>POF13_SCHPO (O94334) F-box protein pof13|
          Length = 396

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 445 TLTPVIFGSYLVFRVCLDLVPLAQPAPKQCFTPRCPVNCC 326
           TLT       ++F+  LD +P     P +C   RCP+N C
Sbjct: 223 TLTSNWHSRVILFQNALDALPTTHGNPVECDISRCPLNAC 262

>E41LA_HUMAN (Q9HCS5) Band 4.1-like protein 4A (NBL4 protein)|
          Length = 598

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -1

Query: 205 PSFILVMDRSPRFGSISSDNRPIKTRFRYGSGGFRSLNQATAYESPAHSSTGTRSEITFP 26
           P F     R+P  GS +   +P++ R  + SG    L Q     S  ++S+G+ SE +  
Sbjct: 435 PKFPYTRRRNPSCGSDNDSVQPVRRRKAHNSGEDSDLKQRRRSRSRCNTSSGSESENSNR 494

Query: 25  SH 20
            H
Sbjct: 495 EH 496

>YPAH_PSELE (P52089) UPF0178 protein in pahZ1 5'region|
          Length = 154

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 258 VVVRGEMPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASG 386
           V+ +G +PL PR  W++   + AQQLT    ++   G+G  +G
Sbjct: 82  VLEKGGLPLNPRGEWYTKDTI-AQQLTMRAFMEELRGSGVDTG 123

>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42|
          Length = 723

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 127 FRYGSGGFRSLNQATAYESPAHSSTGTRSEITFPSHXLGAQH 2
           F  G    RS   +     P HS T    ++TF +H LG QH
Sbjct: 490 FPTGPKKVRSSGDSLPSPYPVHSETMIARKVTFSTHSLGNQH 531

>TIM44_YEAST (Q01852) Import inner membrane translocase subunit TIM44,|
           mitochondrial precursor (Mitochondrial protein import
           protein 1) (Inner membrane import site protein 45)
           (ISP45) (Membrane import machinery protein MIM44)
          Length = 431

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 381 SGTKSRQTLNTRYDPKITGVKVGQXXXXXXASSSRGKQPGSP 506
           SGT SR TL  RY  + TG+ V +       + ++G  P SP
Sbjct: 10  SGTSSR-TLTARYRSQYTGLLVARVLFSTSTTRAQGGNPRSP 50

>CN12L_DROME (Q9VTL1) CSN12-like protein|
          Length = 395

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -1

Query: 415 LVFRVCLDLVPLAQPAPKQC--FTP 347
           L++RVCLDL  LAQ   K C  FTP
Sbjct: 108 LMYRVCLDLRYLAQACEKHCQGFTP 132

>TILS_RHIME (Q92JY3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 453

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = -2

Query: 258 LIR*FFNISRFGPLLSFIQASSWSWIDHPGSGP*AVTIALLRLAFATAPVGSVPLTKPLP 79
           ++R F  ++R   + SF+QA   SWID P +   A     +R   AT+  G +P   PL 
Sbjct: 172 VLRPFLGLAR-AEIRSFLQARGVSWIDDPSNANPAFERVRVRARIATS--GGMP--TPLG 226

Query: 78  MSRRLILQQAR 46
             R+     AR
Sbjct: 227 NGRQRAASSAR 237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,642,031
Number of Sequences: 219361
Number of extensions: 1764286
Number of successful extensions: 4276
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4239
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)