ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3c02 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 134 bits (337), Expect = 2e-31 Identities = 63/65 (96%), Positives = 63/65 (96%) Frame = +3 Query: 3 GTRVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLF 182 G VAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLF Sbjct: 54 GGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLF 113 Query: 183 LWAVT 197 LWAVT Sbjct: 114 LWAVT 118
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 108 bits (270), Expect = 1e-23 Identities = 48/62 (77%), Positives = 54/62 (87%) Frame = +3 Query: 12 VAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWA 191 +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVYVGG TGL +WA Sbjct: 57 MALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWA 116 Query: 192 VT 197 VT Sbjct: 117 VT 118
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 108 bits (270), Expect = 1e-23 Identities = 48/62 (77%), Positives = 54/62 (87%) Frame = +3 Query: 12 VAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWA 191 +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVYVGG TGL +WA Sbjct: 57 MALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWA 116 Query: 192 VT 197 VT Sbjct: 117 VT 118
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 107 bits (267), Expect = 3e-23 Identities = 47/62 (75%), Positives = 54/62 (87%) Frame = +3 Query: 12 VAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWA 191 ++ ++GVDASGR KGKGVYQF DKYGANVDGYSPIY ++WSPSGDVYVGG TGL +WA Sbjct: 55 MSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWA 114 Query: 192 VT 197 VT Sbjct: 115 VT 116
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 103 bits (256), Expect = 5e-22 Identities = 45/65 (69%), Positives = 52/65 (80%) Frame = +3 Query: 3 GTRVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLF 182 G + ++GVD+SGR GKGVYQF DKYGANVDGYSPIY EEW+P+GDVY GG TGL Sbjct: 56 GGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLL 115 Query: 183 LWAVT 197 +WAVT Sbjct: 116 IWAVT 120
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 98.2 bits (243), Expect = 2e-20 Identities = 44/59 (74%), Positives = 49/59 (83%) Frame = +3 Query: 21 KEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 197 ++GVDASGR KG GVY+F DKYGANVDGYSPIY +EWS SGDVY GG TGL +WAVT Sbjct: 63 RDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVT 121
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 96.3 bits (238), Expect = 6e-20 Identities = 43/59 (72%), Positives = 48/59 (81%) Frame = +3 Query: 21 KEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 197 ++GVDASGR KG GVY++ DKYGANVDGYSPIY EWS SGDVY GG TGL +WAVT Sbjct: 62 RDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120
>ENDD1_MOUSE (Q8C522) Endonuclease domain-containing 1 protein precursor (EC| 3.1.30.-) Length = 501 Score = 30.0 bits (66), Expect = 5.5 Identities = 9/26 (34%), Positives = 19/26 (73%) Frame = -1 Query: 358 VVIFVSITYVLTVIIRTIIHIVWCIA 281 + +F I Y++T ++R I+H++W +A Sbjct: 341 IKLFQLIYYLVTAVLRNIVHLLWLVA 366
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +3 Query: 27 GVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPS 146 G+ A+GR G F+ ++ G+SP Y+P WSP+ Sbjct: 27 GLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 65
>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)| Length = 312 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Frame = +2 Query: 26 RRRCVWKGS---QGEGCLPVCRQVWSKC*WVQPYIHTRRVVSKWRRLCWRKDGAVS-LGS 193 R R ++GS +GEG P+ VW W Q ++ R + +K KD V LG+ Sbjct: 63 RLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNK-------KDAPVDHLGT 115 Query: 194 DSCWNSA 214 + C++S+ Sbjct: 116 EHCYDSS 122
>ARI5B_HUMAN (Q14865) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (Mrf1-like) (Modulator recognition factor 2) (MRF-2) Length = 1188 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -2 Query: 315 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRR 148 S++L F LG + + R P+ YCR P + ES+ E AP+ R+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESICDEFAPNLKGRPRK 254
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -1 Query: 208 IPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSA 77 +P + A +P T SPL S+G + +TF+P+LSA Sbjct: 1595 VPTTIMAGIVTPFVGTTAFSPLSSKSTGAISSIPKTTFSPFLSA 1638 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,518,007 Number of Sequences: 219361 Number of extensions: 1818851 Number of successful extensions: 4971 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4792 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4967 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
