ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3c22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194620.1| Oryza sativa (japonica cultivar-group) putative... 86 1e-13
2gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
3gb|AC079179.5| Oryza sativa chromosome 10 clone OSJNBa0079B05, c... 86 1e-13
4gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, c... 86 1e-13
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
6dbj|AK069721.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
9dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
10dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
11dbj|AK072740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
12ref|NM_194623.1| Oryza sativa (japonica cultivar-group) putative... 78 3e-11
13dbj|AK069308.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
14gb|U76384.1|TAU76384 Triticum aestivum o-methyltransferase mRNA,... 50 0.008
15gb|AC121783.2| Mus musculus BAC clone RP23-370I9 from 18, comple... 46 0.12
16ref|NM_001003124.1| Canis familiaris chloride channel 1, skeleta... 42 1.9
17ref|XM_850473.1| PREDICTED: Canis familiaris skeletal muscle chl... 42 1.9
18gb|AF162445.2|AF162445 Canis familiaris skeletal muscle chloride... 42 1.9
19ref|XM_517099.1| PREDICTED: Pan troglodytes similar to VPS10 dom... 40 7.4
20ref|NM_020777.1| Homo sapiens sortilin-related VPS10 domain cont... 40 7.4
21emb|CR942271.10| Human DNA sequence from clone DAMC-325F20 on ch... 40 7.4
22ref|XM_381518.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 7.4
23emb|AL805917.3| Human DNA sequence from clone DAQB-10J12 on chro... 40 7.4
24emb|AL662870.16| Human DNA sequence from clone XXbac-70P20 on ch... 40 7.4
25emb|AL662848.6| Human DNA sequence from clone XXbac-111D4 on chr... 40 7.4
26gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 7.4
27emb|AL121988.10|HSDJ34M23 Human DNA sequence from clone RP1-34M2... 40 7.4
28emb|CR753093.2| Human DNA sequence from clone DADB-32E8 on chrom... 40 7.4
29dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 7.4
30gb|AC095050.3| Homo sapiens BAC clone RP11-287F9 from 4, complet... 40 7.4
31emb|BX927194.9| Human DNA sequence from clone DAMA-342O2 on chro... 40 7.4
32dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 7.4
33gb|AC004169.3|AC004169 Homo sapiens chromosome 4 clone C0236G06 ... 40 7.4
34gb|AC006167.1|AC006167 Homo sapiens clone UWGC:y67c092 from 6p21... 40 7.4
35emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete ... 40 7.4
36dbj|AB037750.1| Homo sapiens mRNA for KIAA1329 protein, partial cds 40 7.4
37dbj|AB023050.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 7.4 
>ref|NM_194620.1| Oryza sativa (japonica cultivar-group) putative o-methyltransferase
           ZRP4 (OSJNBa0023I19.18), mRNA
          Length = 1101

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 153/192 (79%)
 Strand = Plus / Plus

                                                                       
Query: 40  tccaagctcagttcgacctctaccaccactgcttcgtctatgtgaagtccatggcgctcg 99
           |||||||| || |||| ||||||||||||||||||| ||   | ||||||| ||| ||  
Sbjct: 56  tccaagctgagatcgagctctaccaccactgcttcgccttcatcaagtccacggcactta 115

                                                                       
Query: 100 gtgccgccaccgatctgcgcattcccgacgccatccacctcannnnnnntgctgccacct 159
           | |||||||| || ||| ||||| |||| |||||||||| ||        ||||||||||
Sbjct: 116 gggccgccactgacctgtgcatttccgatgccatccaccgcaatggcggcgctgccacct 175

                                                                       
Query: 160 tgtcggatcttgccgccgatacagggatctacccgacgaagctctcccacctccggtggc 219
           |||| || || |||  | |||  ||| |  |||||||||||||||||||||||||| |||
Sbjct: 176 tgtctgacctcgccctcaatatcgggctgcacccgacgaagctctcccacctccggcggc 235

                       
Query: 220 tcatgcgcgtgc 231
           ||||||||||||
Sbjct: 236 tcatgcgcgtgc 247



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 459 gaggtggcgcacggctgtacacgatgggagatgatagcaaa 499
           |||||||||||||| || || || |||||||| ||||||||
Sbjct: 463 gaggtggcgcacggttgcacgcggtgggagattatagcaaa 503
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                           
Query: 40      tccaagctcagttcgacctctaccaccactgcttcgtctatgtgaagtccatggcgctcg 99
               |||||||| || |||| ||||||||||||||||||| ||   | ||||||| ||| ||  
Sbjct: 1120357 tccaagctgagatcgagctctaccaccactgcttcgccttcatcaagtccacggcactta 1120298

                                                                           
Query: 100     gtgccgccaccgatctgcgcattcccgacgccatccacctcannnnnnntgctgccacct 159
               | |||||||| || ||| ||||| |||| |||||||||| ||        ||||||||||
Sbjct: 1120297 gggccgccactgacctgtgcatttccgatgccatccaccgcaatggcggcgctgccacct 1120238

                                                                           
Query: 160     tgtcggatcttgccgccgatacagggatctacccgacgaagctctcccacctccggtggc 219
               |||| || || |||  | |||  ||| |  |||||||||||||||||||||||||| |||
Sbjct: 1120237 tgtctgacctcgccctcaatatcgggctgcacccgacgaagctctcccacctccggcggc 1120178

                           
Query: 220     tcatgcgcgtgc 231
               ||||||||||||
Sbjct: 1120177 tcatgcgcgtgc 1120166



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                              
Query: 190     acccgacgaagctctcccacctccggtggctcatgcgcgtgctcacc 236
               ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 1143253 acccgaccaagctctcccacctccggcggctcatgcgcgtgctcacc 1143207



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                  
Query: 36      ttgctccaagctcagttcgacctctaccaccactg 70
               ||||||||||||||| |||| ||||||||||||||
Sbjct: 1153919 ttgctccaagctcagatcgagctctaccaccactg 1153885



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 40      tccaagctcagttcgacctctaccaccactgcttcg 75
               ||||||||||| || | |||||||||||||||||||
Sbjct: 1143403 tccaagctcagatcaagctctaccaccactgcttcg 1143368



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                        
Query: 459     gaggtggcgcacggctgtacacgatgggagatgatagcaaa 499
               |||||||||||||| || || || |||||||| ||||||||
Sbjct: 1119950 gaggtggcgcacggttgcacgcggtgggagattatagcaaa 1119910
to top
>gb|AC079179.5| Oryza sativa chromosome 10 clone OSJNBa0079B05, complete sequence
          Length = 145526

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                        
Query: 40   tccaagctcagttcgacctctaccaccactgcttcgtctatgtgaagtccatggcgctcg 99
            |||||||| || |||| ||||||||||||||||||| ||   | ||||||| ||| ||  
Sbjct: 4595 tccaagctgagatcgagctctaccaccactgcttcgccttcatcaagtccacggcactta 4536

                                                                        
Query: 100  gtgccgccaccgatctgcgcattcccgacgccatccacctcannnnnnntgctgccacct 159
            | |||||||| || ||| ||||| |||| |||||||||| ||        ||||||||||
Sbjct: 4535 gggccgccactgacctgtgcatttccgatgccatccaccgcaatggcggcgctgccacct 4476

                                                                        
Query: 160  tgtcggatcttgccgccgatacagggatctacccgacgaagctctcccacctccggtggc 219
            |||| || || |||  | |||  ||| |  |||||||||||||||||||||||||| |||
Sbjct: 4475 tgtctgacctcgccctcaatatcgggctgcacccgacgaagctctcccacctccggcggc 4416

                        
Query: 220  tcatgcgcgtgc 231
            ||||||||||||
Sbjct: 4415 tcatgcgcgtgc 4404



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                            
Query: 190   acccgacgaagctctcccacctccggtggctcatgcgcgtgctcacc 236
             ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 27491 acccgaccaagctctcccacctccggcggctcatgcgcgtgctcacc 27445



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 36    ttgctccaagctcagttcgacctctaccaccactg 70
             ||||||||||||||| |||| ||||||||||||||
Sbjct: 38157 ttgctccaagctcagatcgagctctaccaccactg 38123



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 40    tccaagctcagttcgacctctaccaccactgcttcg 75
             ||||||||||| || | |||||||||||||||||||
Sbjct: 27641 tccaagctcagatcaagctctaccaccactgcttcg 27606



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 459  gaggtggcgcacggctgtacacgatgggagatgatagcaaa 499
            |||||||||||||| || || || |||||||| ||||||||
Sbjct: 4188 gaggtggcgcacggttgcacgcggtgggagattatagcaaa 4148
to top
>gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, complete sequence
          Length = 157450

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                          
Query: 40     tccaagctcagttcgacctctaccaccactgcttcgtctatgtgaagtccatggcgctcg 99
              |||||||| || |||| ||||||||||||||||||| ||   | ||||||| ||| ||  
Sbjct: 117810 tccaagctgagatcgagctctaccaccactgcttcgccttcatcaagtccacggcactta 117751

                                                                          
Query: 100    gtgccgccaccgatctgcgcattcccgacgccatccacctcannnnnnntgctgccacct 159
              | |||||||| || ||| ||||| |||| |||||||||| ||        ||||||||||
Sbjct: 117750 gggccgccactgacctgtgcatttccgatgccatccaccgcaatggcggcgctgccacct 117691

                                                                          
Query: 160    tgtcggatcttgccgccgatacagggatctacccgacgaagctctcccacctccggtggc 219
              |||| || || |||  | |||  ||| |  |||||||||||||||||||||||||| |||
Sbjct: 117690 tgtctgacctcgccctcaatatcgggctgcacccgacgaagctctcccacctccggcggc 117631

                          
Query: 220    tcatgcgcgtgc 231
              ||||||||||||
Sbjct: 117630 tcatgcgcgtgc 117619



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                             
Query: 190    acccgacgaagctctcccacctccggtggctcatgcgcgtgctcacc 236
              ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 140706 acccgaccaagctctcccacctccggcggctcatgcgcgtgctcacc 140660



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                 
Query: 36     ttgctccaagctcagttcgacctctaccaccactg 70
              ||||||||||||||| |||| ||||||||||||||
Sbjct: 151372 ttgctccaagctcagatcgagctctaccaccactg 151338



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 40     tccaagctcagttcgacctctaccaccactgcttcg 75
              ||||||||||| || | |||||||||||||||||||
Sbjct: 140856 tccaagctcagatcaagctctaccaccactgcttcg 140821



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 459    gaggtggcgcacggctgtacacgatgggagatgatagcaaa 499
              |||||||||||||| || || || |||||||| ||||||||
Sbjct: 117403 gaggtggcgcacggttgcacgcggtgggagattatagcaaa 117363
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                           
Query: 40      tccaagctcagttcgacctctaccaccactgcttcgtctatgtgaagtccatggcgctcg 99
               |||||||| || |||| ||||||||||||||||||| ||   | ||||||| ||| ||  
Sbjct: 1120357 tccaagctgagatcgagctctaccaccactgcttcgccttcatcaagtccacggcactta 1120298

                                                                           
Query: 100     gtgccgccaccgatctgcgcattcccgacgccatccacctcannnnnnntgctgccacct 159
               | |||||||| || ||| ||||| |||| |||||||||| ||        ||||||||||
Sbjct: 1120297 gggccgccactgacctgtgcatttccgatgccatccaccgcaatggcggcgctgccacct 1120238

                                                                           
Query: 160     tgtcggatcttgccgccgatacagggatctacccgacgaagctctcccacctccggtggc 219
               |||| || || |||  | |||  ||| |  |||||||||||||||||||||||||| |||
Sbjct: 1120237 tgtctgacctcgccctcaatatcgggctgcacccgacgaagctctcccacctccggcggc 1120178

                           
Query: 220     tcatgcgcgtgc 231
               ||||||||||||
Sbjct: 1120177 tcatgcgcgtgc 1120166



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                              
Query: 190     acccgacgaagctctcccacctccggtggctcatgcgcgtgctcacc 236
               ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 1143253 acccgaccaagctctcccacctccggcggctcatgcgcgtgctcacc 1143207



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                  
Query: 36      ttgctccaagctcagttcgacctctaccaccactg 70
               ||||||||||||||| |||| ||||||||||||||
Sbjct: 1153919 ttgctccaagctcagatcgagctctaccaccactg 1153885



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 40      tccaagctcagttcgacctctaccaccactgcttcg 75
               ||||||||||| || | |||||||||||||||||||
Sbjct: 1143403 tccaagctcagatcaagctctaccaccactgcttcg 1143368



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                        
Query: 459     gaggtggcgcacggctgtacacgatgggagatgatagcaaa 499
               |||||||||||||| || || || |||||||| ||||||||
Sbjct: 1119950 gaggtggcgcacggttgcacgcggtgggagattatagcaaa 1119910
to top
>dbj|AK069721.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028O22, full
           insert sequence
          Length = 1269

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 153/192 (79%)
 Strand = Plus / Plus

                                                                       
Query: 40  tccaagctcagttcgacctctaccaccactgcttcgtctatgtgaagtccatggcgctcg 99
           |||||||| || |||| ||||||||||||||||||| ||   | ||||||| ||| ||  
Sbjct: 85  tccaagctgagatcgagctctaccaccactgcttcgccttcatcaagtccacggcactta 144

                                                                       
Query: 100 gtgccgccaccgatctgcgcattcccgacgccatccacctcannnnnnntgctgccacct 159
           | |||||||| || ||| ||||| |||| |||||||||| ||        ||||||||||
Sbjct: 145 gggccgccactgacctgtgcatttccgatgccatccaccgcaatggcggcgctgccacct 204

                                                                       
Query: 160 tgtcggatcttgccgccgatacagggatctacccgacgaagctctcccacctccggtggc 219
           |||| || || |||  | |||  ||| |  |||||||||||||||||||||||||| |||
Sbjct: 205 tgtctgacctcgccctcaatatcgggctgcacccgacgaagctctcccacctccggcggc 264

                       
Query: 220 tcatgcgcgtgc 231
           ||||||||||||
Sbjct: 265 tcatgcgcgtgc 276



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 459 gaggtggcgcacggctgtacacgatgggagatgatagcaaa 499
           |||||||||||||| || || || |||||||| ||||||||
Sbjct: 365 gaggtggcgcacggttgcacgcggtgggagattatagcaaa 405
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                           
Query: 40      tccaagctcagttcgacctctaccaccactgcttcgtctatgtgaagtccatggcgctcg 99
               |||||||| || |||| ||||||||||||||||||| ||   | ||||||| ||| ||  
Sbjct: 1120354 tccaagctgagatcgagctctaccaccactgcttcgccttcatcaagtccacggcactta 1120295

                                                                           
Query: 100     gtgccgccaccgatctgcgcattcccgacgccatccacctcannnnnnntgctgccacct 159
               | |||||||| || ||| ||||| |||| |||||||||| ||        ||||||||||
Sbjct: 1120294 gggccgccactgacctgtgcatttccgatgccatccaccgcaatggcggcgctgccacct 1120235

                                                                           
Query: 160     tgtcggatcttgccgccgatacagggatctacccgacgaagctctcccacctccggtggc 219
               |||| || || |||  | |||  ||| |  |||||||||||||||||||||||||| |||
Sbjct: 1120234 tgtctgacctcgccctcaatatcgggctgcacccgacgaagctctcccacctccggcggc 1120175

                           
Query: 220     tcatgcgcgtgc 231
               ||||||||||||
Sbjct: 1120174 tcatgcgcgtgc 1120163



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                              
Query: 190     acccgacgaagctctcccacctccggtggctcatgcgcgtgctcacc 236
               ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 1143250 acccgaccaagctctcccacctccggcggctcatgcgcgtgctcacc 1143204



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                  
Query: 36      ttgctccaagctcagttcgacctctaccaccactg 70
               ||||||||||||||| |||| ||||||||||||||
Sbjct: 1153916 ttgctccaagctcagatcgagctctaccaccactg 1153882



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 40      tccaagctcagttcgacctctaccaccactgcttcg 75
               ||||||||||| || | |||||||||||||||||||
Sbjct: 1143400 tccaagctcagatcaagctctaccaccactgcttcg 1143365



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                        
Query: 459     gaggtggcgcacggctgtacacgatgggagatgatagcaaa 499
               |||||||||||||| || || || |||||||| ||||||||
Sbjct: 1119947 gaggtggcgcacggttgcacgcggtgggagattatagcaaa 1119907
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 87/102 (85%)
 Strand = Plus / Minus

                                                                            
Query: 36       ttgctccaagctcagttcgacctctaccaccactgcttcgtctatgtgaagtccatggcg 95
                ||||||||||||||| |||| ||||||||||||||||| | ||   | ||||||||||| 
Sbjct: 10688974 ttgctccaagctcagatcgagctctaccaccactgcttggccttcatcaagtccatggca 10688915

                                                          
Query: 96       ctcggtgccgccaccgatctgcgcattcccgacgccatccac 137
                ||  | |||||||| || ||||| ||||||||||||||||||
Sbjct: 10688914 cttagggccgccactgacctgcgtattcccgacgccatccac 10688873



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                              
Query: 190      acccgacgaagctctcccacctccggtggctcatgcgcgtgctcac 235
                |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 10688820 acccgacgaagctctcccaccttcggcggctcatgcgcgtgctcac 10688775



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                            
Query: 459      gaggtggcgcacggctgtacacgatgggagatgatagcaaaggacgccggtgacgaccgc 518
                ||||||||||||||||| || || ||||| ||||||||||| ||  ||   |||| | ||
Sbjct: 10688563 gaggtggcgcacggctgcacccgttgggaaatgatagcaaacgattccaaagacggcagc 10688504

                                   
Query: 519      ttgttcaatgccggcatgg 537
                 ||||||||||||||||||
Sbjct: 10688503 atgttcaatgccggcatgg 10688485
to top
>dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0057I13
          Length = 156330

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 87/102 (85%)
 Strand = Plus / Minus

                                                                          
Query: 36     ttgctccaagctcagttcgacctctaccaccactgcttcgtctatgtgaagtccatggcg 95
              ||||||||||||||| |||| ||||||||||||||||| | ||   | ||||||||||| 
Sbjct: 141286 ttgctccaagctcagatcgagctctaccaccactgcttggccttcatcaagtccatggca 141227

                                                        
Query: 96     ctcggtgccgccaccgatctgcgcattcccgacgccatccac 137
              ||  | |||||||| || ||||| ||||||||||||||||||
Sbjct: 141226 cttagggccgccactgacctgcgtattcccgacgccatccac 141185



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                            
Query: 190    acccgacgaagctctcccacctccggtggctcatgcgcgtgctcac 235
              |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 141132 acccgacgaagctctcccaccttcggcggctcatgcgcgtgctcac 141087



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                          
Query: 459    gaggtggcgcacggctgtacacgatgggagatgatagcaaaggacgccggtgacgaccgc 518
              ||||||||||||||||| || || ||||| ||||||||||| ||  ||   |||| | ||
Sbjct: 140875 gaggtggcgcacggctgcacccgttgggaaatgatagcaaacgattccaaagacggcagc 140816

                                 
Query: 519    ttgttcaatgccggcatgg 537
               ||||||||||||||||||
Sbjct: 140815 atgttcaatgccggcatgg 140797
to top
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0085I16
          Length = 141701

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 87/102 (85%)
 Strand = Plus / Minus

                                                                         
Query: 36    ttgctccaagctcagttcgacctctaccaccactgcttcgtctatgtgaagtccatggcg 95
             ||||||||||||||| |||| ||||||||||||||||| | ||   | ||||||||||| 
Sbjct: 25592 ttgctccaagctcagatcgagctctaccaccactgcttggccttcatcaagtccatggca 25533

                                                       
Query: 96    ctcggtgccgccaccgatctgcgcattcccgacgccatccac 137
             ||  | |||||||| || ||||| ||||||||||||||||||
Sbjct: 25532 cttagggccgccactgacctgcgtattcccgacgccatccac 25491



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                           
Query: 190   acccgacgaagctctcccacctccggtggctcatgcgcgtgctcac 235
             |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 25438 acccgacgaagctctcccaccttcggcggctcatgcgcgtgctcac 25393



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                         
Query: 459   gaggtggcgcacggctgtacacgatgggagatgatagcaaaggacgccggtgacgaccgc 518
             ||||||||||||||||| || || ||||| ||||||||||| ||  ||   |||| | ||
Sbjct: 25181 gaggtggcgcacggctgcacccgttgggaaatgatagcaaacgattccaaagacggcagc 25122

                                
Query: 519   ttgttcaatgccggcatgg 537
              ||||||||||||||||||
Sbjct: 25121 atgttcaatgccggcatgg 25103
to top
>dbj|AK072740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134H21, full
           insert sequence
          Length = 1466

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                       
Query: 36  ttgctccaagctcagttcgacctctaccaccactgcttcgtctatgtgaagtccatggcg 95
           ||||||||||||||| |||| ||||||||||||||||| | ||   | ||||||||||| 
Sbjct: 85  ttgctccaagctcagatcgagctctaccaccactgcttggccttcatcaagtccatggca 144

                                                     
Query: 96  ctcggtgccgccaccgatctgcgcattcccgacgccatccac 137
           ||  | |||||||| || ||||| ||||||||||||||||||
Sbjct: 145 cttagggccgccactgacctgcgtattcccgacgccatccac 186



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                         
Query: 190 acccgacgaagctctcccacctccggtggctcatgcgcgtgctcac 235
           |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 239 acccgacgaagctctcccaccttcggcggctcatgcgcgtgctcac 284



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                       
Query: 459 gaggtggcgcacggctgtacacgatgggagatgatagcaaaggacgccggtgacgaccgc 518
           ||||||||||||||||| || || ||||| ||||||||||| ||  ||   |||| | ||
Sbjct: 496 gaggtggcgcacggctgcacccgttgggaaatgatagcaaacgattccaaagacggcagc 555

                              
Query: 519 ttgttcaatgccggcatgg 537
            ||||||||||||||||||
Sbjct: 556 atgttcaatgccggcatgg 574
to top
>ref|NM_194623.1| Oryza sativa (japonica cultivar-group) putative o-methyltransferase
           ZRP4 (OSJNBa0023I19.21), mRNA
          Length = 1101

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                          
Query: 190 acccgacgaagctctcccacctccggtggctcatgcgcgtgctcacc 236
           ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 206 acccgaccaagctctcccacctccggcggctcatgcgcgtgctcacc 252



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 40 tccaagctcagttcgacctctaccaccactgcttcg 75
          ||||||||||| || | |||||||||||||||||||
Sbjct: 56 tccaagctcagatcaagctctaccaccactgcttcg 91
to top
>dbj|AK069308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012K03, full
           insert sequence
          Length = 1483

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                          
Query: 190 acccgacgaagctctcccacctccggtggctcatgcgcgtgctcacc 236
           ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 242 acccgaccaagctctcccacctccggcggctcatgcgcgtgctcacc 288



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 40  tccaagctcagttcgacctctaccaccactgcttcg 75
           ||||||||||| || | |||||||||||||||||||
Sbjct: 92  tccaagctcagatcaagctctaccaccactgcttcg 127
to top
>gb|U76384.1|TAU76384 Triticum aestivum o-methyltransferase mRNA, complete cds
          Length = 1458

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 219 ctcatgcgcgtgctcaccacctcgggtgtcttctccg 255
           ||||||||||||||||||  |||||| ||||||||||
Sbjct: 277 ctcatgcgcgtgctcaccgtctcgggcgtcttctccg 313
to top
>gb|AC121783.2| Mus musculus BAC clone RP23-370I9 from 18, complete sequence
          Length = 184366

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   agctcacgccgccatgacctctc 355
             |||||||||||||||||||||||
Sbjct: 49726 agctcacgccgccatgacctctc 49748
to top
>ref|NM_001003124.1| Canis familiaris chloride channel 1, skeletal muscle (Thomsen
            disease, autosomal dominant) (CLCN1), mRNA
          Length = 4717

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 382  ctgtccccatcactgctctcttcag 406
            ||||| |||||||||||||||||||
Sbjct: 1069 ctgtcaccatcactgctctcttcag 1093
to top
>ref|XM_850473.1| PREDICTED: Canis familiaris skeletal muscle chloride channel ClC-1
            (CLCN1), mRNA
          Length = 4715

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 382  ctgtccccatcactgctctcttcag 406
            ||||| |||||||||||||||||||
Sbjct: 1068 ctgtcaccatcactgctctcttcag 1092
to top
>gb|AF162445.2|AF162445 Canis familiaris skeletal muscle chloride channel ClC-1 (CLCN1) mRNA,
            complete cds
          Length = 4717

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 382  ctgtccccatcactgctctcttcag 406
            ||||| |||||||||||||||||||
Sbjct: 1069 ctgtcaccatcactgctctcttcag 1093
to top
>ref|XM_517099.1| PREDICTED: Pan troglodytes similar to VPS10 domain receptor protein
            SORCS 2; VPS10 domain receptor protein (LOC461109), mRNA
          Length = 9210

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 431  aaagagcaccgcctcatcgt 450
            ||||||||||||||||||||
Sbjct: 7890 aaagagcaccgcctcatcgt 7871
to top
>ref|NM_020777.1| Homo sapiens sortilin-related VPS10 domain containing receptor 2
            (SORCS2), mRNA
          Length = 5963

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 431  aaagagcaccgcctcatcgt 450
            ||||||||||||||||||||
Sbjct: 2500 aaagagcaccgcctcatcgt 2481
to top
>emb|CR942271.10| Human DNA sequence from clone DAMC-325F20 on chromosome 6, complete
             sequence
          Length = 52666

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   tgaggtggcgcacggctgta 477
             ||||||||||||||||||||
Sbjct: 35355 tgaggtggcgcacggctgta 35336
to top
>ref|XM_381518.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01342.1)
            partial mRNA
          Length = 1431

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  acgaaaagagcaccgcctca 446
            ||||||||||||||||||||
Sbjct: 1256 acgaaaagagcaccgcctca 1275
to top
>emb|AL805917.3| Human DNA sequence from clone DAQB-10J12 on chromosome 6 Contains the
             TIGD1L gene for tigger transposable element derived
             1-like, the 5' end of the C6orf214 gene for chromosome 6
             open reading frame 214, the 5' end of the DDR1 gene for
             discoidin domain receptor family, member 1, and 1 CpG
             island, complete sequence
          Length = 65373

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   tgaggtggcgcacggctgta 477
             ||||||||||||||||||||
Sbjct: 55087 tgaggtggcgcacggctgta 55068
to top
>emb|AL662870.16| Human DNA sequence from clone XXbac-70P20 on chromosome 6 contains the
             DDR1 gene for discoidin domain receptor family, member 1,
             a putative novel transcript and two CpG islands, complete
             sequence
          Length = 61698

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   tgaggtggcgcacggctgta 477
             ||||||||||||||||||||
Sbjct: 28233 tgaggtggcgcacggctgta 28214
to top
>emb|AL662848.6| Human DNA sequence from clone XXbac-111D4 on chromosome 6 contains a
              ribosomal protein L7 (RPL7) pseudogene, the gene for
              KIAA0170 protein, the TUBB gene for tubulin, beta
              polypeptide, the FLOT1 gene for flotillin 1, the IER3 gene
              for immediate early response 3 , two putative novel
              transcripts and three CpG islands, complete sequence
          Length = 185617

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 458    tgaggtggcgcacggctgta 477
              ||||||||||||||||||||
Sbjct: 182990 tgaggtggcgcacggctgta 182971
to top
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 417     tggttcaccgacgaaaagagcacc 440
               ||||||||||||||||||| ||||
Sbjct: 4475599 tggttcaccgacgaaaagatcacc 4475622
to top
>emb|AL121988.10|HSDJ34M23 Human DNA sequence from clone RP1-34M23 on chromosome 1p34.3-36.11
             Contains the 3' end of a variant of a novel gene, the GJB5
             gene for gap junction protein, beta 5 (connexin 31.1), the
             GJB4 gene for gap junction protein, beta 4 (connexin
             30.3), the GJB3 gene for gap junction protein, beta 3,
             31kDa (connexin 31) and the GJA4 gene for gap junction
             protein, alpha 4, 37kDa (connexin 37), complete sequence
          Length = 126876

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   ccgggtctctcgcctcctcg 315
             ||||||||||||||||||||
Sbjct: 93570 ccgggtctctcgcctcctcg 93551
to top
>emb|CR753093.2| Human DNA sequence from clone DADB-32E8 on chromosome 6, complete
             sequence
          Length = 28272

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   tgaggtggcgcacggctgta 477
             ||||||||||||||||||||
Sbjct: 16828 tgaggtggcgcacggctgta 16809
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 102     gccgccaccgatctgcgcat 121
               ||||||||||||||||||||
Sbjct: 4673170 gccgccaccgatctgcgcat 4673151
to top
>gb|AC095050.3| Homo sapiens BAC clone RP11-287F9 from 4, complete sequence
          Length = 220878

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 481    gatgggagatgatagcaaag 500
              ||||||||||||||||||||
Sbjct: 174984 gatgggagatgatagcaaag 174965
to top
>emb|BX927194.9| Human DNA sequence from clone DAMA-342O2 on chromosome 6, complete
             sequence
          Length = 110208

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   tgaggtggcgcacggctgta 477
             ||||||||||||||||||||
Sbjct: 48632 tgaggtggcgcacggctgta 48613
to top
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 458     tgaggtggcgcacggctgta 477
               ||||||||||||||||||||
Sbjct: 1067312 tgaggtggcgcacggctgta 1067331
to top
>gb|AC004169.3|AC004169 Homo sapiens chromosome 4 clone C0236G06 map 4p16, complete sequence
          Length = 189805

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   aaagagcaccgcctcatcgt 450
             ||||||||||||||||||||
Sbjct: 49150 aaagagcaccgcctcatcgt 49169
to top
>gb|AC006167.1|AC006167 Homo sapiens clone UWGC:y67c092 from 6p21, complete sequence
          Length = 42883

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 458  tgaggtggcgcacggctgta 477
            ||||||||||||||||||||
Sbjct: 2082 tgaggtggcgcacggctgta 2101
to top
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29
          Length = 303450

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    ggcgctcggtgccgccaccg 111
             ||||||||||||||||||||
Sbjct: 89351 ggcgctcggtgccgccaccg 89332
to top
>dbj|AB037750.1| Homo sapiens mRNA for KIAA1329 protein, partial cds
          Length = 5287

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 431  aaagagcaccgcctcatcgt 450
            ||||||||||||||||||||
Sbjct: 1842 aaagagcaccgcctcatcgt 1823
to top
>dbj|AB023050.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
             clone:832F2, complete sequence
          Length = 112018

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   tgaggtggcgcacggctgta 477
             ||||||||||||||||||||
Sbjct: 42342 tgaggtggcgcacggctgta 42361


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,270,113
Number of Sequences: 3902068
Number of extensions: 3270113
Number of successful extensions: 55828
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55434
Number of HSP's gapped (non-prelim): 390
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top