Clone Information

BLAST Search Result

Clone Name	basd3b20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_478627.1\| Oryza sativa (japonica cultivar-group), mRNA	54	2e-04
2	ref\|XM_506400.1\| PREDICTED Oryza sativa (japonica cultivar-group...	54	2e-04
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	54	2e-04
4	dbj\|AP003838.3\| Oryza sativa (japonica cultivar-group) genomic D...	54	2e-04
5	dbj\|AK099127.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	2e-04
6	dbj\|AK069170.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	2e-04
7	dbj\|AK058793.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	2e-04
8	emb\|Z26824.1\|ZMFNRBP Zea mays gene for Ferredoxin-NADP reductase...	48	0.010
9	gb\|AY103825.1\| Zea mays PCO072668 mRNA sequence	48	0.010
10	gb\|M87435.1\|ZEAOE17 Zea mays precursor of the oxygen evolving co...	48	0.010
11	emb\|BX855598.22\| Zebrafish DNA sequence from clone DKEY-52J13 in...	42	0.62
12	gb\|AC021498.12\| Homo sapiens chromosome 8, clone RP11-127H5, com...	42	0.62
13	emb\|BX842696.13\| Zebrafish DNA sequence from clone DKEY-165P1 in...	42	0.62
14	dbj\|AP004711.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	42	0.62
15	emb\|AL161734.12\| Human DNA sequence from clone RP11-33M22 on chr...	40	2.5
16	emb\|X06826.2\|ATVIRB Agrobacterium tumefaciens plasmid pTil5955	40	2.5
17	gb\|AF242881.1\|AF242881 Agrobacterium tumefaciens octopine-type T...	40	2.5
18	gb\|AF223391.1\|AF239258S3 Homo sapiens calcium channel alpha1E su...	40	2.5
19	emb\|CR936257.1\| Natronomonas pharaonis DSM 2160 complete genome	40	2.5
20	gb\|AC153974.9\| Mus musculus 10 BAC RP24-462I5 (Roswell Park Canc...	38	9.7
21	gb\|AC140680.4\| Mus musculus BAC clone RP24-548A12 from chromosom...	38	9.7
22	ref\|XM_954053.1\| Neurospora crassa OR74A hypothetical protein (N...	38	9.7
23	ref\|XM_331593.1\| Neurospora crassa OR74A hypothetical protein (N...	38	9.7
24	gb\|AC141875.4\| Mus musculus BAC clone RP24-316O22 from chromosom...	38	9.7
25	gb\|AC140678.2\| Mus musculus BAC clone RP24-553I16 from chromosom...	38	9.7
26	gb\|AC129192.4\| Mus musculus BAC clone RP24-113B19 from chromosom...	38	9.7
27	gb\|AC122295.4\| Mus musculus BAC clone RP23-263E3 from 13, comple...	38	9.7
28	gb\|AC122924.2\| Mus musculus BAC clone RP23-39M16 from 12, comple...	38	9.7
29	gb\|AC124521.2\| Mus musculus BAC clone RP23-395M9 from 5, complet...	38	9.7
30	gb\|AC110259.17\| Mus musculus chromosome 5, clone RP23-287A8, com...	38	9.7
31	gb\|AC146704.8\| Medicago truncatula clone mth2-107f11, complete s...	38	9.7
32	gb\|AC137971.4\| Mus musculus, clone RP23-135B1, complete sequence	38	9.7
33	gb\|CP000083.1\| Colwellia psychrerythraea 34H, complete genome	38	9.7
34	emb\|BX295539.1\|NCB1D14 Neurospora crassa genomic DNA, BAC contig...	38	9.7
35	emb\|AL096788.1\|SPBC582 S.pombe chromosome II cosmid c582	38	9.7
36	emb\|BX511195.5\| Zebrafish DNA sequence from clone DKEYP-57D12 in...	38	9.7
37	gb\|AC153549.5\| Mus musculus 10 BAC RP23-222O23 (Roswell Park Can...	38	9.7
38	gb\|AC091966.3\| Homo sapiens chromosome 5 clone RP11-489E3, compl...	38	9.7
39	gb\|AC083813.29\| Homo sapiens 12q BAC RP11-304C10 (Roswell Park C...	38	9.7
40	gb\|AC091894.2\| Homo sapiens chromosome 5 clone RP11-138J23, comp...	38	9.7
41	emb\|BX664616.16\| Zebrafish DNA sequence from clone DKEY-231P15 i...	38	9.7
42	gb\|AC147620.5\| Mus musculus BAC clone RP24-285H21 from chromosom...	38	9.7
43	emb\|BX005102.6\| Zebrafish DNA sequence from clone CH211-105H13 i...	38	9.7
44	ref\|NM_001021080.1\| Schizosaccharomyces pombe 972h- hypothetical...	38	9.7
45	gb\|AC016748.3\| Homo sapiens BAC clone RP11-494M7 from 2, complet...	38	9.7
46	gb\|AC022075.29\| Homo sapiens 12 BAC RP11-277P12 (Roswell Park Ca...	38	9.7
47	gb\|AC114493.3\| Homo sapiens chromosome 1 clone RP11-336O20, comp...	38	9.7
48	dbj\|BS000077.1\| Pan troglodytes chromosome 22 clone:RP43-076N07,...	38	9.7
49	gb\|AC005157.1\|AC005157 Homo sapiens PAC clone RP5-1108A12 from 1...	38	9.7
50	dbj\|AP001683.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	38	9.7
51	emb\|CR956631.17\| M.truncatula DNA sequence from clone MTH2-65L9 ...	38	9.7
52	dbj\|AP000872.5\| Homo sapiens genomic DNA, chromosome 11q clone:R...	38	9.7
53	dbj\|AB026678.1\| Gallus gallus Wpkci-8 gene, complete cds	38	9.7
54	gb\|AE000513.1\| Deinococcus radiodurans R1 chromosome 1, complete...	38	9.7
55	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	38	9.7
56	emb\|BX000524.6\| Zebrafish DNA sequence from clone DKEY-10H3, com...	38	9.7
57	gb\|AC148329.3\| Mus musculus BAC clone RP24-176F13 from Y, comple...	38	9.7
58	gb\|AC147029.3\| Mus musculus BAC clone RP23-239P5 from 12, comple...	38	9.7
59	dbj\|AP006372.1\| Lotus japonicus genomic DNA, chromosome 1, clone...	38	9.7
60	dbj\|AB026679.1\| Gallus gallus Wpkci-7 and Wpkci genes, partial cds	38	9.7
61	dbj\|AP000705.2\| Homo sapiens genomic DNA, chromosome 21q21.1-q21...	38	9.7

>ref|XM_478627.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 847

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 51  ggcgatgtcctcgccaagctaggctag 77
           |||||||||||||||||||||||||||
Sbjct: 687 ggcgatgtcctcgccaagctaggctag 713

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>ref|XM_506400.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1582_D10.6 mRNA
          Length = 962

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 51  ggcgatgtcctcgccaagctaggctag 77
           |||||||||||||||||||||||||||
Sbjct: 687 ggcgatgtcctcgccaagctaggctag 713

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                           
Query: 51       ggcgatgtcctcgccaagctaggctag 77
                |||||||||||||||||||||||||||
Sbjct: 21522179 ggcgatgtcctcgccaagctaggctag 21522205

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>dbj|AP003838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1582_D10
          Length = 103475

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                        
Query: 51    ggcgatgtcctcgccaagctaggctag 77
             |||||||||||||||||||||||||||
Sbjct: 59963 ggcgatgtcctcgccaagctaggctag 59989

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>dbj|AK099127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045A04, full
           insert sequence
          Length = 847

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 51  ggcgatgtcctcgccaagctaggctag 77
           |||||||||||||||||||||||||||
Sbjct: 687 ggcgatgtcctcgccaagctaggctag 713

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>dbj|AK069170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004I02, full
           insert sequence
          Length = 962

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 51  ggcgatgtcctcgccaagctaggctag 77
           |||||||||||||||||||||||||||
Sbjct: 687 ggcgatgtcctcgccaagctaggctag 713

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>dbj|AK058793.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G03, full
           insert sequence
          Length = 688

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 51  ggcgatgtcctcgccaagctaggctag 77
           |||||||||||||||||||||||||||
Sbjct: 556 ggcgatgtcctcgccaagctaggctag 582

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>emb|Z26824.1|ZMFNRBP Zea mays gene for Ferredoxin-NADP reductase binding protein
          Length = 1760

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 51   ggcgatgtcctcgccaagctaggctaga 78
            |||||||| |||||||||||||||||||
Sbjct: 1633 ggcgatgttctcgccaagctaggctaga 1660

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>gb|AY103825.1| Zea mays PCO072668 mRNA sequence
          Length = 1009

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 51  ggcgatgtcctcgccaagctaggctaga 78
           |||||||| |||||||||||||||||||
Sbjct: 731 ggcgatgttctcgccaagctaggctaga 758

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>gb|M87435.1|ZEAOE17 Zea mays precursor of the oxygen evolving complex 17 kDa protein
           mRNA, complete cds
          Length = 810

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 51  ggcgatgtcctcgccaagctaggctaga 78
           |||||||| |||||||||||||||||||
Sbjct: 675 ggcgatgttctcgccaagctaggctaga 702

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>emb|BX855598.22| Zebrafish DNA sequence from clone DKEY-52J13 in linkage group 13,
              complete sequence
          Length = 209449

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 114    tttatgttttgttcatatttg 134
              |||||||||||||||||||||
Sbjct: 152169 tttatgttttgttcatatttg 152189

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>gb|AC021498.12| Homo sapiens chromosome 8, clone RP11-127H5, complete sequence
          Length = 160883

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   gccttttatgttttgttcata 130
             |||||||||||||||||||||
Sbjct: 98982 gccttttatgttttgttcata 99002

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>emb|BX842696.13| Zebrafish DNA sequence from clone DKEY-165P1 in linkage group 13,
             complete sequence
          Length = 216185

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 114   tttatgttttgttcatatttg 134
             |||||||||||||||||||||
Sbjct: 32552 tttatgttttgttcatatttg 32572

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>dbj|AP004711.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1568A9, complete
             sequence
          Length = 150485

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   gccttttatgttttgttcata 130
             |||||||||||||||||||||
Sbjct: 92373 gccttttatgttttgttcata 92393

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>emb|AL161734.12| Human DNA sequence from clone RP11-33M22 on chromosome 1q25.2-31.2
             Contains the 3' end of the CACNA1E gene for calcium
             channel voltage-dependent alpha 1E subunit, complete
             sequence
          Length = 167099

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 114   tttatgttttgttcatatttggaa 137
             |||| |||||||||||||||||||
Sbjct: 83857 tttaagttttgttcatatttggaa 83834

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>emb|X06826.2|ATVIRB Agrobacterium tumefaciens plasmid pTil5955
          Length = 42775

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 47    tctcggcgatgtcctcgccaagct 70
             |||||| |||||||||||||||||
Sbjct: 20142 tctcggtgatgtcctcgccaagct 20165

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>gb|AF242881.1|AF242881 Agrobacterium tumefaciens octopine-type Ti plasmid, complete sequence
          Length = 194140

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 47     tctcggcgatgtcctcgccaagct 70
              |||||| |||||||||||||||||
Sbjct: 163611 tctcggtgatgtcctcgccaagct 163634

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>gb|AF223391.1|AF239258S3 Homo sapiens calcium channel alpha1E subunit (CACNA1E) gene, exons 7-49,
              and partial cds, alternatively spliced
          Length = 316704

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 114    tttatgttttgttcatatttggaa 137
              |||| |||||||||||||||||||
Sbjct: 241611 tttaagttttgttcatatttggaa 241588

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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 46      ttctcggcgatgtcctcgcc 65
               ||||||||||||||||||||
Sbjct: 1695182 ttctcggcgatgtcctcgcc 1695163

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>gb|AC153974.9| Mus musculus 10 BAC RP24-462I5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 162977

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 78     atggatccacataatggcc 96
              |||||||||||||||||||
Sbjct: 132321 atggatccacataatggcc 132339

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>gb|AC140680.4| Mus musculus BAC clone RP24-548A12 from chromosome Y, complete sequence
          Length = 222176

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 106    tcaggccttttatgttttg 124
              |||||||||||||||||||
Sbjct: 211488 tcaggccttttatgttttg 211506

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>ref|XM_954053.1| Neurospora crassa OR74A hypothetical protein (NCU09202.1) partial
           mRNA
          Length = 1737

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 44  tgttctcggcgatgtcctc 62
           |||||||||||||||||||
Sbjct: 250 tgttctcggcgatgtcctc 232

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>ref|XM_331593.1| Neurospora crassa OR74A hypothetical protein (NCU09202.1) partial
           mRNA
          Length = 1737

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 44  tgttctcggcgatgtcctc 62
           |||||||||||||||||||
Sbjct: 250 tgttctcggcgatgtcctc 232

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>gb|AC141875.4| Mus musculus BAC clone RP24-316O22 from chromosome Y, complete sequence
          Length = 170988

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 106    tcaggccttttatgttttg 124
              |||||||||||||||||||
Sbjct: 149363 tcaggccttttatgttttg 149381

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>gb|AC140678.2| Mus musculus BAC clone RP24-553I16 from chromosome Y, complete sequence
          Length = 161612

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 106    tcaggccttttatgttttg 124
              |||||||||||||||||||
Sbjct: 123534 tcaggccttttatgttttg 123552

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>gb|AC129192.4| Mus musculus BAC clone RP24-113B19 from chromosome 5, complete sequence
          Length = 170410

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 111    ccttttatgttttgttcatattt 133
              ||||||||||| |||||||||||
Sbjct: 146233 ccttttatgttctgttcatattt 146255

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>gb|AC122295.4| Mus musculus BAC clone RP23-263E3 from 13, complete sequence
          Length = 200289

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 111    ccttttatgttttgttcat 129
              |||||||||||||||||||
Sbjct: 181832 ccttttatgttttgttcat 181814

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>gb|AC122924.2| Mus musculus BAC clone RP23-39M16 from 12, complete sequence
          Length = 228614

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 116   tatgttttgttcatatttg 134
             |||||||||||||||||||
Sbjct: 65792 tatgttttgttcatatttg 65810

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>gb|AC124521.2| Mus musculus BAC clone RP23-395M9 from 5, complete sequence
          Length = 184380

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 111   ccttttatgttttgttcatattt 133
             ||||||||||||| |||||||||
Sbjct: 17812 ccttttatgttttattcatattt 17834

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>gb|AC110259.17| Mus musculus chromosome 5, clone RP23-287A8, complete sequence
          Length = 230585

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 111   ccttttatgttttgttcatattt 133
             ||||||||||||| |||||||||
Sbjct: 36800 ccttttatgttttattcatattt 36778

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>gb|AC146704.8| Medicago truncatula clone mth2-107f11, complete sequence
          Length = 116591

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 111   ccttttatgttttgttcat 129
             |||||||||||||||||||
Sbjct: 73057 ccttttatgttttgttcat 73039

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>gb|AC137971.4| Mus musculus, clone RP23-135B1, complete sequence
          Length = 224801

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 111    ccttttatgttttgttcatattt 133
              ||||||||||| |||||||||||
Sbjct: 176494 ccttttatgttctgttcatattt 176516

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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 146     tgtaacttccctgttgataatat 168
               |||||||| ||||||||||||||
Sbjct: 4063981 tgtaacttgcctgttgataatat 4064003

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>emb|BX295539.1|NCB1D14 Neurospora crassa genomic DNA, BAC contig B1D14
          Length = 138898

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    tgttctcggcgatgtcctc 62
             |||||||||||||||||||
Sbjct: 57808 tgttctcggcgatgtcctc 57790

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>emb|AL096788.1|SPBC582 S.pombe chromosome II cosmid c582
          Length = 27999

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 103  ctttcaggccttttatgtt 121
            |||||||||||||||||||
Sbjct: 8708 ctttcaggccttttatgtt 8690

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>emb|BX511195.5| Zebrafish DNA sequence from clone DKEYP-57D12 in linkage group 17,
             complete sequence
          Length = 79527

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 116   tatgttttgttcatatttg 134
             |||||||||||||||||||
Sbjct: 76688 tatgttttgttcatatttg 76706

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>gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 217249

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 78     atggatccacataatggcc 96
              |||||||||||||||||||
Sbjct: 171625 atggatccacataatggcc 171607

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>gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, complete sequence
          Length = 91296

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 113   ttttatgttttgttcatat 131
             |||||||||||||||||||
Sbjct: 24017 ttttatgttttgttcatat 23999

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>gb|AC083813.29| Homo sapiens 12q BAC RP11-304C10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 216123

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 104    tttcaggccttttatgttt 122
              |||||||||||||||||||
Sbjct: 155067 tttcaggccttttatgttt 155085

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>gb|AC091894.2| Homo sapiens chromosome 5 clone RP11-138J23, complete sequence
          Length = 175552

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 113   ttttatgttttgttcatat 131
             |||||||||||||||||||
Sbjct: 15792 ttttatgttttgttcatat 15810

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>emb|BX664616.16| Zebrafish DNA sequence from clone DKEY-231P15 in linkage group 8,
             complete sequence
          Length = 193090

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 116   tatgttttgttcatatttg 134
             |||||||||||||||||||
Sbjct: 31487 tatgttttgttcatatttg 31469

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>gb|AC147620.5| Mus musculus BAC clone RP24-285H21 from chromosome 13, complete sequence
          Length = 172051

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 111    ccttttatgttttgttcat 129
              |||||||||||||||||||
Sbjct: 129168 ccttttatgttttgttcat 129186

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>emb|BX005102.6| Zebrafish DNA sequence from clone CH211-105H13 in linkage group 8,
              complete sequence
          Length = 154770

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 116    tatgttttgttcatatttg 134
              |||||||||||||||||||
Sbjct: 104190 tatgttttgttcatatttg 104208

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>ref|NM_001021080.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC582.04c),
           partial mRNA
          Length = 1806

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 103 ctttcaggccttttatgtt 121
           |||||||||||||||||||
Sbjct: 579 ctttcaggccttttatgtt 597

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>gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complete sequence
          Length = 182776

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 104   tttcaggccttttatgttt 122
             |||||||||||||||||||
Sbjct: 76794 tttcaggccttttatgttt 76812

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>gb|AC022075.29| Homo sapiens 12 BAC RP11-277P12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 168351

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 105   ttcaggccttttatgtttt 123
             |||||||||||||||||||
Sbjct: 93137 ttcaggccttttatgtttt 93119

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>gb|AC114493.3| Homo sapiens chromosome 1 clone RP11-336O20, complete sequence
          Length = 179221

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 119   gttttgttcatatttggaa 137
             |||||||||||||||||||
Sbjct: 45201 gttttgttcatatttggaa 45183

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>dbj|BS000077.1| Pan troglodytes chromosome 22 clone:RP43-076N07, map 22, complete
             sequences
          Length = 186185

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 163   taatatgtcaacaagcact 181
             |||||||||||||||||||
Sbjct: 75850 taatatgtcaacaagcact 75832

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>gb|AC005157.1|AC005157 Homo sapiens PAC clone RP5-1108A12 from 14q24.3, complete sequence
          Length = 164275

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 98  tgttgctttcaggcctttt 116
           |||||||||||||||||||
Sbjct: 309 tgttgctttcaggcctttt 291

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>dbj|AP001683.1| Homo sapiens genomic DNA, chromosome 21q, section 27/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 163    taatatgtcaacaagcact 181
              |||||||||||||||||||
Sbjct: 293403 taatatgtcaacaagcact 293385

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>emb|CR956631.17| M.truncatula DNA sequence from clone MTH2-65L9 on chromosome 3, complete
              sequence
          Length = 126227

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 112    cttttatgttttgttcata 130
              |||||||||||||||||||
Sbjct: 120381 cttttatgttttgttcata 120363

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>dbj|AP000872.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-727A20, complete
             sequences
          Length = 157330

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 116   tatgttttgttcatatttggaag 138
             ||||| |||||||||||||||||
Sbjct: 98352 tatgtcttgttcatatttggaag 98374

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>dbj|AB026678.1| Gallus gallus Wpkci-8 gene, complete cds
          Length = 5088

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 113  ttttatgttttgttcatat 131
            |||||||||||||||||||
Sbjct: 4057 ttttatgttttgttcatat 4039

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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                         
Query: 8       ccgaggccgagnagtactacggcgag 33
               ||||||||||| ||| ||||||||||
Sbjct: 1436974 ccgaggccgagcagttctacggcgag 1436999

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 47      tctcggcgatgtcctcgcc 65
               |||||||||||||||||||
Sbjct: 3502334 tctcggcgatgtcctcgcc 3502352

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>emb|BX000524.6| Zebrafish DNA sequence from clone DKEY-10H3, complete sequence
          Length = 188685

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 115   ttatgttttgttcatattt 133
             |||||||||||||||||||
Sbjct: 94793 ttatgttttgttcatattt 94775



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 115   ttatgttttgttcatattt 133
             |||||||||||||||||||
Sbjct: 23278 ttatgttttgttcatattt 23260

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>gb|AC148329.3| Mus musculus BAC clone RP24-176F13 from Y, complete sequence
          Length = 149159

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 106   tcaggccttttatgttttg 124
             |||||||||||||||||||
Sbjct: 25171 tcaggccttttatgttttg 25189

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>gb|AC147029.3| Mus musculus BAC clone RP23-239P5 from 12, complete sequence
          Length = 194385

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 116   tatgttttgttcatatttg 134
             |||||||||||||||||||
Sbjct: 92879 tatgttttgttcatatttg 92861

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>dbj|AP006372.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT36C05, TM0215b,
             complete sequence
          Length = 84914

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   aggccttttatgttttgtt 126
             |||||||||||||||||||
Sbjct: 66483 aggccttttatgttttgtt 66465

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>dbj|AB026679.1| Gallus gallus Wpkci-7 and Wpkci genes, partial cds
          Length = 5635

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 113  ttttatgttttgttcatat 131
            |||||||||||||||||||
Sbjct: 2561 ttttatgttttgttcatat 2543

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>dbj|AP000705.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B745D19,
             LL56-APP region, complete sequence
          Length = 145869

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 163   taatatgtcaacaagcact 181
             |||||||||||||||||||
Sbjct: 54877 taatatgtcaacaagcact 54859


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,289,567
Number of Sequences: 3902068
Number of extensions: 1289567
Number of successful extensions: 97902
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97624
Number of HSP's gapped (non-prelim): 278
length of query: 196
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 174
effective length of database: 17,147,199,772
effective search space: 2983612760328
effective search space used: 2983612760328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result