Clone Name | basd3c16 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_481458.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3030 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 128 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 182 ||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| |||| Sbjct: 1909 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 1963 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 tggtgcaccacttgttggctc 471 ||||||||||||||||||||| Sbjct: 2232 tggtgcaccacttgttggctc 2252
>gb|AY360391.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0023H09, complete sequence Length = 178320 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 128 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 182 ||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| |||| Sbjct: 20025 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 20079 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 tggtgcaccacttgttggctc 471 ||||||||||||||||||||| Sbjct: 20348 tggtgcaccacttgttggctc 20368
>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12, complete sequence Length = 187972 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 128 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 182 ||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| |||| Sbjct: 56910 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 56856 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 tggtgcaccacttgttggctc 471 ||||||||||||||||||||| Sbjct: 56587 tggtgcaccacttgttggctc 56567
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 128 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 182 ||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| |||| Sbjct: 12719731 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 12719677 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 tggtgcaccacttgttggctc 471 ||||||||||||||||||||| Sbjct: 12719408 tggtgcaccacttgttggctc 12719388
>dbj|AP005166.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0058D03 Length = 184235 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 128 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 182 ||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| |||| Sbjct: 63726 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 63672 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 tggtgcaccacttgttggctc 471 ||||||||||||||||||||| Sbjct: 63403 tggtgcaccacttgttggctc 63383
>dbj|AP005162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0051M20 Length = 152702 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 128 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 182 ||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| |||| Sbjct: 105700 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 105646 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 tggtgcaccacttgttggctc 471 ||||||||||||||||||||| Sbjct: 105377 tggtgcaccacttgttggctc 105357
>dbj|AK105754.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C07, full insert sequence Length = 3365 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 128 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 182 ||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| |||| Sbjct: 1548 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 1602 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 tggtgcaccacttgttggctc 471 ||||||||||||||||||||| Sbjct: 1871 tggtgcaccacttgttggctc 1891
>dbj|AK100410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087H17, full insert sequence Length = 4003 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 128 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 182 ||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| |||| Sbjct: 2257 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 2311 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 tggtgcaccacttgttggctc 471 ||||||||||||||||||||| Sbjct: 2580 tggtgcaccacttgttggctc 2600
>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence Length = 249943 Score = 48.1 bits (24), Expect = 0.036 Identities = 24/24 (100%) Strand = Plus / Minus Query: 130 agaagatgatgaagaaattgtttt 153 |||||||||||||||||||||||| Sbjct: 681 agaagatgatgaagaaattgtttt 658
>ref|NM_117531.2| Arabidopsis thaliana unknown protein AT4G14510 mRNA, complete cds Length = 3015 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 124 cgagggagaagatgatgaagaa 145 |||||||||||||||||||||| Sbjct: 2724 cgagggagaagatgatgaagaa 2745
>emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 1 Length = 206606 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 124 cgagggagaagatgatgaagaa 145 |||||||||||||||||||||| Sbjct: 95568 cgagggagaagatgatgaagaa 95547
>emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39 Length = 197976 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 124 cgagggagaagatgatgaagaa 145 |||||||||||||||||||||| Sbjct: 41064 cgagggagaagatgatgaagaa 41043
>ref|XM_475689.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2067 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 624 gaaatggattccctgagcaga 644 ||||||||||||||||||||| Sbjct: 1995 gaaatggattccctgagcaga 1975
>ref|XM_426462.1| PREDICTED: Gallus gallus similar to adenylate kinase 7 (LOC428907), mRNA Length = 2739 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaagaa 145 ||||||||||||||||||||| Sbjct: 1312 gagggagaagatgatgaagaa 1332
>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11, complete sequence Length = 162772 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 624 gaaatggattccctgagcaga 644 ||||||||||||||||||||| Sbjct: 43578 gaaatggattccctgagcaga 43598
>ref|NM_033523.2| Mus musculus sprouty-related, EVH1 domain containing 2 (Spred2), mRNA Length = 2873 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 agaagatgatgaagaaattgt 150 ||||||||||||||||||||| Sbjct: 1102 agaagatgatgaagaaattgt 1122
>emb|AL672084.10| Mouse DNA sequence from clone RP23-223D13 on chromosome 11 Contains the 3' end of the Spred2 gene for sprouty protein with EVH-1 domain 2, related sequence and a CpG island, complete sequence Length = 122090 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 agaagatgatgaagaaattgt 150 ||||||||||||||||||||| Sbjct: 93649 agaagatgatgaagaaattgt 93669
>gb|BC066013.1| Mus musculus sprouty-related, EVH1 domain containing 2, mRNA (cDNA clone MGC:90041 IMAGE:5706237), complete cds Length = 2940 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 agaagatgatgaagaaattgt 150 ||||||||||||||||||||| Sbjct: 1171 agaagatgatgaagaaattgt 1191
>emb|AL833788.9| Mouse DNA sequence from clone RP23-99E6 on chromosome X, complete sequence Length = 167868 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 agaagatgatgaagaaattgt 150 ||||||||||||||||||||| Sbjct: 43236 agaagatgatgaagaaattgt 43256
>dbj|AK157817.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130063B07 product:sprouty protein with EVH-1 domain 2, related sequence, full insert sequence Length = 4201 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 agaagatgatgaagaaattgt 150 ||||||||||||||||||||| Sbjct: 1104 agaagatgatgaagaaattgt 1124
>dbj|AK036430.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830106O05 product:sprouty protein with EVH-1 domain 2, related sequence, full insert sequence Length = 2873 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 agaagatgatgaagaaattgt 150 ||||||||||||||||||||| Sbjct: 1102 agaagatgatgaagaaattgt 1122
>gb|BC051247.1| Mus musculus sprouty-related, EVH1 domain containing 2, mRNA (cDNA clone IMAGE:3966004) Length = 1808 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 agaagatgatgaagaaattgt 150 ||||||||||||||||||||| Sbjct: 45 agaagatgatgaagaaattgt 65
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 624 gaaatggattccctgagcaga 644 ||||||||||||||||||||| Sbjct: 25100923 gaaatggattccctgagcaga 25100943
>gb|AF435642.1| Oryza sativa CSLC7 mRNA, partial cds Length = 1113 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 624 gaaatggattccctgagcaga 644 ||||||||||||||||||||| Sbjct: 689 gaaatggattccctgagcaga 669
>gb|AC153997.3| Mus musculus 6 BAC RP24-571G22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 150676 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 ctgcatctgcatcagctcctg 302 ||||||||||||||||||||| Sbjct: 39419 ctgcatctgcatcagctcctg 39399
>gb|AC122883.5| Mus musculus BAC clone RP23-83N21 from chromosome 3, complete sequence Length = 230573 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 ctgcatctgcatcagctcctg 302 ||||||||||||||||||||| Sbjct: 188666 ctgcatctgcatcagctcctg 188646
>emb|AL928621.16| Mouse DNA sequence from clone RP23-401G6 on chromosome 2, complete sequence Length = 174248 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 ctgcatctgcatcagctcctg 302 ||||||||||||||||||||| Sbjct: 117183 ctgcatctgcatcagctcctg 117203
>dbj|AB063496.1| Mus musculus mRNA for Spred-2, complete cds Length = 1233 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 agaagatgatgaagaaattgt 150 ||||||||||||||||||||| Sbjct: 612 agaagatgatgaagaaattgt 632
>ref|NM_125492.3| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding AT5G60990 mRNA, complete cds Length = 1731 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gggagaagatgatgaagaaa 146 |||||||||||||||||||| Sbjct: 1451 gggagaagatgatgaagaaa 1470
>gb|U58755.3| Caenorhabditis elegans cosmid C34D4, complete sequence Length = 45313 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 558 attcaaaattgatccttgaa 577 |||||||||||||||||||| Sbjct: 41132 attcaaaattgatccttgaa 41113
>gb|AE006371.1| Lactococcus lactis subsp. lactis IL1403 section 133 of 218 of the complete genome Length = 10314 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gatgatgaagaaattgtttt 153 |||||||||||||||||||| Sbjct: 4776 gatgatgaagaaattgtttt 4757
>gb|AC122457.4| Mus musculus BAC clone RP24-266P11 from chromosome 12, complete sequence Length = 159954 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tgcatctgcatcagctcctg 302 |||||||||||||||||||| Sbjct: 92113 tgcatctgcatcagctcctg 92094
>gb|BC064160.1| Xenopus tropicalis protein kinase C substrate 80K-H, mRNA (cDNA clone MGC:75615 IMAGE:5379306), complete cds Length = 1899 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 948 gagggagaagatgatgaaga 967
>ref|XM_975139.1| PREDICTED: Mus musculus RIKEN cDNA 1110037F02 gene, transcript variant 2 (1110037F02Rik), mRNA Length = 6965 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 824 gagggagaagatgatgaaga 843
>ref|XM_975108.1| PREDICTED: Mus musculus RIKEN cDNA 1110037F02 gene, transcript variant 1 (1110037F02Rik), mRNA Length = 7115 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 824 gagggagaagatgatgaaga 843
>ref|XM_906165.2| PREDICTED: Mus musculus RIKEN cDNA 1110037F02 gene, transcript variant 6 (1110037F02Rik), mRNA Length = 6971 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 824 gagggagaagatgatgaaga 843
>ref|XM_919719.2| PREDICTED: Mus musculus RIKEN cDNA 1110037F02 gene, transcript variant 10 (1110037F02Rik), mRNA Length = 7121 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 824 gagggagaagatgatgaaga 843
>ref|XM_987463.1| PREDICTED: Mus musculus RIKEN cDNA 1110037F02 gene, transcript variant 2 (1110037F02Rik), mRNA Length = 6965 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 824 gagggagaagatgatgaaga 843
>ref|XM_283937.6| PREDICTED: Mus musculus RIKEN cDNA 1110037F02 gene, transcript variant 1 (1110037F02Rik), mRNA Length = 7115 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 824 gagggagaagatgatgaaga 843
>ref|XM_650796.1| Entamoeba histolytica HM-1:IMSS Fe-S cluster assembly protein NifU (21.t00057) partial mRNA Length = 1047 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 agatgatgaagaaattgttt 152 |||||||||||||||||||| Sbjct: 462 agatgatgaagaaattgttt 481
>ref|XM_722887.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07173) partial mRNA Length = 5307 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 agaagatgatgaagaaattg 149 |||||||||||||||||||| Sbjct: 4311 agaagatgatgaagaaattg 4330
>gb|AC112926.7| Mus musculus chromosome 3, clone RP23-215M7, complete sequence Length = 222106 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tgcatctgcatcagctcctg 302 |||||||||||||||||||| Sbjct: 90761 tgcatctgcatcagctcctg 90742
>emb|AL355477.14| Human DNA sequence from clone RP11-113D13 on chromosome 1 Contains the 5' end of the MACF1 gene for microtubule-actin crosslinking factor 1 and two CpG islands, complete sequence Length = 63187 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 tctgcatcagctcctggaaactgt 310 |||||||||||||||| ||||||| Sbjct: 37297 tctgcatcagctcctgtaaactgt 37320
>emb|AL035423.4|HS20I3 Human DNA sequence from clone RP1-20I3 on chromosome Xq25-26 Contains a SNRPN upstream reading frame (SNURF) pseudogene, the SLC25A14 gene for solute carrier family 25 (mitochondrial carrier, brain),member 14 (UCP5, BMCP1), the gene for G-protein coupled receptor 2 (GPCR2), the gene for CGI-79 protein and a CpG island, complete sequence Length = 140094 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 519 tatctgcagcaatggttccacatt 542 ||||||||||||||||||| |||| Sbjct: 114587 tatctgcagcaatggttccgcatt 114564
>emb|BX649246.9| Zebrafish DNA sequence from clone DKEY-123M8 in linkage group 7, complete sequence Length = 175267 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 aataatgttcatttgtctgg 624 |||||||||||||||||||| Sbjct: 105215 aataatgttcatttgtctgg 105196
>emb|Z95396.2|SPAC57A7 S.pombe chromosome I cosmid c57A7 Length = 39101 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 agaagatgatgaagaaattg 149 |||||||||||||||||||| Sbjct: 21270 agaagatgatgaagaaattg 21251
>ref|NM_204025.1| Xenopus tropicalis protein kinase C substrate 80K-H (prkcsh), mRNA Length = 1899 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 948 gagggagaagatgatgaaga 967
>emb|AJ010462.1|ATH010462 Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH10 Length = 1332 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gggagaagatgatgaagaaa 146 |||||||||||||||||||| Sbjct: 1020 gggagaagatgatgaagaaa 1039
>emb|AL928552.7| Mouse DNA sequence from clone RP23-30I12 on chromosome 4, complete sequence Length = 206507 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cacttcccatgtcttctggt 343 |||||||||||||||||||| Sbjct: 51950 cacttcccatgtcttctggt 51931
>gb|AY040613.1| Entamoeba histolytica iron-sulfur cluster NifU-like protein gene, complete cds Length = 2216 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 agatgatgaagaaattgttt 152 |||||||||||||||||||| Sbjct: 1333 agatgatgaagaaattgttt 1352
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome Length = 2694756 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 gggcaagtaatggtgcacca 460 |||||||||||||||||||| Sbjct: 1849067 gggcaagtaatggtgcacca 1849048
>dbj|AK138382.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230086M08 product:unclassifiable, full insert sequence Length = 1803 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tgcatctgcatcagctcctg 302 |||||||||||||||||||| Sbjct: 1346 tgcatctgcatcagctcctg 1365
>gb|AC103923.2| Homo sapiens chromosome 1 clone RP11-230B22, complete sequence Length = 185624 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 537 cacattttggcagcccagat 556 |||||||||||||||||||| Sbjct: 110535 cacattttggcagcccagat 110554
>dbj|AK162531.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530072F24 product:MSTP054 homolog [Homo sapiens], full insert sequence Length = 1314 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 793 gagggagaagatgatgaaga 812
>dbj|AK155623.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730039N04 product:MSTP054 homolog [Homo sapiens], full insert sequence Length = 3715 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 825 gagggagaagatgatgaaga 844
>dbj|AK170075.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630014O15 product:MSTP054 homolog [Homo sapiens], full insert sequence Length = 3957 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 827 gagggagaagatgatgaaga 846
>dbj|AK052499.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430036P16 product:weakly similar to KIAA1429 PROTEIN (FRAGMENT) [Homo sapiens], full insert sequence Length = 2746 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 762 gagggagaagatgatgaaga 781
>ref|NM_001018807.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC57A7.06), partial mRNA Length = 2790 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 agaagatgatgaagaaattg 149 |||||||||||||||||||| Sbjct: 177 agaagatgatgaagaaattg 196
>gb|AF489521.1| Lactococcus bacteriophage 4268, complete genome Length = 36596 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 gatgatgaagaaattgtttt 153 |||||||||||||||||||| Sbjct: 17683 gatgatgaagaaattgtttt 17702
>gb|BC111157.1| Bos taurus cDNA clone MGC:134370 IMAGE:8054193, complete cds Length = 2838 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 1950 gagggagaagatgatgaaga 1969
>dbj|AK076731.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930422M05 product:hypothetical protein, full insert sequence Length = 3924 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 794 gagggagaagatgatgaaga 813
>ref|NM_068724.2| Caenorhabditis elegans C34D4.2 (C34D4.2) mRNA, complete cds Length = 1077 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 558 attcaaaattgatccttgaa 577 |||||||||||||||||||| Sbjct: 1025 attcaaaattgatccttgaa 1006
>dbj|AK034232.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330166A01 product:hypothetical Prenyl group binding site (CAAX box)/RNA-binding region RNP-1 (RNA recognition motif) containing protein, full insert sequence Length = 3854 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 746 gagggagaagatgatgaaga 765
>gb|BC033309.1| Mus musculus RIKEN cDNA 1110037F02 gene, mRNA (cDNA clone MGC:30537 IMAGE:5024976), complete cds Length = 3139 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 794 gagggagaagatgatgaaga 813
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 21696384 gagggagaagatgatgaaga 21696403
>emb|BX832551.1|CNS0A1PS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH7ZF01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1714 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gggagaagatgatgaagaaa 146 |||||||||||||||||||| Sbjct: 1434 gggagaagatgatgaagaaa 1453
>emb|BX830598.1|CNS0A1CN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB92ZF12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1601 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gggagaagatgatgaagaaa 146 |||||||||||||||||||| Sbjct: 1361 gggagaagatgatgaagaaa 1380
>emb|BX833292.1|CNS09YTY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL43ZA09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1648 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gggagaagatgatgaagaaa 146 |||||||||||||||||||| Sbjct: 1409 gggagaagatgatgaagaaa 1428
>gb|AF323669.1|AF323669 Bacteriophage bIL286, complete genome Length = 41834 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 gatgatgaagaaattgtttt 153 |||||||||||||||||||| Sbjct: 21378 gatgatgaagaaattgtttt 21397
>gb|BT005375.1| Arabidopsis thaliana At5g60990 mRNA, complete cds Length = 1371 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gggagaagatgatgaagaaa 146 |||||||||||||||||||| Sbjct: 1260 gggagaagatgatgaagaaa 1279
>gb|AC027683.6| Homo sapiens chromosome 16 clone CTD-2357P14, complete sequence Length = 112945 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 attaaataatgttcatttgt 620 |||||||||||||||||||| Sbjct: 21383 attaaataatgttcatttgt 21402
>gb|AC010889.3|AC010889 Homo sapiens BAC clone RP11-424G14 from Y, complete sequence Length = 180124 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 619 gtctggaaatggattccctgagca 642 |||||| ||||||||||||||||| Sbjct: 66605 gtctggtaatggattccctgagca 66582
>gb|AY081205.1| Entamoeba histolytica NifU mRNA, complete cds Length = 1047 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 agatgatgaagaaattgttt 152 |||||||||||||||||||| Sbjct: 462 agatgatgaagaaattgttt 481
>gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromosome unknown, complete sequence Length = 204271 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 579 aagaaaaactcttaatgatg 598 |||||||||||||||||||| Sbjct: 160249 aagaaaaactcttaatgatg 160230
>gb|AY088068.1| Arabidopsis thaliana clone 40850 mRNA, complete sequence Length = 1716 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gggagaagatgatgaagaaa 146 |||||||||||||||||||| Sbjct: 1438 gggagaagatgatgaagaaa 1457
>ref|XM_232783.3| PREDICTED: Rattus norvegicus similar to mKIAA1429 protein (LOC313061), mRNA Length = 6360 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 1360 gagggagaagatgatgaaga 1379
>gb|AE014133.1| Streptococcus mutans UA159, complete genome Length = 2030921 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aattgttttcaaacctacag 164 |||||||||||||||||||| Sbjct: 867687 aattgttttcaaacctacag 867668
>dbj|AB008269.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3 Length = 61634 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 gggagaagatgatgaagaaa 146 |||||||||||||||||||| Sbjct: 57283 gggagaagatgatgaagaaa 57264
>dbj|AK117799.1| Arabidopsis thaliana At5g60990 mRNA for putative replication protein A1, complete cds, clone: RAFL17-49-D09 Length = 1729 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gggagaagatgatgaagaaa 146 |||||||||||||||||||| Sbjct: 1451 gggagaagatgatgaagaaa 1470
>dbj|AK122509.1| Mus musculus mRNA for mKIAA1429 protein Length = 6409 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 727 gagggagaagatgatgaaga 746
>dbj|AK069200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A08, full insert sequence Length = 2554 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 1251 gagggagaagatgatgaaga 1270
>dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B18, full insert sequence Length = 3861 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 1244 gagggagaagatgatgaaga 1263
>dbj|AK065699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037H04, full insert sequence Length = 2068 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 1251 gagggagaagatgatgaaga 1270
>dbj|AK062564.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F04, full insert sequence Length = 1800 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 479 gagggagaagatgatgaaga 498
>gb|AC006075.1|AC006075 Homo sapiens chromosome 16, BAC clone RPCI-11_192K18 , complete sequence Length = 169765 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 attaaataatgttcatttgt 620 |||||||||||||||||||| Sbjct: 88252 attaaataatgttcatttgt 88271
>ref|NM_001038060.1| Bos taurus similar to CG14120-PA (MGC134370), mRNA Length = 2838 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 1950 gagggagaagatgatgaaga 1969
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 21624729 gagggagaagatgatgaaga 21624748
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 116167 gagggagaagatgatgaaga 116148
>gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complete sequence Length = 191764 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tgcatctgcatcagctcctg 302 |||||||||||||||||||| Sbjct: 43472 tgcatctgcatcagctcctg 43453
>gb|AC173483.1| Mus musculus BAC clone RP23-281C13 from chromosome 12, complete sequence Length = 182922 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tgcatctgcatcagctcctg 302 |||||||||||||||||||| Sbjct: 177383 tgcatctgcatcagctcctg 177364
>emb|AL672276.9| Mouse DNA sequence from clone RP23-124L1 on chromosome 4, complete sequence Length = 208030 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 595 gatgggattaaataatgttcattt 618 |||| ||||||||||||||||||| Sbjct: 100404 gatgcgattaaataatgttcattt 100427
>emb|AL732538.6| Mouse DNA sequence from clone RP23-242O9 on chromosome 4, complete sequence Length = 172802 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gagggagaagatgatgaaga 144 |||||||||||||||||||| Sbjct: 21294 gagggagaagatgatgaaga 21313
>gb|M29296.1|STRGTFD S.mutans glucosyltransferase gene, complete cds Length = 5738 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aattgttttcaaacctacag 164 |||||||||||||||||||| Sbjct: 4058 aattgttttcaaacctacag 4039
>dbj|D88662.1| Streptococcus mutans gene for glucosyltransferase-S, complete cds, clone:pYT201 Length = 5212 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aattgttttcaaacctacag 164 |||||||||||||||||||| Sbjct: 3864 aattgttttcaaacctacag 3845
>dbj|D88659.1| Streptococcus mutans gene for glucosyltransferease-S, complete cds, clone:pYT202 Length = 5217 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aattgttttcaaacctacag 164 |||||||||||||||||||| Sbjct: 3865 aattgttttcaaacctacag 3846
>dbj|D88656.1| Streptococcus mutans gene for glucosyltransferase-S, complete cds, clone:pYT205 Length = 5260 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aattgttttcaaacctacag 164 |||||||||||||||||||| Sbjct: 3865 aattgttttcaaacctacag 3846
>dbj|D88653.1| Streptococcus mutans gene for glucosyltransferase-S, complete cds, clone:pYT104 Length = 5212 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aattgttttcaaacctacag 164 |||||||||||||||||||| Sbjct: 3864 aattgttttcaaacctacag 3845
>dbj|D89979.1| Streptococcus mutans gene for glucosyltransferase-S, complete cds, clone:pTH3 Length = 5212 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aattgttttcaaacctacag 164 |||||||||||||||||||| Sbjct: 3864 aattgttttcaaacctacag 3845 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,232,474 Number of Sequences: 3902068 Number of extensions: 6232474 Number of successful extensions: 157216 Number of sequences better than 10.0: 98 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 156858 Number of HSP's gapped (non-prelim): 358 length of query: 644 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 621 effective length of database: 17,143,297,704 effective search space: 10645987874184 effective search space used: 10645987874184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)