                ||||||||||||   |||||||||||| ||||| | ||||||||||
Sbjct: 11945519 taccctcatggaggtgttgcggaacttcatggggcggtaggtgttg 11945564
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>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0014I10, complete sequence
          Length = 113946

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 572   taccctcatggatacgttgcggaacttgatgggcctgtaggtgttg 617
             ||||||||||||   |||||||||||| ||||| | ||||||||||
Sbjct: 50018 taccctcatggaggtgttgcggaacttcatggggcggtaggtgttg 50063
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>ref|XM_631062.1| Dictyostelium discoideum hypothetical protein (DDB0188473), partial
           mRNA
          Length = 741

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 492 gaccaaggaatctgttcatta 512
           |||||||||||||||||||||
Sbjct: 175 gaccaaggaatctgttcatta 195
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>gb|DQ228142.1| Mus musculus skeletal muscle cells re-entry induced mRNA, complete
           cds
          Length = 2630

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 306 aggacatttgcaagctctgca 326
           |||||||||||||||||||||
Sbjct: 841 aggacatttgcaagctctgca 821
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>gb|DQ228141.1| Homo sapiens skeletal muscle cells re-entry induced mRNA, complete
           cds
          Length = 2667

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 306 aggacatttgcaagctctgca 326
           |||||||||||||||||||||
Sbjct: 885 aggacatttgcaagctctgca 865
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>ref|XM_519942.1| PREDICTED: Pan troglodytes similar to mKIAA0493 protein (LOC464374),
            mRNA
          Length = 3627

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 306  aggacatttgcaagctctgca 326
            |||||||||||||||||||||
Sbjct: 1445 aggacatttgcaagctctgca 1425
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>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0096G08 map E1363S, complete sequence
          Length = 140681

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 25    cggcgaggaagggcggaggagacga 49
             |||||||| ||||||||||||||||
Sbjct: 81108 cggcgaggtagggcggaggagacga 81084
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>ref|XM_359922.1| Magnaporthe grisea 70-15 hypothetical protein (MG04855.4) partial
            mRNA
          Length = 5007

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 55   ttccaggtcccgctccagcgc 75
            |||||||||||||||||||||
Sbjct: 2451 ttccaggtcccgctccagcgc 2431
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>ref|XM_418447.1| PREDICTED: Gallus gallus similar to cochlear otoferlin (LOC420340),
           mRNA
          Length = 7269

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 305 caggacatttgcaagctctgc 325
           |||||||||||||||||||||
Sbjct: 99  caggacatttgcaagctctgc 79
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>ref|XM_539156.2| PREDICTED: Canis familiaris similar to F33H2.2 (LOC482035), mRNA
          Length = 5012

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 306  aggacatttgcaagctctgca 326
            |||||||||||||||||||||
Sbjct: 1799 aggacatttgcaagctctgca 1779
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>emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22,
             complete sequence
          Length = 147994

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 10494 aaaaaaatagtacacttcaggttgatgga 10466
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>gb|BC033609.1| Mus musculus DNA segment, Chr 15, ERATO Doi 621, expressed, mRNA
           (cDNA clone MGC:40987 IMAGE:5401763), complete cds
          Length = 4689

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 306 aggacatttgcaagctctgca 326
           |||||||||||||||||||||
Sbjct: 144 aggacatttgcaagctctgca 124
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>emb|CR391912.8| Zebrafish DNA sequence from clone CH211-254P10 in linkage group 16,
              complete sequence
          Length = 151269

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 252    aaaacaatagttcacttcaggttgatgga 280
              ||||||||||| || ||||||||||||||
Sbjct: 101106 aaaacaatagtacatttcaggttgatgga 101134
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>emb|BX005078.32| Zebrafish DNA sequence from clone CH211-182N24 in linkage group 22,
              complete sequence
          Length = 135288

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 252    aaaacaatagttcacttcaggttgatgga 280
              |||| |||||| |||||||||||||||||
Sbjct: 127178 aaaaaaatagtacacttcaggttgatgga 127150



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 252    aaaacaatagttcacttcaggttgatgga 280
              |||| |||||| |||||||||||||||||
Sbjct: 112170 aaaaaaatagtacacttcaggttgatgga 112142



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 97712 aaaaaaatagtacacttcaggttgatgga 97684



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 72753 aaaaaaatagtacacttcaggttgatgga 72725



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 58663 aaaaaaatagtacacttcaggttgatgga 58635



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 31556 aaaaaaatagtacacttcaggttgatgga 31528



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 16470 aaaaaaatagtacacttcaggttgatgga 16442
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>emb|CR354547.10| Zebrafish DNA sequence from clone CH211-126G16 in linkage group 8,
             complete sequence
          Length = 99726

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 64560 aaaaaaatagtacacttcaggttgatgga 64532



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 257   aatagttcacttcaggttgatgga 280
             |||||| |||||||||||||||||
Sbjct: 32695 aatagtacacttcaggttgatgga 32672



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 257  aatagttcacttcaggttgatgga 280
            |||||| |||||||||||||||||
Sbjct: 7092 aatagtacacttcaggttgatgga 7069
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>emb|BX957348.32| Zebrafish DNA sequence from clone CH211-270P4 in linkage group 22,
              complete sequence
          Length = 148056

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 252    aaaacaatagttcacttcaggttgatgga 280
              |||| |||||| |||||||||||||||||
Sbjct: 138931 aaaaaaatagtacacttcaggttgatgga 138903



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 69331 aaaaaaatagtacacttcaggttgatgga 69303



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 55207 aaaaaaatagtacacttcaggttgatgga 55179



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 37766 aaaaaaatagtacacttcaggttgatgga 37738



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 22665 aaaaaaatagtacacttcaggttgatgga 22637
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>dbj|AK137324.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630010D23 product:Similar to
            hypothetical protein F33H2.2-Caenorhabditis elegans
            homolog [Homo sapiens], full insert sequence
          Length = 4767

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 306  aggacatttgcaagctctgca 326
            |||||||||||||||||||||
Sbjct: 1063 aggacatttgcaagctctgca 1043
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>emb|CR388361.6| Zebrafish DNA sequence from clone DKEY-87J1 in linkage group 22,
            complete sequence
          Length = 64922

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 252  aaaacaatagttcacttcaggttgatgga 280
            |||| |||||| |||||||||||||||||
Sbjct: 7008 aaaaaaatagtacacttcaggttgatgga 6980
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>emb|CR522997.1| Gallus gallus finished cDNA, clone ChEST794n3
          Length = 1006

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 305 caggacatttgcaagctctgc 325
           |||||||||||||||||||||
Sbjct: 306 caggacatttgcaagctctgc 286
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>gb|BC070426.1| Mus musculus DNA segment, Chr 15, ERATO Doi 621, expressed, mRNA
            (cDNA clone IMAGE:6405871)
          Length = 5567

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 306  aggacatttgcaagctctgca 326
            |||||||||||||||||||||
Sbjct: 1048 aggacatttgcaagctctgca 1028
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>ref|NM_145959.1| Mus musculus DNA segment, Chr 15, ERATO Doi 621, expressed
           (D15Ertd621e), mRNA
          Length = 4689

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 306 aggacatttgcaagctctgca 326
           |||||||||||||||||||||
Sbjct: 144 aggacatttgcaagctctgca 124
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 25       cggcgaggaagggcggaggagacga 49
                |||||||| ||||||||||||||||
Sbjct: 19820070 cggcgaggtagggcggaggagacga 19820046
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>dbj|AK074370.1| Homo sapiens cDNA FLJ23790 fis, clone HEP21466
          Length = 2244

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 306 aggacatttgcaagctctgca 326
           |||||||||||||||||||||
Sbjct: 395 aggacatttgcaagctctgca 375
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>emb|BX640455.19| Zebrafish DNA sequence from clone DKEY-18D13 in linkage group 22,
             complete sequence
          Length = 75725

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 71134 aaaaaaatagtacacttcaggttgatgga 71106



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 56094 aaaaaaatagtacacttcaggttgatgga 56066



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 252   aaaacaatagttcacttcaggttgatgga 280
             |||| |||||| |||||||||||||||||
Sbjct: 30786 aaaaaaatagtacacttcaggttgatgga 30758
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>emb|BX571961.11| Zebrafish DNA sequence from clone DKEY-205O12 in linkage group 22,
              complete sequence
          Length = 149478

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 252    aaaacaatagttcacttcaggttgatgga 280
              |||| |||||| |||||||||||||||||
Sbjct: 146518 aaaaaaatagtacacttcaggttgatgga 146490
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>emb|BX321898.29| Zebrafish DNA sequence from clone DKEYP-34C12 in linkage group 22,
              complete sequence
          Length = 195042

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 252    aaaacaatagttcacttcaggttgatgga 280
              |||| |||||| |||||||||||||||||
Sbjct: 179785 aaaaaaatagtacacttcaggttgatgga 179813
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>dbj|AK122297.1| Mus musculus mRNA for mKIAA0493 protein
          Length = 5407

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 306 aggacatttgcaagctctgca 326
           |||||||||||||||||||||
Sbjct: 912 aggacatttgcaagctctgca 892
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>ref|NM_144963.2| Homo sapiens family with sequence similarity 91, member A1
           (FAM91A1), mRNA
          Length = 5347

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 306 aggacatttgcaagctctgca 326
           |||||||||||||||||||||
Sbjct: 885 aggacatttgcaagctctgca 865
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 25       cggcgaggaagggcggaggagacga 49
                |||||||| ||||||||||||||||
Sbjct: 19831346 cggcgaggtagggcggaggagacga 19831322
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>gb|AC165357.4| Mus musculus BAC clone RP23-114G24 from chromosome 10, complete
             sequence
          Length = 216816

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 440   taccactcaggaaggagaggtttt 463
             |||||||||||||||||| |||||
Sbjct: 61504 taccactcaggaaggagatgtttt 61527
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 70      cagcgccggcgcgcaggcaa 89
               ||||||||||||||||||||
Sbjct: 1630243 cagcgccggcgcgcaggcaa 1630224
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>gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole biosynthesis gene
             cluster, complete sequence
          Length = 84868

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 603   ggcctgtaggtgttgacgacgacg 626
             ||||||||||||| ||||||||||
Sbjct: 68842 ggcctgtaggtgtcgacgacgacg 68865
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>gb|AC125486.4| Mus musculus BAC clone RP23-21G7 from chromosome 10, complete
            sequence
          Length = 222316

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 440  taccactcaggaaggagaggtttt 463
            |||||||||||||||||| |||||
Sbjct: 8519 taccactcaggaaggagatgtttt 8542
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>emb|AL590783.5| Human DNA sequence from clone RP11-397C12 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 157356

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 178   ttttacatttttggctcccctttt 201
             ||||||||||||||||| ||||||
Sbjct: 62814 ttttacatttttggctcacctttt 62837
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>emb|AL356957.27| Human DNA sequence from clone RP11-403I13 on chromosome 1 Contains the 5'
              end of a novel pseudogene, a profilin 1 (PFN1) pseudogene,
              six novel genes and a novel pseudogene, complete sequence
          Length = 204702

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    aggacatttgcaagctctgc 325
              ||||||||||||||||||||
Sbjct: 153121 aggacatttgcaagctctgc 153102
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 57     ccaggtcccgctccagcgccggcgcgca 84
              |||||||| || ||||||||||||||||
Sbjct: 449691 ccaggtcctgcgccagcgccggcgcgca 449664
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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     cccgctccagcgccggcgcg 82
              ||||||||||||||||||||
Sbjct: 275720 cccgctccagcgccggcgcg 275701
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>emb|AL645783.13| Mouse DNA sequence from clone RP23-459H16 on chromosome 13 Contains the
             Foxc1 gene for forkhead box C1, a novel gene, the 3' end
             of the Gmds gene forGDP-mannose 4,6-dehydratase and two
             CpG islands, complete sequence
          Length = 98685

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 313   ttgcaagctctgcatgcacatcaa 336
             |||||||||||||||| |||||||
Sbjct: 79514 ttgcaagctctgcatgtacatcaa 79537
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>emb|AL589871.13| Mouse DNA sequence from clone RP23-391I11 on chromosome 13 Contains the
              5' end of the gene for a novel serine (or cysteine)
              proteinase inhibitor clade B (Serpinb) or serine protease
              inhibitor (Spi) family member, the Spi12 and Spi6 genes for
              serine protease inhibitors 12 and 6, the the genes for
              serine (or cysteine) proteinase inhibitor clade B member 9b
              (Serpinb9b) and clade B (ovalbumin) member 1b (Serpinb1b),
              a serine protease inhibitor (Spi) pseudogene  and a
              prohibitin (Phb) pseudogene, complete sequence
          Length = 217643

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 444    actcaggaaggagaggtttt 463
              ||||||||||||||||||||
Sbjct: 168370 actcaggaaggagaggtttt 168389
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>gb|AF181477.1|AF181473S5 Mus musculus synaptonemal complex protein 3 (Sycp3) gene, exon 7
          Length = 3047

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 440  taccactcaggaaggagaggtttt 463
            |||||||||||||||||| |||||
Sbjct: 2819 taccactcaggaaggagatgtttt 2796
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 25       cggcgaggaagggcggagga 44
                ||||||||||||||||||||
Sbjct: 22814135 cggcgaggaagggcggagga 22814154
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>dbj|AP007258.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1155H11
          Length = 51733

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    cggcgaggaagggcggaggagacg 48
             ||||||||||||| ||||||||||
Sbjct: 27114 cggcgaggaagggaggaggagacg 27091



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    cggcgaggaagggcggaggagacg 48
             ||||||||||||| ||||||||||
Sbjct: 27043 cggcgaggaagggaggaggagacg 27020
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>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0633E08
          Length = 136471

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     cggcgaggaagggcggagga 44
              ||||||||||||||||||||
Sbjct: 101086 cggcgaggaagggcggagga 101105
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>dbj|AP006626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1042B08
          Length = 142032

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 25     cggcgaggaagggcggaggagacg 48
              ||||||||||||| ||||||||||
Sbjct: 135557 cggcgaggaagggaggaggagacg 135534



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 25     cggcgaggaagggcggaggagacg 48
              ||||||||||||| ||||||||||
Sbjct: 135486 cggcgaggaagggaggaggagacg 135463
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>gb|AC074315.79| Mus musculus strain C57BL/6J clone rp23-445c23 map 15, complete
             sequence
          Length = 177864

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 396   gtggatacttgcacaacacc 415
             ||||||||||||||||||||
Sbjct: 81866 gtggatacttgcacaacacc 81847
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>emb|AL358813.13| Human DNA sequence from clone RP11-353N4 on chromosome 1 Contains the
             3' end of a novel gene, a novel gene, a novel pseudogene,
             a NHP2 non-histone chromosome protein 2-like 1 (S.
             cerevisiae) (NHP2L1) pseudogene, two novel genes and two
             CpG islands, complete sequence
          Length = 125166

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   aggacatttgcaagctctgc 325
             ||||||||||||||||||||
Sbjct: 61047 aggacatttgcaagctctgc 61028
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>gb|AY105265.1| Zea mays PCO062717 mRNA sequence
          Length = 2229

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 617 gacgacgacggcgagggggt 636
           ||||||||||||||||||||
Sbjct: 596 gacgacgacggcgagggggt 577
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>emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC gene, disD gene, ORF1,
             ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10,
             ORF11, ORF12, ORF13, ORF14, ORF15, ORF16, ORF17, ORF18 and
             ORF19
          Length = 86080

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 603   ggcctgtaggtgttgacgacgacg 626
             ||||||||||||| ||||||||||
Sbjct: 68760 ggcctgtaggtgtcgacgacgacg 68783
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>gb|M76986.1|NEUMTINS Neurospora intermedia mitochondrial DNA with a 1.6 kb insertion
          Length = 1813

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 198  ttttttaccacattgtttcgtatc 221
            |||||||||||||| |||||||||
Sbjct: 1307 ttttttaccacattttttcgtatc 1284
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>dbj|AB007962.1| Homo sapiens mRNA, chromosome 1 specific transcript KIAA0493
          Length = 5734

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  aggacatttgcaagctctgc 325
            ||||||||||||||||||||
Sbjct: 2345 aggacatttgcaagctctgc 2326


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,798,310
Number of Sequences: 3902068
Number of extensions: 5798310
Number of successful extensions: 135133
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134540
Number of HSP's gapped (non-prelim): 592
length of query: 644
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 621
effective length of database: 17,143,297,704
effective search space: 10645987874184
effective search space used: 10645987874184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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