Clone Name
basd3e07
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 gb|AY104121.1| Zea mays PCO141133 mRNA sequence
448
e-123
2 dbj|AK070301.1| Oryza sativa (japonica cultivar-group) cDNA clon...
440
e-120
3 dbj|AK058219.1| Oryza sativa (japonica cultivar-group) cDNA clon...
432
e-118
4 ref|XM_475493.1| Oryza sativa (japonica cultivar-group), predic...
412
e-112
5 gb|AY108531.1| Zea mays PCO112988 mRNA sequence
313
3e-82
6 gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome...
244
3e-61
7 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
244
3e-61
8 gb|AY365040.1| Zea mays translation initiation factor-like gene,...
236
7e-59
9 ref|NM_190883.1| Oryza sativa (japonica cultivar-group), predic...
220
4e-54
10 emb|AJ242801.1|SST242801 Sporobolus stapfianus partial mRNA for ...
198
1e-47
11 gb|BT016285.1| Zea mays clone Contig118 mRNA sequence
196
6e-47
12 gb|AY103847.1| Zea mays PCO105184 mRNA sequence
196
6e-47
13 gb|AF034944.1|AF034944 Zea mays translation initiation factor GO...
188
1e-44
14 emb|AJ249397.1|PPR249397 Phleum pratense mRNA for putative prote...
186
5e-44
15 gb|AF380357.1|AF380357 Porteresia coarctata translational initia...
182
8e-43
16 dbj|AK120697.1| Oryza sativa (japonica cultivar-group) cDNA clon...
182
8e-43
17 dbj|AK105037.1| Oryza sativa (japonica cultivar-group) cDNA clon...
182
8e-43
18 gb|AF094774.1|AF094774 Oryza sativa translation initiation facto...
182
8e-43
19 gb|AF508969.1| Triticum aestivum translation initiation factor m...
172
8e-40
20 ref|XM_478516.1| Oryza sativa (japonica cultivar-group), mRNA
168
1e-38
21 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
163
8e-37
22 dbj|AP003290.2| Oryza sativa (japonica cultivar-group) genomic D...
163
8e-37
23 gb|BT013262.1| Lycopersicon esculentum clone 134804F, mRNA sequence
155
2e-34
24 dbj|AB003378.1| Salix bakko mRNA for SUI1 homolog, complete cds
141
3e-30
25 gb|DQ222518.1| Solanum tuberosum clone 120A06 unknown mRNA
139
1e-29
26 emb|AJ309088.1|PPI309088 Pinus pinaster partial mRNA for putativ...
139
1e-29
27 emb|AJ519839.1|CAR519839 Coffea arabica mRNA for SUI1 protein
123
7e-25
28 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
119
1e-23
29 dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic D...
119
1e-23
30 gb|DQ083224.1| Oryza sativa (indica cultivar-group) clone 5B11F7...
115
2e-22
31 emb|X51910.1|OSGOS2G O.sativa (rice) constitutive GOS2 gene
111
3e-21
32 gb|BT013323.1| Lycopersicon esculentum clone 135043R, mRNA sequence
103
6e-19
33 ref|NM_104307.3| Arabidopsis thaliana translation initiation fac...
101
2e-18
34 gb|BT000649.1| Arabidopsis thaliana putative protein translation...
101
2e-18
35 gb|AF372910.1|AF372910 Arabidopsis thaliana At1g54290/F20D21_53 ...
101
2e-18
36 emb|BX817291.1|CNS0ACKO Arabidopsis thaliana Full-length cDNA Co...
101
2e-18
37 ref|NM_124857.2| Arabidopsis thaliana translation initiation fac...
98
4e-17
38 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
98
4e-17
39 dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic D...
98
4e-17
40 gb|BT005836.1| Arabidopsis thaliana At5g54760 gene, complete cds
94
6e-16
41 ref|NM_118847.2| Arabidopsis thaliana translation initiation fac...
90
9e-15
42 gb|AY060537.1| Arabidopsis thaliana AT4g27130/T24A18_80 mRNA, co...
90
9e-15
43 gb|AY037234.1| Arabidopsis thaliana AT4g27130/T24A18_80 mRNA, co...
90
9e-15
44 emb|BX828314.1|CNS0A3U9 Arabidopsis thaliana Full-length cDNA Co...
90
9e-15
45 gb|AY088288.1| Arabidopsis thaliana clone 5206 mRNA, complete se...
90
9e-15
46 emb|BX828730.1|CNS0A3GG Arabidopsis thaliana Full-length cDNA Co...
86
1e-13
47 gb|L41693.1|PS300016E Eucalyptus globulus bicostata symbiont (F0...
80
9e-12
48 emb|AJ519840.1|CAR519840 Coffea arabica sui1 gene, exons 1-5
78
4e-11
49 gb|DQ083225.1| Oryza sativa (indica cultivar-group) clone 5B11G7...
72
2e-09
50 gb|AF098672.1|AF098672 Brassica oleracea translation initiation ...
72
2e-09
51 gb|DQ083223.1| Oryza sativa (indica cultivar-group) clone 5B12A6...
68
3e-08
52 gb|AC005287.4| Arabidopsis thaliana chromosome I BAC F20D21 geno...
66
1e-07
53 gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete se...
60
8e-06
54 gb|AF521961.1| Helianthus annuus translation initiation factor B...
60
8e-06
55 gb|AC123708.17| Mus musculus chromosome 9, clone RP23-366E1, com...
58
3e-05
56 gb|AY550043.1| Sus scrofa translation factor sui1-like protein m...
58
3e-05
57 gb|BC033505.1| Mus musculus eukaryotic translation initiation fa...
58
3e-05
58 gb|BC030319.1| Mus musculus eukaryotic translation initiation fa...
58
3e-05
59 ref|NM_026892.1| Mus musculus eukaryotic translation initiation ...
58
3e-05
60 dbj|AK013965.1| Mus musculus 13 days embryo head cDNA, RIKEN ful...
58
3e-05
61 gb|BC109541.1| Bos taurus cDNA clone MGC:133836 IMAGE:8057925, c...
58
3e-05
62 dbj|AK005192.1| Mus musculus adult male cerebellum cDNA, RIKEN f...
58
3e-05
63 gb|AF267716.1|AF267716 Sus scrofa translation factor sui1-like p...
58
3e-05
64 ref|NM_001001635.1| Sus scrofa translation factor sui1-like prot...
58
3e-05
65 gb|AY610489.1| Sus scrofa clone rssp04_e14.y1.abd, mRNA sequence
58
3e-05
66 ref|NM_001037598.1| Bos taurus similar to translation factor sui...
58
3e-05
67 ref|NM_180861.1| Arabidopsis thaliana translation initiation fac...
56
1e-04
68 ref|NM_124876.3| Arabidopsis thaliana translation initiation fac...
56
1e-04
69 gb|AY133677.1| Arabidopsis thaliana AT5g54940/MBG8_21 mRNA, comp...
56
1e-04
70 gb|AF385736.1|AF385736 Arabidopsis thaliana AT5g54940/MBG8_21 mR...
56
1e-04
71 emb|BX833097.1|CNS0A21C Arabidopsis thaliana Full-length cDNA Co...
56
1e-04
72 emb|BX831257.1|CNS0A0P2 Arabidopsis thaliana Full-length cDNA Co...
56
1e-04
73 gb|AY087132.1| Arabidopsis thaliana clone 32071 mRNA, complete s...
56
1e-04
74 dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...
56
1e-04
75 gb|AF091857.1|AF091857 Pimpinella brachycarpa protein translatio...
56
1e-04
76 gb|AY617076.1| Bassia scoparia putative translation initiation f...
54
5e-04
77 gb|BC088954.1| Xenopus laevis cDNA clone MGC:85057 IMAGE:6327089...
50
0.008
78 gb|DQ215825.1| Taeniopygia guttata clone 0065P0009C06 eukaryotic...
50
0.008
79 gb|DQ215824.1| Taeniopygia guttata clone 0061P0020D08 eukaryotic...
50
0.008
80 gb|DQ215823.1| Taeniopygia guttata clone 0058P0020F02 eukaryotic...
50
0.008
81 gb|DQ215822.1| Taeniopygia guttata clone 0058P0015F08 eukaryotic...
50
0.008
82 gb|DQ215821.1| Taeniopygia guttata clone 0058P0003H09 eukaryotic...
50
0.008
83 gb|DQ215820.1| Taeniopygia guttata clone 0063P0027C07 eukaryotic...
50
0.008
84 gb|DQ215819.1| Taeniopygia guttata clone 0065P0015F12 eukaryotic...
50
0.008
85 gb|DQ215818.1| Taeniopygia guttata clone 0058P0009H05 eukaryotic...
50
0.008
86 gb|DQ215817.1| Taeniopygia guttata clone 0058P0003G09 eukaryotic...
50
0.008
87 gb|DQ215816.1| Taeniopygia guttata clone 0058P0060A05 eukaryotic...
50
0.008
88 gb|DQ215815.1| Taeniopygia guttata clone 0061P0014G02 eukaryotic...
50
0.008
89 ref|XM_516381.1| PREDICTED: Pan troglodytes similar to translati...
50
0.008
90 gb|BC059790.1| Xenopus laevis hypothetical protein MGC68655, mRN...
50
0.008
91 ref|NM_005875.2| Homo sapiens eukaryotic translation initiation ...
50
0.008
92 gb|BC006996.1| Homo sapiens eukaryotic translation initiation fa...
50
0.008
93 gb|AC104186.2| Homo sapiens chromosome 3 clone RP11-391M1, compl...
50
0.008
94 emb|CR610118.1| full-length cDNA clone CS0DI083YG09 of Placenta ...
50
0.008
95 emb|CR601510.1| full-length cDNA clone CS0DI009YF18 of Placenta ...
50
0.008
96 emb|CR600400.1| full-length cDNA clone CS0DN002YE04 of Adult bra...
50
0.008
97 emb|CR542223.1| Homo sapiens full open reading frame cDNA clone ...
50
0.008
98 dbj|AB169765.1| Macaca fascicularis brain cDNA, clone: QtrA-1174...
50
0.008
99 dbj|AK223448.1| Homo sapiens mRNA for translation factor sui1 ho...
50
0.008
100 ref|XM_217294.3| PREDICTED: Rattus norvegicus similar to transla...
50
0.008
101 gb|AF263452.1|AF263452 Homo sapiens translational factor eIF-1 m...
50
0.008
102 gb|AF077052.1| Homo sapiens protein translation factor sui1 homo...
50
0.008
103 gb|AY894036.1| Synthetic construct Homo sapiens clone FLH131152....
50
0.008
104 gb|M96818.1|EUPTBPA Euplotes crassus macronuclear 51 kDa telomer...
48
0.032
105 gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome...
46
0.13
106 ref|XM_421398.1| PREDICTED: Gallus gallus similar to mKIAA0284 p...
44
0.50
107 gb|BT009033.1| Triticum aestivum clone wdk4c.pk005.f24:fis, full...
44
0.50
108 dbj|AP005104.3| Oryza sativa (japonica cultivar-group) genomic D...
44
0.50
109 dbj|AK101048.1| Oryza sativa (japonica cultivar-group) cDNA clon...
44
0.50
110 ref|XM_640867.1| Dictyostelium discoideum hypothetical protein (...
42
2.0
111 gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome...
42
2.0
112 ref|XM_418159.1| PREDICTED: Gallus gallus similar to Eukaryotic ...
42
2.0
113 ref|XM_534229.2| PREDICTED: Canis familiaris similar to translat...
42
2.0
114 gb|DQ363457.1| Ictalurus punctatus clone C139CH01 translation fa...
42
2.0
115 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
42
2.0
116 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
42
2.0
117 gb|AF064607.1|AF064607 Homo sapiens GC20 protein mRNA, complete cds
42
2.0
118 gb|U25125.1|GGU25125 Gallus gallus preprogastrin gene, complete cds
42
2.0
119 gb|AC005361.1| Homo sapiens chromosome 16, cosmid clone 352F10 (...
40
7.8
120 ref|XM_420777.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ...
40
7.8
121 gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
40
7.8
122 gb|AY391839.1| Pseudomonas savastanoi pv. glycinea plasmid p4180...
40
7.8
123 gb|AC136148.2| Oryza sativa (japonica cultivar-group) chromosome...
40
7.8
124 emb|AL049594.4|HSDJ860P4 Human DNA sequence from clone RP5-860P4...
40
7.8
125 gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
40
7.8
126 emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, ...
40
7.8
127 emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, B...
40
7.8
128 gb|AC015844.12| Homo sapiens chromosome 17, clone RP11-283E7, co...
40
7.8
129 gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
40
7.8
130 emb|CR407335.1| Gallus gallus finished cDNA, clone ChEST108a2
40
7.8
131 gb|AC093101.1| Drosophila melanogaster, chromosome 2L, region 35...
40
7.8
132 gb|AF544214.1| Pseudomonas syringae pv. actinidiae CmaT (cmaT) a...
40
7.8
133 gb|DQ163916.1| Bacteriophage M6, complete genome
40
7.8
134 gb|BC041506.1| Xenopus laevis suppressor of initiator codon muta...
40
7.8
135 gb|AE003646.3| Drosophila melanogaster chromosome 2L, section 55...
40
7.8
136 dbj|AP002500.4| Homo sapiens genomic DNA, chromosome 11q clone:C...
40
7.8
137 gb|AC005922.1|AC005922 Homo sapiens chromosome 17, clone hRPK.23...
40
7.8
138 dbj|AK114444.1| Ciona intestinalis cDNA, clone:cieg002h13, full ...
40
7.8
139 gb|U14657.1|PSU14657 Pseudomonas syringae amino acid-adenylating...
40
7.8
140 gb|U78042.1|BTU78042 Bos taurus hormone sensitive lipase (bHSL) ...
40
7.8
>gb| AY104121.1 | Zea mays PCO141133 mRNA sequence
Length = 815
Score = 448 bits (226), Expect = e-123
Identities = 334/370 (90%)
Strand = Plus / Plus
Query: 114 aaacctcaacaaccaagtttcatgtctgatctcgacgttacgcttccatctgccttcgat 173
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 145 aaacctcaacaaccaagtttcatgtctgatctcgacgtccagcttccatctgcctttgat 204
Query: 174 ccttttgctgaggcaaatgctgaggatgctggtgcaggccccggcgcaaaagattatgtg 233
|| ||||||||||||||||||||||| ||||||| || || || | || |||||||||
Sbjct: 205 ccgtttgctgaggcaaatgctgaggactctggtgctggtcctggaacgaaggattatgtg 264
Query: 234 catgtgcgcatccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaag 293
||||||||||||||||||||||||||||| |||||||||||||| || ||||| || |||
Sbjct: 265 catgtgcgcatccagcagcgcaacggcagaaagagtctgactacagtccagggtctgaag 324
Query: 294 aaagagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggc 353
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 aaagagttcagctataacaagatcctcaaggatctgaagaaggaattctgctgcaatggt 384
Query: 354 acagtagtccaggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaag 413
|| ||||| ||||| || ||||||||||||||||||||||| || ||||| ||||| |||
Sbjct: 385 actgtagttcaggacccagagctaggccaggtcattcagctccaaggtgaccagcgcaag 444
Query: 414 aatgttgctactttcctagtccaggctgggattgcgaagaaggagctcatcaagatccac 473
|||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| |||
Sbjct: 445 aatgttgctactttcctagttcaggctgggattgcgaagaaagagaacatcaagattcac 504
Query: 474 ggcttctaag 483
|| |||||||
Sbjct: 505 gggttctaag 514
>dbj| AK070301.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023049M22, full
insert sequence
Length = 1410
Score = 440 bits (222), Expect = e-120
Identities = 371/420 (88%), Gaps = 3/420 (0%)
Strand = Plus / Plus
Query: 65 ttccacataaagaagaacaagagaaaccttgatctgttgggtgccagtcaaacctcaaca 124
||||||||||||| ||| || ||| |||||||||| ||||||| ||| ||||||
Sbjct: 771 ttccacataaagaccaacgagtaaaagcttgatctgtccggtgccaaccaa---tcaaca 827
Query: 125 accaagtttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctga 184
| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 828 aacaagtttcatgtctgatctcgacgttcagcttccatctgccttcgatccgtttgctga 887
Query: 185 ggcaaatgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcat 244
||||||||||||||| | || || ||||| || ||||| ||||||||||||||||||||
Sbjct: 888 ggcaaatgctgaggactccggcgctggccctggagcaaaggattatgtgcatgtgcgcat 947
Query: 245 ccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcag 304
|||||||||||||||||| |||||||| ||||||||||||||| ||||||| |||| |||
Sbjct: 948 ccagcagcgcaacggcagaaagagtctaactactgttcagggcttaaagaaggagtacag 1007
Query: 305 ctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtcca 364
||||||||||||||||||||||| || ||||| |||||||||||||| || ||||||||
Sbjct: 1008 ttacaacaagatcctcaaggatctgaaaaaggagttctgctgcaatggtactgtagtcca 1067
Query: 365 ggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgctac 424
||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 1068 agatccagagcttggccaggtcattcagcttcaaggtgatcagcgtaagaatgttgccac 1127
Query: 425 tttcctagtccaggctgggattgcgaagaaggagctcatcaagatccacggcttctaagc 484
|||||||| |||||||||||||| |||||||| ||||||||| ||||| ||||||||
Sbjct: 1128 gttcctagttcaggctgggattgctaagaaggacaacatcaagattcacggtttctaagc 1187
>dbj| AK058219.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F05, full
insert sequence
Length = 731
Score = 432 bits (218), Expect = e-118
Identities = 370/420 (88%), Gaps = 3/420 (0%)
Strand = Plus / Plus
Query: 65 ttccacataaagaagaacaagagaaaccttgatctgttgggtgccagtcaaacctcaaca 124
||||||||||||| ||| || ||| |||||||||| ||||||| ||| ||||||
Sbjct: 92 ttccacataaagaccaacgagtaaaagcttgatctgtccggtgccaaccaa---tcaaca 148
Query: 125 accaagtttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctga 184
| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 149 aacaagtttcatgtctgatctcgacgttcagcttccatctgccttcgatccgtttgctga 208
Query: 185 ggcaaatgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcat 244
||||||||||||||| | || || ||||| || ||||| ||||||||||||||| ||||
Sbjct: 209 ggcaaatgctgaggactccggcgctggccctggagcaaaggattatgtgcatgtgtgcat 268
Query: 245 ccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcag 304
|||||||||||||||||| |||||||| ||||||||||||||| ||||||| |||| |||
Sbjct: 269 ccagcagcgcaacggcagaaagagtctaactactgttcagggcttaaagaaggagtacag 328
Query: 305 ctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtcca 364
||||||||||||||||||||||| || ||||| |||||||||||||| || ||||||||
Sbjct: 329 ttacaacaagatcctcaaggatctgaaaaaggagttctgctgcaatggtactgtagtcca 388
Query: 365 ggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgctac 424
||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 389 agatccagagcttggccaggtcattcagcttcaaggtgatcagcgtaagaatgttgccac 448
Query: 425 tttcctagtccaggctgggattgcgaagaaggagctcatcaagatccacggcttctaagc 484
|||||||| |||||||||||||| |||||||| ||||||||| ||||| ||||||||
Sbjct: 449 gttcctagttcaggctgggattgctaagaaggacaacatcaagattcacggtttctaagc 508
>ref| XM_475493.1 | Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 348
Score = 412 bits (208), Expect = e-112
Identities = 313/348 (89%)
Strand = Plus / Plus
Query: 135 atgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggcaaatgct 194
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 atgtctgatctcgacgttcagcttccatctgccttcgatccgtttgctgaggcaaatgct 60
Query: 195 gaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcatccagcagcgc 254
||||| | || || ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 61 gaggactccggcgctggccctggagcaaaggattatgtgcatgtgcgcatccagcagcgc 120
Query: 255 aacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagctacaacaag 314
|||||||| |||||||| ||||||||||||||| ||||||| |||| ||| |||||||||
Sbjct: 121 aacggcagaaagagtctaactactgttcagggcttaaagaaggagtacagttacaacaag 180
Query: 315 atcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtccaggatcccgag 374
|||||||||||||| || ||||| |||||||||||||| || |||||||| ||||| |||
Sbjct: 181 atcctcaaggatctgaaaaaggagttctgctgcaatggtactgtagtccaagatccagag 240
Query: 375 ctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcctagtc 434
|| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 241 cttggccaggtcattcagcttcaaggtgatcagcgtaagaatgttgccacgttcctagtt 300
Query: 435 caggctgggattgcgaagaaggagctcatcaagatccacggcttctaa 482
|||||||||||||| |||||||| ||||||||| ||||| ||||||
Sbjct: 301 caggctgggattgctaagaaggacaacatcaagattcacggtttctaa 348
>gb| AY108531.1 | Zea mays PCO112988 mRNA sequence
Length = 792
Score = 313 bits (158), Expect = 3e-82
Identities = 281/322 (87%)
Strand = Plus / Plus
Query: 118 ctcaacaaccaagtttcatgtctgatctcgacgttacgcttccatctgccttcgatcctt 177
||||| ||| |||||||||||||||||||||||| |||||||||||| || ||||| |
Sbjct: 156 ctcaagaactaagtttcatgtctgatctcgacgtccagcttccatctgcttttgatccgt 215
Query: 178 ttgctgaggcaaatgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatg 237
|||| ||||||||||||||||| | |||| || | || |||| || |||||||| |
Sbjct: 216 ttgcagaggcaaatgctgaggactccagtgctggtgctggatcaaaggactatgtgcacg 275
Query: 238 tgcgcatccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaag 297
|||| || |||||||||||||| |||||||||||||| |||||||||||| | |||||||
Sbjct: 276 tgcgtattcagcagcgcaacggaaggaagagtctgacaactgttcagggcttgaagaaag 335
Query: 298 agttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacag 357
||| |||||||||||||||||||||||||||||| || || |||||||||||||| || |
Sbjct: 336 agtacagctacaacaagatcctcaaggatctcaaaaaagagttctgctgcaatggtactg 395
Query: 358 tagtccaggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatg 417
||||||||||||| |||||||||||||||||||| || || |||||||||||||| ||||
Sbjct: 396 tagtccaggatccagagctaggccaggtcattcaactgcaaggtgatcagcgtaaaaatg 455
Query: 418 ttgctactttcctagtccaggc 439
| |||||||| |||||||||||
Sbjct: 456 tcgctacttttctagtccaggc 477
>gb| AC130605.3 | Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010D04,
complete sequence
Length = 122599
Score = 244 bits (123), Expect = 3e-61
Identities = 192/215 (89%)
Strand = Plus / Plus
Query: 171 gatccttttgctgaggcaaatgctgaggatgctggtgcaggccccggcgcaaaagattat 230
||||| ||||||||||||||||||||||| | || || ||||| || ||||| ||||||
Sbjct: 79741 gatccgtttgctgaggcaaatgctgaggactccggcgctggccctggagcaaaggattat 79800
Query: 231 gtgcatgtgcgcatccagcagcgcaacggcaggaagagtctgactactgttcagggccta 290
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 79801 gtgcatgtgcgcatccagcagcgcaacggcagaaagagtctaactactgttcagggctta 79860
Query: 291 aagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaat 350
||||| |||| ||| ||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 79861 aagaaggagtacagttacaacaagatcctcaaggatctgaaaaaggagttctgctgcaat 79920
Query: 351 ggcacagtagtccaggatcccgagctaggccaggt 385
|| || |||||||| ||||| ||||| ||||||||
Sbjct: 79921 ggtactgtagtccaagatccagagcttggccaggt 79955
Score = 83.8 bits (42), Expect = 6e-13
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 381 caggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcctagtccagg 438
||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||
Sbjct: 80030 caggtcattcagcttcaaggtgatcagcgtaagaatgttgccacgttcctagttcagg 80087
Score = 81.8 bits (41), Expect = 2e-12
Identities = 91/107 (85%), Gaps = 3/107 (2%)
Strand = Plus / Plus
Query: 65 ttccacataaagaagaacaagagaaaccttgatctgttgggtgccagtcaaacctcaaca 124
||||||||||||| ||| || ||| |||||||||| ||||||| ||| ||||||
Sbjct: 79314 ttccacataaagaccaacgagtaaaagcttgatctgtccggtgccaaccaa---tcaaca 79370
Query: 125 accaagtttcatgtctgatctcgacgttacgcttccatctgccttcg 171
| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 79371 aacaagtttcatgtctgatctcgacgttcagcttccatctgccttcg 79417
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 436 aggctgggattgcgaagaaggagctcatcaagatccacggcttctaagc 484
||||||||||||| |||||||| ||||||||| ||||| ||||||||
Sbjct: 80188 aggctgggattgctaagaaggacaacatcaagattcacggtttctaagc 80236
>dbj| AP008211.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 244 bits (123), Expect = 3e-61
Identities = 192/215 (89%)
Strand = Plus / Plus
Query: 171 gatccttttgctgaggcaaatgctgaggatgctggtgcaggccccggcgcaaaagattat 230
||||| ||||||||||||||||||||||| | || || ||||| || ||||| ||||||
Sbjct: 24393951 gatccgtttgctgaggcaaatgctgaggactccggcgctggccctggagcaaaggattat 24394010
Query: 231 gtgcatgtgcgcatccagcagcgcaacggcaggaagagtctgactactgttcagggccta 290
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 24394011 gtgcatgtgcgcatccagcagcgcaacggcagaaagagtctaactactgttcagggctta 24394070
Query: 291 aagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaat 350
||||| |||| ||| ||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 24394071 aagaaggagtacagttacaacaagatcctcaaggatctgaaaaaggagttctgctgcaat 24394130
Query: 351 ggcacagtagtccaggatcccgagctaggccaggt 385
|| || |||||||| ||||| ||||| ||||||||
Sbjct: 24394131 ggtactgtagtccaagatccagagcttggccaggt 24394165
Score = 83.8 bits (42), Expect = 6e-13
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 381 caggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcctagtccagg 438
||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||
Sbjct: 24394240 caggtcattcagcttcaaggtgatcagcgtaagaatgttgccacgttcctagttcagg 24394297
Score = 81.8 bits (41), Expect = 2e-12
Identities = 91/107 (85%), Gaps = 3/107 (2%)
Strand = Plus / Plus
Query: 65 ttccacataaagaagaacaagagaaaccttgatctgttgggtgccagtcaaacctcaaca 124
||||||||||||| ||| || ||| |||||||||| ||||||| ||| ||||||
Sbjct: 24393524 ttccacataaagaccaacgagtaaaagcttgatctgtccggtgccaaccaa---tcaaca 24393580
Query: 125 accaagtttcatgtctgatctcgacgttacgcttccatctgccttcg 171
| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 24393581 aacaagtttcatgtctgatctcgacgttcagcttccatctgccttcg 24393627
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 436 aggctgggattgcgaagaaggagctcatcaagatccacggcttctaagc 484
||||||||||||| |||||||| ||||||||| ||||| ||||||||
Sbjct: 24394398 aggctgggattgctaagaaggacaacatcaagattcacggtttctaagc 24394446
Score = 46.1 bits (23), Expect = 0.13
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 382 aggtcattcagcttcagggtgatcagcgtaagaatgttg 420
|||||||||||||| | || |||||| ||||||||||||
Sbjct: 6164270 aggtcattcagctttaaggcgatcagtgtaagaatgttg 6164308
Score = 46.1 bits (23), Expect = 0.13
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 224 agattatgtgcatgtgcgcatccagca 250
|||||||||||||||| ||||||||||
Sbjct: 6164051 agattatgtgcatgtgtgcatccagca 6164077
>gb| AY365040.1 | Zea mays translation initiation factor-like gene, partial sequence
Length = 656
Score = 236 bits (119), Expect = 7e-59
Identities = 191/215 (88%)
Strand = Plus / Plus
Query: 171 gatccttttgctgaggcaaatgctgaggatgctggtgcaggccccggcgcaaaagattat 230
||||| |||||||||||||||||||||| ||||||| || || || | || ||||||
Sbjct: 337 gatccgtttgctgaggcaaatgctgagggctctggtgctggtcctggaacgaaggattat 396
Query: 231 gtgcatgtgcgcatccagcagcgcaacggcaggaagagtctgactactgttcagggccta 290
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||
Sbjct: 397 gtgcatgtgcgcatccagcagcgcaacggcagaaagagtctgactacagtccagggtctg 456
Query: 291 aagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaat 350
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 457 aagaaggagttcagctataacaagatcctcaaggatctgaagaaggaattctgctgcaat 516
Query: 351 ggcacagtagtccaggatcccgagctaggccaggt 385
|| || ||||| ||||| || ||||||||||||||
Sbjct: 517 ggtactgtagttcaggacccagagctaggccaggt 551
Score = 65.9 bits (33), Expect = 1e-07
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 113 caaacctcaacaaccaagtttcatgtctgatctcgacgttacgcttccatctgcctt 169
||||||||| |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 91 caaacctcaccaaccaagtttcatgtct-atctcgacgtccagcttccatctgcctt 146
>ref| NM_190883.1 | Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 360
Score = 220 bits (111), Expect = 4e-54
Identities = 186/211 (88%)
Strand = Plus / Plus
Query: 228 tatgtgcatgtgcgcatccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||| || |||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct: 94 tatgtacacgtgcgcattcagcagcgcaacggaagaaagagtctgactactgttcagggc 153
Query: 288 ctaaagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgc 347
| |||||||||| ||| |||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 154 ttgaagaaagagtacagttacaacaaaatcctcaaggatctgaaaaaggaattctgttgt 213
Query: 348 aatggcacagtagtccaggatcccgagctaggccaggtcattcagcttcagggtgatcag 407
||||| || |||||||| ||||| ||| |||||||||||||||| ||||| |||||||||
Sbjct: 214 aatggtactgtagtccaagatccagagttaggccaggtcattcaacttcaaggtgatcag 273
Query: 408 cgtaagaatgttgctactttcctagtccagg 438
||||| |||||||| || |||||||| ||||
Sbjct: 274 cgtaaaaatgttgcgacgttcctagttcagg 304
Score = 50.1 bits (25), Expect = 0.008
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 135 atgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggcaaatgct 194
||||||||||||||||| ||||||||| || || ||||| ||||| || || ||||||
Sbjct: 1 atgtctgatctcgacgtccagcttccatcagcttttgatccgtttgcggaagccaatgct 60
Query: 195 gagga 199
|||||
Sbjct: 61 gagga 65
>emb| AJ242801.1 |SST242801 Sporobolus stapfianus partial mRNA for putative translation
initiation factor eIF-1
Length = 796
Score = 198 bits (100), Expect = 1e-47
Identities = 277/336 (82%)
Strand = Plus / Plus
Query: 131 tttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggcaaa 190
||||||||||||||| ||| || | | ||| ||||||||||||| ||| ||||||| ||
Sbjct: 164 tttcatgtctgatcttgacattcagatcccaactgccttcgatcccttttctgaggccaa 223
Query: 191 tgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcatccagca 250
||||| ||| ||||||| | | || |||| || || || |||||||||||||||||
Sbjct: 224 tgctggggactctggtgcggctgcaggatcaaaggactacgttcatgtgcgcatccagca 283
Query: 251 gcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagctacaa 310
||| || || | ||||||||||| ||||||||||| | ||||| || |||||||||||
Sbjct: 284 gcgtaatggtcgcaagagtctgacgactgttcagggtttgaagaaggaattcagctacaa 343
Query: 311 caagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtccaggatcc 370
||||||||| || || ||||||||||| |||||||||||||| ||||| |||||||| ||
Sbjct: 344 caagatcctgaaagacctcaagaaggagttctgctgcaatggtacagttgtccaggaccc 403
Query: 371 cgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcct 430
||||| || ||||||||||| ||||||||||||||| | ||||| || | | ||||||
Sbjct: 404 agagcttggacaggtcattcaacttcagggtgatcagaggaagaacgtctcaaatttcct 463
Query: 431 agtccaggctgggattgcgaagaaggagctcatcaa 466
|||||||| || |||| ||| ||||||| ||||||
Sbjct: 464 tgtccaggccggcattgtgaaaaaggagcacatcaa 499
>gb| BT016285.1 | Zea mays clone Contig118 mRNA sequence
Length = 861
Score = 196 bits (99), Expect = 6e-47
Identities = 279/339 (82%)
Strand = Plus / Plus
Query: 131 tttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggcaaa 190
||||||||||||||||||| || | | ||| ||||||||||||| || |||||||| ||
Sbjct: 242 tttcatgtctgatctcgacattcagatcccaactgccttcgatcccttcgctgaggccaa 301
Query: 191 tgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcatccagca 250
||||| ||| ||||||| | | || |||| || || || || ||||||||||||||
Sbjct: 302 tgctggggactctggtgcggcagcagggtcaaaggactacgtacacgtgcgcatccagca 361
Query: 251 gcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagctacaa 310
||| || || | ||||| |||||||| || ||||| | ||||| |||||||||||||
Sbjct: 362 gcgtaatggtcgcaagagcctgactaccgtccagggattgaagaaggagttcagctacag 421
Query: 311 caagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtccaggatcc 370
|||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| ||
Sbjct: 422 caagatcctcaaagatctcaagaaagagttctgctgcaatggtacagtggtccaggaccc 481
Query: 371 cgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcct 430
|| || || |||||||||||||| |||||||||||| | ||||| || | | ||||||
Sbjct: 482 agaacttggacaggtcattcagctccagggtgatcagaggaagaacgtctcgaatttcct 541
Query: 431 agtccaggctgggattgcgaagaaggagctcatcaagat 469
|||||||| || |||| ||||||||||| |||||||||
Sbjct: 542 cgtccaggccggcattgtgaagaaggagcacatcaagat 580
>gb| AY103847.1 | Zea mays PCO105184 mRNA sequence
Length = 1006
Score = 196 bits (99), Expect = 6e-47
Identities = 279/339 (82%)
Strand = Plus / Plus
Query: 131 tttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggcaaa 190
||||||||||||||||||| || | | ||| ||||||||||||| || |||||||| ||
Sbjct: 360 tttcatgtctgatctcgacattcagatcccaactgccttcgatcccttcgctgaggccaa 419
Query: 191 tgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcatccagca 250
||||| ||| ||||||| | | || |||| || || || || ||||||||||||||
Sbjct: 420 tgctggggactctggtgcggcagcagggtcaaaggactacgtacacgtgcgcatccagca 479
Query: 251 gcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagctacaa 310
||| || || | ||||| |||||||| || ||||| | ||||| |||||||||||||
Sbjct: 480 gcgtaatggtcgcaagagcctgactaccgtccagggattgaagaaggagttcagctacag 539
Query: 311 caagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtccaggatcc 370
|||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| ||
Sbjct: 540 caagatcctcaaagatctcaagaaagagttctgctgcaatggtacagtggtccaggaccc 599
Query: 371 cgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcct 430
|| || || |||||||||||||| |||||||||||| | ||||| || | | ||||||
Sbjct: 600 agaacttggacaggtcattcagctccagggtgatcagaggaagaacgtctcgaatttcct 659
Query: 431 agtccaggctgggattgcgaagaaggagctcatcaagat 469
|||||||| || |||| ||||||||||| |||||||||
Sbjct: 660 cgtccaggccggcattgtgaagaaggagcacatcaagat 698
>gb| AF034944.1 |AF034944 Zea mays translation initiation factor GOS2 (TIF) mRNA, complete
cds
Length = 759
Score = 188 bits (95), Expect = 1e-44
Identities = 278/339 (82%)
Strand = Plus / Plus
Query: 131 tttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggcaaa 190
||||||||||||||||||| || | | ||| ||||||||||||| || |||||||| ||
Sbjct: 132 tttcatgtctgatctcgacattcagatcccaactgccttcgatcccttcgctgaggccaa 191
Query: 191 tgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcatccagca 250
||||| ||| ||||||| | | || |||| || || || || ||||||||||||||
Sbjct: 192 tgctggggactctggtgcggcagcagggtcaaaggactacgtacacgtgcgcatccagca 251
Query: 251 gcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagctacaa 310
||| || || | ||||| ||||| || || ||||| | ||||| |||||||||||||
Sbjct: 252 gcgtaatggtcgcaagagcctgaccaccgtccagggattgaagaaggagttcagctacag 311
Query: 311 caagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtccaggatcc 370
|||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| ||
Sbjct: 312 caagatcctcaaagatctcaagaaagagttctgctgcaatggtacagtggtccaggaccc 371
Query: 371 cgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcct 430
|| || || |||||||||||||| |||||||||||| | ||||| || | | ||||||
Sbjct: 372 agaacttggacaggtcattcagctccagggtgatcagaggaagaacgtctcgaatttcct 431
Query: 431 agtccaggctgggattgcgaagaaggagctcatcaagat 469
|||||||| || |||| ||||||||||| |||||||||
Sbjct: 432 cgtccaggccggcattgtgaagaaggagcacatcaagat 470
>emb| AJ249397.1 |PPR249397 Phleum pratense mRNA for putative protein translation factor SUI
(SUI1 gene), partial
Length = 560
Score = 186 bits (94), Expect = 5e-44
Identities = 211/250 (84%)
Strand = Plus / Plus
Query: 220 caaaagattatgtgcatgtgcgcatccagcagcgcaacggcaggaagagtctgactactg 279
||||||| || || ||||| |||||||||||||| || ||| | ||||||||||||||||
Sbjct: 26 caaaagactacgtccatgtacgcatccagcagcgtaatggccgcaagagtctgactactg 85
Query: 280 ttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaat 339
| |||||| | ||||| || |||||||||| ||||||||||| ||||||||||| || |
Sbjct: 86 tccagggcttgaagaaggaattcagctacagtaagatcctcaaagatctcaagaaagagt 145
Query: 340 tctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattcagcttcagg 399
| ||||||||||| ||||| |||||||| || ||||| |||||||||||||| || ||||
Sbjct: 146 tttgctgcaatggtacagttgtccaggacccagagcttggccaggtcattcaactccagg 205
Query: 400 gtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcgaagaaggagc 459
|||||||| | ||||| || | | |||||| ||||||||||| |||| ||| ||||| |
Sbjct: 206 gtgatcagaggaagaacgtctcaaatttcctcgtccaggctggcattgtgaaaaaggaac 265
Query: 460 tcatcaagat 469
|||||||||
Sbjct: 266 acatcaagat 275
>gb| AF380357.1 |AF380357 Porteresia coarctata translational initiation factor eIF1 mRNA,
complete cds
Length = 773
Score = 182 bits (92), Expect = 8e-43
Identities = 233/280 (83%)
Strand = Plus / Plus
Query: 128 aagtttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggc 187
|||||||||||||||||||||| || | | ||| ||||||||||||| |||||||||||
Sbjct: 149 aagtttcatgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggc 208
Query: 188 aaatgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcatcca 247
||||||| || ||||||| | | || |||| || || || ||||| ||||||||
Sbjct: 209 caatgctggagactctggtgcggctgcaggatcaaaggactacgttcatgtacgcatcca 268
Query: 248 gcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagcta 307
|||||| || ||| | ||||| ||||| ||||| ||||| | ||||| || ||||||||
Sbjct: 269 gcagcgtaatggccgtaagagcctgaccactgtccagggattgaagaaggaattcagcta 328
Query: 308 caacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtccagga 367
||||||||||||||| ||||||||||| || || ||||||||||| || || ||||||||
Sbjct: 329 caacaagatcctcaaagatctcaagaaagagttttgctgcaatggtactgttgtccagga 388
Query: 368 tcccgagctaggccaggtcattcagcttcagggtgatcag 407
|| ||||| |||||||||||||| |||||||||||||||
Sbjct: 389 cccagagcttggccaggtcattcaacttcagggtgatcag 428
>dbj| AK120697.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013170I05, full
insert sequence
Length = 752
Score = 182 bits (92), Expect = 8e-43
Identities = 233/280 (83%)
Strand = Plus / Plus
Query: 128 aagtttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggc 187
|||||||||||||||||||||| || | | ||| ||||||||||||| |||||||||||
Sbjct: 172 aagtttcatgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggc 231
Query: 188 aaatgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcatcca 247
||||||| || ||||||| | | || |||| || || || ||||| ||||||||
Sbjct: 232 caatgctggagactctggtgcggctgcaggatcaaaggactacgttcatgtacgcatcca 291
Query: 248 gcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagcta 307
|||||| || ||| | ||||| ||||| ||||| ||||| | ||||| || ||||||||
Sbjct: 292 gcagcgtaatggccgtaagagcctgaccactgtccagggattgaagaaggaattcagcta 351
Query: 308 caacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtccagga 367
||||||||||||||| ||||||||||| || || ||||||||||| || || ||||||||
Sbjct: 352 caacaagatcctcaaagatctcaagaaagagttttgctgcaatggtactgttgtccagga 411
Query: 368 tcccgagctaggccaggtcattcagcttcagggtgatcag 407
|| ||||| |||||||||||||| |||||||||||||||
Sbjct: 412 cccagagcttggccaggtcattcaacttcagggtgatcag 451
>dbj| AK105037.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C07, full
insert sequence
Length = 1275
Score = 182 bits (92), Expect = 8e-43
Identities = 233/280 (83%)
Strand = Plus / Plus
Query: 128 aagtttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggc 187
|||||||||||||||||||||| || | | ||| ||||||||||||| |||||||||||
Sbjct: 695 aagtttcatgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggc 754
Query: 188 aaatgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcatcca 247
||||||| || ||||||| | | || |||| || || || ||||| ||||||||
Sbjct: 755 caatgctggagactctggtgcggctgcaggatcaaaggactacgttcatgtacgcatcca 814
Query: 248 gcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagcta 307
|||||| || ||| | ||||| ||||| ||||| ||||| | ||||| || ||||||||
Sbjct: 815 gcagcgtaatggccgtaagagcctgaccactgtccagggattgaagaaggaattcagcta 874
Query: 308 caacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtccagga 367
||||||||||||||| ||||||||||| || || ||||||||||| || || ||||||||
Sbjct: 875 caacaagatcctcaaagatctcaagaaagagttttgctgcaatggtactgttgtccagga 934
Query: 368 tcccgagctaggccaggtcattcagcttcagggtgatcag 407
|| ||||| |||||||||||||| |||||||||||||||
Sbjct: 935 cccagagcttggccaggtcattcaacttcagggtgatcag 974
>gb| AF094774.1 |AF094774 Oryza sativa translation initiation factor (GOS2) mRNA, complete
cds
Length = 744
Score = 182 bits (92), Expect = 8e-43
Identities = 233/280 (83%)
Strand = Plus / Plus
Query: 128 aagtttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggc 187
|||||||||||||||||||||| || | | ||| ||||||||||||| |||||||||||
Sbjct: 152 aagtttcatgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggc 211
Query: 188 aaatgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcatcca 247
||||||| || ||||||| | | || |||| || || || ||||| ||||||||
Sbjct: 212 caatgctggagactctggtgcggctgcaggatcaaaggactacgttcatgtacgcatcca 271
Query: 248 gcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagcta 307
|||||| || ||| | ||||| ||||| ||||| ||||| | ||||| || ||||||||
Sbjct: 272 gcagcgtaatggccgtaagagcctgaccactgtccagggattgaagaaggaattcagcta 331
Query: 308 caacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtccagga 367
||||||||||||||| ||||||||||| || || ||||||||||| || || ||||||||
Sbjct: 332 caacaagatcctcaaagatctcaagaaagagttttgctgcaatggtactgttgtccagga 391
Query: 368 tcccgagctaggccaggtcattcagcttcagggtgatcag 407
|| ||||| |||||||||||||| |||||||||||||||
Sbjct: 392 cccagagcttggccaggtcattcaacttcagggtgatcag 431
>gb| AF508969.1 | Triticum aestivum translation initiation factor mRNA, complete cds
Length = 742
Score = 172 bits (87), Expect = 8e-40
Identities = 276/339 (81%)
Strand = Plus / Plus
Query: 131 tttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggcaaa 190
||||||||||||||| |||||| | | ||| ||||||| || || ||||| ||||| ||
Sbjct: 132 tttcatgtctgatcttgacgttcagatcccaactgcctttgacccctttgccgaggcgaa 191
Query: 191 tgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcatccagca 250
||||| ||| |||||||||| |||| ||||||| || || ||||| |||||||||||
Sbjct: 192 tgctggggacgctggtgcagctgccggatcaaaagactacgttcatgtacgcatccagca 251
Query: 251 gcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagctacaa 310
||| || || | ||||| ||||| ||||| ||||| || ||||| |||||||||||||
Sbjct: 252 gcgtaatggtcgcaagagcctgaccactgtccagggtctgaagaaggagttcagctacag 311
Query: 311 caagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtccaggatcc 370
|||||||||||| || |||||||| || || ||||||||||| ||||| |||||||| |
Sbjct: 312 caagatcctcaaagacctcaagaaagagttttgctgcaatggtacagttgtccaggacac 371
Query: 371 cgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcct 430
|| || || ||||||||||| || |||||||||||| | ||||| || | | |||||
Sbjct: 372 agaacttggacaggtcattcaactccagggtgatcagaggaagaacgtctcaaacttcct 431
Query: 431 agtccaggctgggattgcgaagaaggagctcatcaagat 469
|||||||| || |||| ||||||||| | |||||||||
Sbjct: 432 tgtccaggccggcattgtgaagaaggaacacatcaagat 470
>ref| XM_478516.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 348
Score = 168 bits (85), Expect = 1e-38
Identities = 226/273 (82%)
Strand = Plus / Plus
Query: 135 atgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggcaaatgct 194
||||||||||||||| || | | ||| ||||||||||||| ||||||||||| ||||||
Sbjct: 1 atgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggccaatgct 60
Query: 195 gaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcatccagcagcgc 254
| || ||||||| | | || |||| || || || ||||| ||||||||||||||
Sbjct: 61 ggagactctggtgcggctgcaggatcaaaggactacgttcatgtacgcatccagcagcgt 120
Query: 255 aacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagctacaacaag 314
|| ||| | ||||| ||||| ||||| ||||| | ||||| || |||||||||||||||
Sbjct: 121 aatggccgtaagagcctgaccactgtccagggattgaagaaggaattcagctacaacaag 180
Query: 315 atcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtccaggatcccgag 374
|||||||| ||||||||||| || || ||||||||||| || || |||||||| || |||
Sbjct: 181 atcctcaaagatctcaagaaagagttttgctgcaatggtactgttgtccaggacccagag 240
Query: 375 ctaggccaggtcattcagcttcagggtgatcag 407
|| |||||||||||||| |||||||||||||||
Sbjct: 241 cttggccaggtcattcaacttcagggtgatcag 273
>dbj| AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 163 bits (82), Expect = 8e-37
Identities = 139/158 (87%)
Strand = Plus / Minus
Query: 228 tatgtgcatgtgcgcatccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||| || |||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct: 33645070 tatgtacacgtgcgcattcagcagcgcaacggaagaaagagtctgactactgttcagggc 33645011
Query: 288 ctaaagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgc 347
| |||||||||| ||| |||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 33645010 ttgaagaaagagtacagttacaacaaaatcctcaaggatctgaaaaaggaattctgttgt 33644951
Query: 348 aatggcacagtagtccaggatcccgagctaggccaggt 385
||||| || |||||||| ||||| ||| ||||||||||
Sbjct: 33644950 aatggtactgtagtccaagatccagagttaggccaggt 33644913
Score = 67.9 bits (34), Expect = 3e-08
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 381 caggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcctagtccagg 438
||||||||||| ||||| |||||||||||||| |||||||| || |||||||| ||||
Sbjct: 33644825 caggtcattcaacttcaaggtgatcagcgtaaaaatgttgcgacgttcctagttcagg 33644768
Score = 44.1 bits (22), Expect = 0.50
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 118 ctcaacaaccaagtttcatgtctgatctcgacgt 151
|||||| | ||| |||||||||||||||||||||
Sbjct: 33645489 ctcaactagcaaatttcatgtctgatctcgacgt 33645456
>dbj| AP003290.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0684C02
Length = 80086
Score = 163 bits (82), Expect = 8e-37
Identities = 139/158 (87%)
Strand = Plus / Minus
Query: 228 tatgtgcatgtgcgcatccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||| || |||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct: 59942 tatgtacacgtgcgcattcagcagcgcaacggaagaaagagtctgactactgttcagggc 59883
Query: 288 ctaaagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgc 347
| |||||||||| ||| |||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 59882 ttgaagaaagagtacagttacaacaaaatcctcaaggatctgaaaaaggaattctgttgt 59823
Query: 348 aatggcacagtagtccaggatcccgagctaggccaggt 385
||||| || |||||||| ||||| ||| ||||||||||
Sbjct: 59822 aatggtactgtagtccaagatccagagttaggccaggt 59785
Score = 67.9 bits (34), Expect = 3e-08
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 381 caggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcctagtccagg 438
||||||||||| ||||| |||||||||||||| |||||||| || |||||||| ||||
Sbjct: 59697 caggtcattcaacttcaaggtgatcagcgtaaaaatgttgcgacgttcctagttcagg 59640
Score = 44.1 bits (22), Expect = 0.50
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 118 ctcaacaaccaagtttcatgtctgatctcgacgt 151
|||||| | ||| |||||||||||||||||||||
Sbjct: 60361 ctcaactagcaaatttcatgtctgatctcgacgt 60328
>gb| BT013262.1 | Lycopersicon esculentum clone 134804F, mRNA sequence
Length = 1343
Score = 155 bits (78), Expect = 2e-34
Identities = 174/206 (84%)
Strand = Plus / Plus
Query: 261 aggaagagtctgactactgttcagggcctaaagaaagagttcagctacaacaagatcctc 320
||||| || ||||| ||||| ||||| | |||||||| |||||||| |||||||| ||
Sbjct: 893 aggaaaagcctgacaactgtgcaggggttgaagaaagaattcagctataacaagatactg 952
Query: 321 aaggatctcaagaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggc 380
|||||||||||||| ||||||||||||||||| || || ||||||||||| || ||||||
Sbjct: 953 aaggatctcaagaaagaattctgctgcaatggtactgttgtccaggatcctgaactaggc 1012
Query: 381 caggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggct 440
||||| ||||| ||||||||||| ||| | ||||| ||| |||| || || |||||||||
Sbjct: 1013 caggttattcaacttcagggtgaccagaggaagaacgtttctacctttcttgtccaggct 1072
Query: 441 gggattgcgaagaaggagctcatcaa 466
|| || | |||||| |||| ||||||
Sbjct: 1073 ggaatcgtgaagaaagagcacatcaa 1098
Score = 54.0 bits (27), Expect = 5e-04
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 126 ccaagtttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgag 185
|||||||||||||||||||||||||| |||| | || || ||||| |||||||||
Sbjct: 764 ccaagtttcatgtctgatctcgacgtccaaattcctaccgcttttgatccctttgctgag 823
Query: 186 gcaaatgctga 196
|||||||||||
Sbjct: 824 gcaaatgctga 834
>dbj| AB003378.1 | Salix bakko mRNA for SUI1 homolog, complete cds
Length = 700
Score = 141 bits (71), Expect = 3e-30
Identities = 205/250 (82%), Gaps = 6/250 (2%)
Strand = Plus / Plus
Query: 157 ttccatctgccttcgatccttttgctgaggcaaatgctgaggatgctggtgcaggccccg 216
||||| |||| |||||||| || |||||||||||||||||||| ||||||| || |
Sbjct: 161 ttccaactgctttcgatcccttcgctgaggcaaatgctgaggactctggtgctgggac-- 218
Query: 217 gcgcaaaagattatgtgcatgtgcgcatccagcagcgcaacggcaggaagagtctgacta 276
|||||||||||| |||||||| | |||||||| || || ||||| || |||||||
Sbjct: 219 ----aaaagattatgttcatgtgcgtgtacagcagcgtaatggaaggaaaagcctgacta 274
Query: 277 ctgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctcaagaagg 336
||||||| || | ||||| || | |||||||||||||| || ||||| |||||||| |
Sbjct: 275 ctgttcaaggattgaagaaggactatagctacaacaagatacttaaggacctcaagaaag 334
Query: 337 aattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattcagcttc 396
| |||||||||||||| || || ||||||||||| ||| |||| ||||||||||| || |
Sbjct: 335 agttctgctgcaatggaactgttgtccaggatcctgagttagggcaggtcattcaactac 394
Query: 397 agggtgatca 406
||||||||||
Sbjct: 395 agggtgatca 404
>gb| DQ222518.1 | Solanum tuberosum clone 120A06 unknown mRNA
Length = 699
Score = 139 bits (70), Expect = 1e-29
Identities = 172/206 (83%)
Strand = Plus / Plus
Query: 261 aggaagagtctgactactgttcagggcctaaagaaagagttcagctacaacaagatcctc 320
||||| || ||||| ||||| ||||| | |||||||| || ||||| |||||||| ||
Sbjct: 266 aggaaaagcctgacaactgtgcaggggttgaagaaagaatttagctataacaagatactg 325
Query: 321 aaggatctcaagaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggc 380
|||||||||||||| || |||||||||||||| || || || |||||||| || ||||||
Sbjct: 326 aaggatctcaagaaagagttctgctgcaatggtactgtcgttcaggatcctgaactaggc 385
Query: 381 caggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggct 440
||||| ||||| ||||||| ||| ||||| ||||| ||| |||| || || |||||||||
Sbjct: 386 caggttattcaacttcaggatgaccagcggaagaacgtttctacatttcttgtccaggct 445
Query: 441 gggattgcgaagaaggagctcatcaa 466
|| |||| |||||| |||| ||||||
Sbjct: 446 ggaattgtgaagaaagagcacatcaa 471
Score = 44.1 bits (22), Expect = 0.50
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 171 gatccttttgctgaggcaaatgctga 196
||||| ||||||||||||||||||||
Sbjct: 182 gatccgtttgctgaggcaaatgctga 207
Score = 44.1 bits (22), Expect = 0.50
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 128 aagtttcatgtctgatctcgac 149
||||||||||||||||||||||
Sbjct: 139 aagtttcatgtctgatctcgac 160
>emb| AJ309088.1 |PPI309088 Pinus pinaster partial mRNA for putative translation factor
Length = 635
Score = 139 bits (70), Expect = 1e-29
Identities = 270/337 (80%), Gaps = 6/337 (1%)
Strand = Plus / Plus
Query: 121 aacaaccaagtttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttg 180
||||| |||| |||||||| ||||| |||||| | |||| ||||| ||||||||||
Sbjct: 181 aacaaacaaggttcatgtcagatctagacgttcagattccgggtgcctatgatccttttg 240
Query: 181 ctgaggcaaatgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgc 240
|||| ||||||||||| ||| | ||||| ||| | ||||| |||||||||||||
Sbjct: 241 ctgatgcaaatgctgaagattcaggtgc------cggatctaaagaatatgtgcatgtgc 294
Query: 241 gcatccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagt 300
|||| |||||||||||||| || ||||||||||| ||||| || || ||| ||| || |
Sbjct: 295 gcatacagcagcgcaacggtagaaagagtctgacaactgtgcaaggtttaaggaaggaat 354
Query: 301 tcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtag 360
| ||||||||||| || ||||| || ||||| || ||||| || || ||||| || || |
Sbjct: 355 ttagctacaacaaaattctcaaagacctcaaaaaagaattttgttgtaatgggactgttg 414
Query: 361 tccaggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttg 420
| |||||||| || || || ||||| |||||||| ||||||||||| ||||| ||||||
Sbjct: 415 tgcaggatcctgaacttgggcaggtgattcagctacagggtgatcaacgtaaaaatgttt 474
Query: 421 ctactttcctagtccaggctgggattgcgaagaagga 457
| | |||||| || |||||||| |||| ||| |||||
Sbjct: 475 caaatttccttgtacaggctggaattgtgaaaaagga 511
>emb| AJ519839.1 |CAR519839 Coffea arabica mRNA for SUI1 protein
Length = 678
Score = 123 bits (62), Expect = 7e-25
Identities = 185/226 (81%)
Strand = Plus / Plus
Query: 220 caaaagattatgtgcatgtgcgcatccagcagcgcaacggcaggaagagtctgactactg 279
|||| |||||||||||| | || ||||| || || || || ||||| || ||||||||||
Sbjct: 214 caaaggattatgtgcatatccgtatccaacaacgtaatggtaggaaaagcctgactactg 273
Query: 280 ttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaat 339
| || || | |||||||||||||| ||||| || ||||| ||||| |||||||| || |
Sbjct: 274 tgcaagggttgaagaaagagttcagttacaataaaatcctgaaggacctcaagaaagagt 333
Query: 340 tctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattcagcttcagg 399
| ||||||||||| || || ||||| || || || ||||||||||||||||| || || |
Sbjct: 334 tttgctgcaatggtactgttgtccaagacccagaactaggccaggtcattcaactccaag 393
Query: 400 gtgatcagcgtaagaatgttgctactttcctagtccaggctgggat 445
| |||||||||||||||||| | | ||||| || |||||||||||
Sbjct: 394 gggatcagcgtaagaatgtttcaagcttccttgttcaggctgggat 439
>dbj| AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 119 bits (60), Expect = 1e-23
Identities = 129/152 (84%)
Strand = Plus / Minus
Query: 234 catgtgcgcatccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaag 293
||||| |||||||||||||| || ||| | ||||| ||||| ||||| ||||| | |||
Sbjct: 20680328 catgtacgcatccagcagcgtaatggccgtaagagcctgaccactgtccagggattgaag 20680269
Query: 294 aaagagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggc 353
|| || ||||||||||||||||||||||| ||||||||||| || || |||||||||||
Sbjct: 20680268 aaggaattcagctacaacaagatcctcaaagatctcaagaaagagttttgctgcaatggt 20680209
Query: 354 acagtagtccaggatcccgagctaggccaggt 385
|| || |||||||| || ||||| ||||||||
Sbjct: 20680208 actgttgtccaggacccagagcttggccaggt 20680177
Score = 44.1 bits (22), Expect = 0.50
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 128 aagtttcatgtctgatctcgac 149
||||||||||||||||||||||
Sbjct: 20680519 aagtttcatgtctgatctcgac 20680498
Score = 44.1 bits (22), Expect = 0.50
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 382 aggtcattcagcttcagggtgatcag 407
|||||||||| |||||||||||||||
Sbjct: 20680089 aggtcattcaacttcagggtgatcag 20680064
Score = 44.1 bits (22), Expect = 0.50
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 382 aggtcattcagcttcagggtgatcagcgtaagaatgtt 419
||||||||||| |||| |||||||| ||||| ||||||
Sbjct: 10476256 aggtcattcagattcaaggtgatcaacgtaaaaatgtt 10476293
>dbj| AP004674.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0681F05
Length = 144741
Score = 119 bits (60), Expect = 1e-23
Identities = 129/152 (84%)
Strand = Plus / Minus
Query: 234 catgtgcgcatccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaag 293
||||| |||||||||||||| || ||| | ||||| ||||| ||||| ||||| | |||
Sbjct: 33078 catgtacgcatccagcagcgtaatggccgtaagagcctgaccactgtccagggattgaag 33019
Query: 294 aaagagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggc 353
|| || ||||||||||||||||||||||| ||||||||||| || || |||||||||||
Sbjct: 33018 aaggaattcagctacaacaagatcctcaaagatctcaagaaagagttttgctgcaatggt 32959
Query: 354 acagtagtccaggatcccgagctaggccaggt 385
|| || |||||||| || ||||| ||||||||
Sbjct: 32958 actgttgtccaggacccagagcttggccaggt 32927
Score = 44.1 bits (22), Expect = 0.50
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 128 aagtttcatgtctgatctcgac 149
||||||||||||||||||||||
Sbjct: 33269 aagtttcatgtctgatctcgac 33248
Score = 44.1 bits (22), Expect = 0.50
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 382 aggtcattcagcttcagggtgatcag 407
|||||||||| |||||||||||||||
Sbjct: 32839 aggtcattcaacttcagggtgatcag 32814
>gb| DQ083224.1 | Oryza sativa (indica cultivar-group) clone 5B11F72 mRNA sequence
Length = 358
Score = 115 bits (58), Expect = 2e-22
Identities = 181/222 (81%)
Strand = Plus / Plus
Query: 128 aagtttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggc 187
|||||||||||||||||||||| || | | ||| ||||||||||||| |||||||||||
Sbjct: 137 aagtttcatgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggc 196
Query: 188 aaatgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgtgcgcatcca 247
||||||| || ||||||| | | || |||| || || || ||||| ||||||||
Sbjct: 197 caatgctggagactctggtgcggctgcaggatcaaaggactacgttcatgtacgcatcca 256
Query: 248 gcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagcta 307
|||||| || ||| | ||||| ||||| ||||| ||||| | ||||| || ||||||||
Sbjct: 257 gcagcgtaatggccgtaagagcctgaccactgtccagggattgaagaaggaattcagcta 316
Query: 308 caacaagatcctcaaggatctcaagaaggaattctgctgcaa 349
|||||||||||| || ||||||||||| || || ||||||||
Sbjct: 317 caacaagatccttaaagatctcaagaaagagttttgctgcaa 358
>emb| X51910.1 |OSGOS2G O.sativa (rice) constitutive GOS2 gene
Length = 3192
Score = 111 bits (56), Expect = 3e-21
Identities = 128/152 (84%)
Strand = Plus / Plus
Query: 234 catgtgcgcatccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaag 293
||||| |||||||||||||| || ||| | ||||| ||||| ||||| ||||| | |||
Sbjct: 2384 catgtacgcatccagcagcgtaatggccgtaagagcctgaccactgtccagggattgaag 2443
Query: 294 aaagagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggc 353
|| || |||||||||||||||||||| || ||||||||||| || || |||||||||||
Sbjct: 2444 aaggaattcagctacaacaagatccttaaagatctcaagaaagagttttgctgcaatggt 2503
Query: 354 acagtagtccaggatcccgagctaggccaggt 385
|| || |||||||| || ||||| ||||||||
Sbjct: 2504 actgttgtccaggacccagagcttggccaggt 2535
Score = 44.1 bits (22), Expect = 0.50
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 382 aggtcattcagcttcagggtgatcag 407
|||||||||| |||||||||||||||
Sbjct: 2623 aggtcattcaacttcagggtgatcag 2648
Score = 44.1 bits (22), Expect = 0.50
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 128 aagtttcatgtctgatctcgac 149
||||||||||||||||||||||
Sbjct: 2193 aagtttcatgtctgatctcgac 2214
>gb| BT013323.1 | Lycopersicon esculentum clone 135043R, mRNA sequence
Length = 787
Score = 103 bits (52), Expect = 6e-19
Identities = 127/152 (83%)
Strand = Plus / Plus
Query: 291 aagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaat 350
|||||||| ||||||||||| || || || ||||| || ||||| || || |||||||||
Sbjct: 320 aagaaagaattcagctacaataaaatactaaaggaccttaagaaagagttttgctgcaat 379
Query: 351 ggcacagtagtccaggatcccgagctaggccaggtcattcagcttcagggtgatcagcgt 410
|| || || ||||||||||| || ||||||||||| ||||| || |||||||||||| |
Sbjct: 380 ggtactgttgtccaggatccagaactaggccaggttattcaactccagggtgatcagaga 439
Query: 411 aagaatgttgctactttcctagtccaggctgg 442
||||| ||| |||| || || |||||||||||
Sbjct: 440 aagaacgtttctacatttcttgtccaggctgg 471
Score = 50.1 bits (25), Expect = 0.008
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 128 aagtttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggc 187
|||||||||||||||||||||| | |||| |||| || ||||| |||||||||||
Sbjct: 163 aagtttcatgtctgatctcgacctccaagttcccgctgcttttgatccctttgctgaggc 222
Query: 188 aaatgctga 196
|||||||||
Sbjct: 223 aaatgctga 231
>ref| NM_104307.3 | Arabidopsis thaliana translation initiation factor AT1G54290 mRNA,
complete cds
Length = 811
Score = 101 bits (51), Expect = 2e-18
Identities = 153/187 (81%)
Strand = Plus / Plus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| ||||| ||||| || |||||||||| ||||| | |||||| || || || || |
Sbjct: 375 tgacaactgtccaggggcttaagaaagagtatagctatagcaagatacttaaagacctta 434
Query: 331 agaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattc 390
|||| |||||||||||||||||||| || |||||||| | || |||| ||||| ||||
Sbjct: 435 agaaagaattctgctgcaatggcaccgtcgtccaggactctgaattaggacaggttattc 494
Query: 391 agcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcga 450
||||||| ||||||||| | ||||| || |||| ||||| || ||||||||| ||| ||
Sbjct: 495 agcttcaaggtgatcagaggaagaacgtatctacgttccttgttcaggctgggcttgtga 554
Query: 451 agaagga 457
|||||||
Sbjct: 555 agaagga 561
Score = 42.1 bits (21), Expect = 2.0
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 163 ctgccttcgatccttttgctgaggcaaatgctgagga 199
||||||| ||||| || ||||| ||||||||||||||
Sbjct: 273 ctgcctttgatccgttcgctgatgcaaatgctgagga 309
>gb| BT000649.1 | Arabidopsis thaliana putative protein translation factor Sui1
homolog (At1g54290/F20D21_53) mRNA, complete cds
Length = 342
Score = 101 bits (51), Expect = 2e-18
Identities = 153/187 (81%)
Strand = Plus / Plus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| ||||| ||||| || |||||||||| ||||| | |||||| || || || || |
Sbjct: 131 tgacaactgtccaggggcttaagaaagagtatagctatagcaagatacttaaagacctta 190
Query: 331 agaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattc 390
|||| |||||||||||||||||||| || |||||||| | || |||| ||||| ||||
Sbjct: 191 agaaagaattctgctgcaatggcaccgtcgtccaggactctgaattaggacaggttattc 250
Query: 391 agcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcga 450
||||||| ||||||||| | ||||| || |||| ||||| || ||||||||| ||| ||
Sbjct: 251 agcttcaaggtgatcagaggaagaacgtatctacgttccttgttcaggctgggcttgtga 310
Query: 451 agaagga 457
|||||||
Sbjct: 311 agaagga 317
Score = 42.1 bits (21), Expect = 2.0
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 163 ctgccttcgatccttttgctgaggcaaatgctgagga 199
||||||| ||||| || ||||| ||||||||||||||
Sbjct: 29 ctgcctttgatccgttcgctgatgcaaatgctgagga 65
>gb| AF372910.1 |AF372910 Arabidopsis thaliana At1g54290/F20D21_53 mRNA, complete cds
Length = 742
Score = 101 bits (51), Expect = 2e-18
Identities = 153/187 (81%)
Strand = Plus / Plus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| ||||| ||||| || |||||||||| ||||| | |||||| || || || || |
Sbjct: 313 tgacaactgtccaggggcttaagaaagagtatagctatagcaagatacttaaagacctta 372
Query: 331 agaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattc 390
|||| |||||||||||||||||||| || |||||||| | || |||| ||||| ||||
Sbjct: 373 agaaagaattctgctgcaatggcaccgtcgtccaggactctgaattaggacaggttattc 432
Query: 391 agcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcga 450
||||||| ||||||||| | ||||| || |||| ||||| || ||||||||| ||| ||
Sbjct: 433 agcttcaaggtgatcagaggaagaacgtatctacgttccttgttcaggctgggcttgtga 492
Query: 451 agaagga 457
|||||||
Sbjct: 493 agaagga 499
Score = 42.1 bits (21), Expect = 2.0
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 163 ctgccttcgatccttttgctgaggcaaatgctgagga 199
||||||| ||||| || ||||| ||||||||||||||
Sbjct: 211 ctgcctttgatccgttcgctgatgcaaatgctgagga 247
>emb| BX817291.1 |CNS0ACKO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL12ZC05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 748
Score = 101 bits (51), Expect = 2e-18
Identities = 153/187 (81%)
Strand = Plus / Plus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| ||||| ||||| || |||||||||| ||||| | |||||| || || || || |
Sbjct: 312 tgacaactgtccaggggcttaagaaagagtatagctatagcaagatacttaaagacctta 371
Query: 331 agaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattc 390
|||| |||||||||||||||||||| || |||||||| | || |||| ||||| ||||
Sbjct: 372 agaaagaattctgctgcaatggcaccgtcgtccaggactctgaattaggacaggttattc 431
Query: 391 agcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcga 450
||||||| ||||||||| | ||||| || |||| ||||| || ||||||||| ||| ||
Sbjct: 432 agcttcaaggtgatcagaggaagaacgtatctacgttccttgttcaggctgggcttgtga 491
Query: 451 agaagga 457
|||||||
Sbjct: 492 agaagga 498
Score = 42.1 bits (21), Expect = 2.0
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 163 ctgccttcgatccttttgctgaggcaaatgctgagga 199
||||||| ||||| || ||||| ||||||||||||||
Sbjct: 210 ctgcctttgatccgttcgctgatgcaaatgctgagga 246
>ref| NM_124857.2 | Arabidopsis thaliana translation initiation factor AT5G54760 mRNA,
complete cds
Length = 706
Score = 97.6 bits (49), Expect = 4e-17
Identities = 193/241 (80%)
Strand = Plus / Plus
Query: 244 tccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttca 303
|||||||||| || || ||||| || |||| || || |||||||| |||||||||| ||
Sbjct: 250 tccagcagcgaaatggtaggaaaagcttgacaaccgtccagggcctgaagaaagagtaca 309
Query: 304 gctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtcc 363
|||| | |||||| || ||||| |||||||| || || |||||||| ||||| || || |
Sbjct: 310 gctataccaagatacttaaggacctcaagaaagagttttgctgcaacggcactgtggttc 369
Query: 364 aggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgcta 423
||||| | || || || ||||| || |||||||| ||||| || |||||||| || | |
Sbjct: 370 aggattcagaactcggacaggttatacagcttcaaggtgaccaacgtaagaacgtctcca 429
Query: 424 ctttcctagtccaggctgggattgcgaagaaggagctcatcaagatccacggcttctaag 483
| ||||| ||||||||||| | | ||||||||| |||||||||||| || |||||||
Sbjct: 430 cattccttgtccaggctggtttggtgaagaaggataacatcaagatccatggtttctaag 489
Query: 484 c 484
|
Sbjct: 490 c 490
>dbj| AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 97.6 bits (49), Expect = 4e-17
Identities = 79/89 (88%)
Strand = Plus / Minus
Query: 297 gagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcaca 356
|||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| ||
Sbjct: 2841041 gagttcagttacaacaagatcctcaatgatctgaaaaaggaattctgctgcaatggtact 2840982
Query: 357 gtagtccaggatcccgagctaggccaggt 385
||| |||| ||||| ||||| ||||||||
Sbjct: 2840981 gtactccaagatccagagcttggccaggt 2840953
Score = 56.0 bits (28), Expect = 1e-04
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 382 aggtcattcagcttcagggtgatcagcgtaagaatg 417
|||||||||||||||| ||||||||| |||||||||
Sbjct: 2840875 aggtcattcagcttcatggtgatcagtgtaagaatg 2840840
>dbj| AP005412.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0050G13
Length = 150685
Score = 97.6 bits (49), Expect = 4e-17
Identities = 79/89 (88%)
Strand = Plus / Minus
Query: 297 gagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcaca 356
|||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| ||
Sbjct: 109269 gagttcagttacaacaagatcctcaatgatctgaaaaaggaattctgctgcaatggtact 109210
Query: 357 gtagtccaggatcccgagctaggccaggt 385
||| |||| ||||| ||||| ||||||||
Sbjct: 109209 gtactccaagatccagagcttggccaggt 109181
Score = 56.0 bits (28), Expect = 1e-04
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 382 aggtcattcagcttcagggtgatcagcgtaagaatg 417
|||||||||||||||| ||||||||| |||||||||
Sbjct: 109103 aggtcattcagcttcatggtgatcagtgtaagaatg 109068
>gb| BT005836.1 | Arabidopsis thaliana At5g54760 gene, complete cds
Length = 342
Score = 93.7 bits (47), Expect = 6e-16
Identities = 191/239 (79%)
Strand = Plus / Plus
Query: 244 tccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttca 303
|||||||||| || || ||||| || |||| || || |||||||| |||||||||| ||
Sbjct: 104 tccagcagcgaaatggtaggaaaagcttgacaaccgtccagggcctgaagaaagagtaca 163
Query: 304 gctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtcc 363
|||| | |||||| || ||||| |||||||| || || |||||||| ||||| || || |
Sbjct: 164 gctataccaagatacttaaggacctcaagaaagagttttgctgcaacggcactgtggttc 223
Query: 364 aggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgcta 423
||||| | || || || ||||| || |||||||| ||||| || |||||||| || | |
Sbjct: 224 aggattcagaactcggacaggttatacagcttcaaggtgaccaacgtaagaacgtctcca 283
Query: 424 ctttcctagtccaggctgggattgcgaagaaggagctcatcaagatccacggcttctaa 482
| ||||| ||||||||||| | | ||||||||| |||||||||||| || ||||||
Sbjct: 284 cattccttgtccaggctggtttggtgaagaaggataacatcaagatccatggtttctaa 342
>ref| NM_118847.2 | Arabidopsis thaliana translation initiation factor AT4G27130 mRNA,
complete cds
Length = 811
Score = 89.7 bits (45), Expect = 9e-15
Identities = 183/229 (79%)
Strand = Plus / Plus
Query: 244 tccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttca 303
|||||||||| || || ||||| || |||| || || ||||| || |||||||||| ||
Sbjct: 354 tccagcagcggaatggtaggaaaagcttgacaacggtccaggggctgaagaaagagtaca 413
Query: 304 gctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtcc 363
|||||| |||||| || ||||| |||||||| ||||| |||||||| || || || || |
Sbjct: 414 gctacaccaagatacttaaggacctcaagaaagaattttgctgcaacggaactgtggttc 473
Query: 364 aggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgcta 423
| || | || || || ||||| ||||||||||| || |||||| | ||||| || | |
Sbjct: 474 aagactcagaactcggacaggttattcagcttcaaggcgatcagaggaagaacgtctcca 533
Query: 424 ctttcctagtccaggctgggattgcgaagaaggagctcatcaagatcca 472
| |||||||||||||||||| ||| |||||| || ||||||||||||
Sbjct: 534 cgttcctagtccaggctgggcttgtgaagaaagataacatcaagatcca 582
Score = 42.1 bits (21), Expect = 2.0
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 163 ctgccttcgatccttttgctgaggcaaatgctgagga 199
|||||||||| || |||||||| || |||||||||||
Sbjct: 279 ctgccttcgacccgtttgctgatgcgaatgctgagga 315
>gb| AY060537.1 | Arabidopsis thaliana AT4g27130/T24A18_80 mRNA, complete cds
Length = 342
Score = 89.7 bits (45), Expect = 9e-15
Identities = 183/229 (79%)
Strand = Plus / Plus
Query: 244 tccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttca 303
|||||||||| || || ||||| || |||| || || ||||| || |||||||||| ||
Sbjct: 104 tccagcagcggaatggtaggaaaagcttgacaacggtccaggggctgaagaaagagtaca 163
Query: 304 gctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtcc 363
|||||| |||||| || ||||| |||||||| ||||| |||||||| || || || || |
Sbjct: 164 gctacaccaagatacttaaggacctcaagaaagaattttgctgcaacggaactgtggttc 223
Query: 364 aggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgcta 423
| || | || || || ||||| ||||||||||| || |||||| | ||||| || | |
Sbjct: 224 aagactcagaactcggacaggttattcagcttcaaggcgatcagaggaagaacgtctcca 283
Query: 424 ctttcctagtccaggctgggattgcgaagaaggagctcatcaagatcca 472
| |||||||||||||||||| ||| |||||| || ||||||||||||
Sbjct: 284 cgttcctagtccaggctgggcttgtgaagaaagataacatcaagatcca 332
Score = 42.1 bits (21), Expect = 2.0
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 163 ctgccttcgatccttttgctgaggcaaatgctgagga 199
|||||||||| || |||||||| || |||||||||||
Sbjct: 29 ctgccttcgacccgtttgctgatgcgaatgctgagga 65
>gb| AY037234.1 | Arabidopsis thaliana AT4g27130/T24A18_80 mRNA, complete cds
Length = 737
Score = 89.7 bits (45), Expect = 9e-15
Identities = 183/229 (79%)
Strand = Plus / Plus
Query: 244 tccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttca 303
|||||||||| || || ||||| || |||| || || ||||| || |||||||||| ||
Sbjct: 306 tccagcagcggaatggtaggaaaagcttgacaacggtccaggggctgaagaaagagtaca 365
Query: 304 gctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtcc 363
|||||| |||||| || ||||| |||||||| ||||| |||||||| || || || || |
Sbjct: 366 gctacaccaagatacttaaggacctcaagaaagaattttgctgcaacggaactgtggttc 425
Query: 364 aggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgcta 423
| || | || || || ||||| ||||||||||| || |||||| | ||||| || | |
Sbjct: 426 aagactcagaactcggacaggttattcagcttcaaggcgatcagaggaagaacgtctcca 485
Query: 424 ctttcctagtccaggctgggattgcgaagaaggagctcatcaagatcca 472
| |||||||||||||||||| ||| |||||| || ||||||||||||
Sbjct: 486 cgttcctagtccaggctgggcttgtgaagaaagataacatcaagatcca 534
Score = 42.1 bits (21), Expect = 2.0
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 163 ctgccttcgatccttttgctgaggcaaatgctgagga 199
|||||||||| || |||||||| || |||||||||||
Sbjct: 231 ctgccttcgacccgtttgctgatgcgaatgctgagga 267
>emb| BX828314.1 |CNS0A3U9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH75ZH04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 738
Score = 89.7 bits (45), Expect = 9e-15
Identities = 183/229 (79%)
Strand = Plus / Plus
Query: 244 tccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttca 303
|||||||||| || || ||||| || |||| || || ||||| || |||||||||| ||
Sbjct: 283 tccagcagcggaatggtaggaaaagcttgacaacggtccaggggctgaagaaagagtaca 342
Query: 304 gctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtcc 363
|||||| |||||| || ||||| |||||||| ||||| |||||||| || || || || |
Sbjct: 343 gctacaccaagatacttaaggacctcaagaaagaattttgctgcaacggaactgtggttc 402
Query: 364 aggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgcta 423
| || | || || || ||||| ||||||||||| || |||||| | ||||| || | |
Sbjct: 403 aagactcagaactcggacaggttattcagcttcaaggcgatcagaggaagaacgtctcca 462
Query: 424 ctttcctagtccaggctgggattgcgaagaaggagctcatcaagatcca 472
| |||||||||||||||||| ||| |||||| || ||||||||||||
Sbjct: 463 cgttcctagtccaggctgggcttgtgaagaaagataacatcaagatcca 511
Score = 42.1 bits (21), Expect = 2.0
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 163 ctgccttcgatccttttgctgaggcaaatgctgagga 199
|||||||||| || |||||||| || |||||||||||
Sbjct: 208 ctgccttcgacccgtttgctgatgcgaatgctgagga 244
>gb| AY088288.1 | Arabidopsis thaliana clone 5206 mRNA, complete sequence
Length = 805
Score = 89.7 bits (45), Expect = 9e-15
Identities = 183/229 (79%)
Strand = Plus / Plus
Query: 244 tccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttca 303
|||||||||| || || ||||| || |||| || || ||||| || |||||||||| ||
Sbjct: 354 tccagcagcggaatggtaggaaaagcttgacaacggtccaggggctgaagaaagagtaca 413
Query: 304 gctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtcc 363
|||||| |||||| || ||||| |||||||| ||||| |||||||| || || || || |
Sbjct: 414 gctacaccaagatacttaaggacctcaagaaagaattttgctgcaacggaactgtggttc 473
Query: 364 aggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgcta 423
| || | || || || ||||| ||||||||||| || |||||| | ||||| || | |
Sbjct: 474 aagactcagaactcggacaggttattcagcttcaaggcgatcagaggaagaacgtctcca 533
Query: 424 ctttcctagtccaggctgggattgcgaagaaggagctcatcaagatcca 472
| |||||||||||||||||| ||| |||||| || ||||||||||||
Sbjct: 534 cgttcctagtccaggctgggcttgtgaagaaagataacatcaagatcca 582
Score = 42.1 bits (21), Expect = 2.0
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 163 ctgccttcgatccttttgctgaggcaaatgctgagga 199
|||||||||| || |||||||| || |||||||||||
Sbjct: 279 ctgccttcgacccgtttgctgatgcgaatgctgagga 315
>emb| BX828730.1 |CNS0A3GG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL33ZF02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 735
Score = 85.7 bits (43), Expect = 1e-13
Identities = 154/191 (80%)
Strand = Plus / Plus
Query: 282 cagggcctaaagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaattc 341
||||| || |||||||||| |||||||| |||||| || ||||| |||||||| |||||
Sbjct: 322 caggggctgaagaaagagtacagctacaccaagatacttaaggacctcaagaaagaattt 381
Query: 342 tgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattcagcttcagggt 401
|||||||| || || || || || || | || || || ||||| ||||||||||| ||
Sbjct: 382 tgctgcaacggaactgtggttcaagactcagaactcggacaggttattcagcttcaaggc 441
Query: 402 gatcagcgtaagaatgttgctactttcctagtccaggctgggattgcgaagaaggagctc 461
|||||| | ||||| || | || |||||||||||||||||| ||| |||||| || |
Sbjct: 442 gatcagaggaagaacgtctccacgttcctagtccaggctgggcttgtgaagaaagataac 501
Query: 462 atcaagatcca 472
|||||||||||
Sbjct: 502 atcaagatcca 512
Score = 42.1 bits (21), Expect = 2.0
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 163 ctgccttcgatccttttgctgaggcaaatgctgagga 199
|||||||||| || |||||||| || |||||||||||
Sbjct: 209 ctgccttcgacccgtttgctgatgcgaatgctgagga 245
>gb| L41693.1 |PS300016E Eucalyptus globulus bicostata symbiont (F00058) mRNA, ESTun016
Length = 256
Score = 79.8 bits (40), Expect = 9e-12
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 244 tccagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttca 303
||||||||||||| || ||||| || |||| ||||| || || || ||||| |||||||
Sbjct: 129 tccagcagcgcaatggtaggaaaagcttgaccactgtgcaaggtctgaagaaggagttca 188
Query: 304 gctacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtcc 363
|||| |||||||| |||||||| || ||||| |||| ||||||||||| || ||||| |
Sbjct: 189 gctataacaagatactcaaggacctgaagaaacaattttgctgcaatggaactgtagttc 248
Query: 364 agga 367
||||
Sbjct: 249 agga 252
>emb| AJ519840.1 |CAR519840 Coffea arabica sui1 gene, exons 1-5
Length = 2677
Score = 77.8 bits (39), Expect = 4e-11
Identities = 135/167 (80%)
Strand = Plus / Plus
Query: 220 caaaagattatgtgcatgtgcgcatccagcagcgcaacggcaggaagagtctgactactg 279
|||| |||||||||||| | || ||||| || || || || ||||| || ||||||||||
Sbjct: 1961 caaaggattatgtgcatatccgtatccaacaacgtaatggtaggaaaagcctgactactg 2020
Query: 280 ttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaat 339
| || || | || ||||||||||| ||||| || ||||| ||||| |||||||| || |
Sbjct: 2021 tgcaagggttgaacaaagagttcagttacaataaaatcctgaaggacctcaagaaagagt 2080
Query: 340 tctgctgcaatggcacagtagtccaggatcccgagctaggccaggtc 386
| ||||||||||| || || ||||| || || || ||||||||||||
Sbjct: 2081 tttgctgcaatggtactgttgtccaagacccagaactaggccaggtc 2127
Score = 44.1 bits (22), Expect = 0.50
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 382 aggtcattcagcttcagggtgatcagcgtaagaatgtt 419
|||||||||| || || || ||||||||||||||||||
Sbjct: 2209 aggtcattcaactccaaggggatcagcgtaagaatgtt 2246
>gb| DQ083225.1 | Oryza sativa (indica cultivar-group) clone 5B11G73 mRNA sequence
Length = 268
Score = 71.9 bits (36), Expect = 2e-09
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 128 aagtttcatgtctgatctcgacgttacgcttccatctgccttcgatccttttgctgaggc 187
|||||||||||||||||||||| || | | ||| ||||||||||||| |||||||||||
Sbjct: 158 aagtttcatgtctgatctcgacattcagatcccaactgccttcgatccctttgctgaggc 217
Query: 188 aaatgctg 195
|||||||
Sbjct: 218 caatgctg 225
>gb| AF098672.1 |AF098672 Brassica oleracea translation initiation factor nps45 mRNA,
complete cds
Length = 560
Score = 71.9 bits (36), Expect = 2e-09
Identities = 168/212 (79%)
Strand = Plus / Plus
Query: 246 cagcagcgcaacggcaggaagagtctgactactgttcagggcctaaagaaagagttcagc 305
|||||||| || || ||||| || |||| ||||| ||||| || |||||||||| ||||
Sbjct: 133 cagcagcgtaatggtaggaaaagcttgacaactgtccaggggctgaagaaagagtacagc 192
Query: 306 tacaacaagatcctcaaggatctcaagaaggaattctgctgcaatggcacagtagtccag 365
|||| |||||| || |||||||||||||| || || || ||||| || || || || ||
Sbjct: 193 tacaccaagatacttaaggatctcaagaaagagttttgttgcaacggaactgtcgttcaa 252
Query: 366 gatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgttgctact 425
|| | || || || ||||| ||||||||||| || || ||| | ||||| || | ||
Sbjct: 253 gactctgaacttggacaggttattcagcttcaaggcgaccagaggaagaacgtctccacg 312
Query: 426 ttcctagtccaggctgggattgcgaagaagga 457
||||| |||||||||||| ||| |||||||||
Sbjct: 313 ttccttgtccaggctgggcttgtgaagaagga 344
Score = 42.1 bits (21), Expect = 2.0
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 163 ctgccttcgatccttttgctgaggcaaatgctgagga 199
|||||||||| || |||||||| || |||||||||||
Sbjct: 56 ctgccttcgacccgtttgctgatgcgaatgctgagga 92
>gb| DQ083223.1 | Oryza sativa (indica cultivar-group) clone 5B12A69 mRNA sequence
Length = 209
Score = 67.9 bits (34), Expect = 3e-08
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 360 gtccaggatcccgagctaggccaggtcattcagcttcagggtgatcagcgtaagaatgtt 419
|||||||| || ||||| |||||||||||||| ||||||||||||||| | ||||| ||
Sbjct: 7 gtccaggacccagagcttggccaggtcattcaacttcagggtgatcagaggaagaacgta 66
Query: 420 gctactttcctagtccaggctgggattgcgaagaaggagctcatcaagat 469
| | ||| || || ||||| || |||| ||||||||| | |||||||||
Sbjct: 67 tcaaattttcttgttcaggccggcattgtgaagaaggaacacatcaagat 116
>gb| AC005287.4 | Arabidopsis thaliana chromosome I BAC F20D21 genomic sequence, complete
sequence
Length = 143186
Score = 65.9 bits (33), Expect = 1e-07
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| ||||| ||||| || |||||||||| ||||| | |||||| || || || || |
Sbjct: 40610 tgacaactgtccaggggcttaagaaagagtatagctatagcaagatacttaaagacctta 40551
Query: 331 agaaggaattctgctgcaatggcacagtagtccagga 367
|||| |||||||||||||||||||| || ||||||||
Sbjct: 40550 agaaagaattctgctgcaatggcaccgtcgtccagga 40514
>gb| AC146555.5 | Medicago truncatula clone mth2-10p14, complete sequence
Length = 127640
Score = 60.0 bits (30), Expect = 8e-06
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 171 gatccttttgctgaggcaaatgctgaggatgctggtgc 208
||||||||||||||||||||||||||||| || |||||
Sbjct: 53484 gatccttttgctgaggcaaatgctgaggacgccggtgc 53521
Score = 54.0 bits (27), Expect = 5e-04
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 291 aagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaattctgctgcaat 350
|||||||| ||||| ||||||||||| || || || || |||||||| || || || |||
Sbjct: 53601 aagaaagaattcagttacaacaagattctgaaagaccttaagaaggagttttgttgtaat 53660
Query: 351 ggcacagtagtccaggatcccgagctaggccaggt 385
|| ||||| |||||||| || |||| ||| |||||
Sbjct: 53661 ggtacagttgtccaggacccagagcaaggacaggt 53695
>gb| AF521961.1 | Helianthus annuus translation initiation factor B04 mRNA, complete
cds
Length = 621
Score = 60.0 bits (30), Expect = 8e-06
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 279 gttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctcaagaaggaa 338
|||||||| || || || ||| |||||||| | || || ||||| ||||||||||| |||
Sbjct: 229 gttcagggtctgaaaaaggagctcagctacgataaaattctcaaagatctcaagaaagaa 288
Query: 339 ttctgctgcaatggcacagtagtccaggat 368
|||||||| |||||||| || || ||||||
Sbjct: 289 ttctgctgtaatggcactgttgtgcaggat 318
>gb| AC123708.17 | Mus musculus chromosome 9, clone RP23-366E1, complete sequence
Length = 195563
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 128487 atccagcagcgcaacggcaggaagacgctgaccactgtgcagggc 128443
>gb| AY550043.1 | Sus scrofa translation factor sui1-like protein mRNA, complete cds
Length = 578
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || ||||||||||||| ||||||||||||||||||
Sbjct: 103 atccagcaacggaacggcaggaagacactgactactgttcagggc 147
>gb| BC033505.1 | Mus musculus eukaryotic translation initiation factor 1B, mRNA
(cDNA clone MGC:36534 IMAGE:4209443), complete cds
Length = 910
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 279 atccagcagcgcaacggcaggaagacgctgaccactgtgcagggc 323
>gb| BC030319.1 | Mus musculus eukaryotic translation initiation factor 1B, mRNA
(cDNA clone MGC:40900 IMAGE:5372299), complete cds
Length = 891
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 177 atccagcagcgcaacggcaggaagacgctgaccactgtgcagggc 221
>ref| NM_026892.1 | Mus musculus eukaryotic translation initiation factor 1B (Eif1b),
mRNA
Length = 885
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 275 atccagcagcgcaacggcaggaagacgctgaccactgtgcagggc 319
>dbj| AK013965.1 | Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched
library, clone:3110001N14 product:ADULT MALE CEREBELLUM
CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY,
CLONE:1500010M16:SIMILAR TO PROTEIN TRANSLATION FACTOR
SUI1 HOMOLOG, FULL INSERT SEQUENCE homolog [Mus
musculus], full insert sequence
Length = 849
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 281 atccagcagcgcaacggcaggaagacgctgaccactgtgcagggc 325
>gb| BC109541.1 | Bos taurus cDNA clone MGC:133836 IMAGE:8057925, complete cds
Length = 976
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || ||||||||||||| ||||||||||||||||||
Sbjct: 364 atccagcaacggaacggcaggaagacactgactactgttcagggc 408
>dbj| AK005192.1 | Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched
library, clone:1500010M16 product:Protein translation
factor SUI1 homolog GC20 homolog [Homo sapiens], full
insert sequence
Length = 885
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 275 atccagcagcgcaacggcaggaagacgctgaccactgtgcagggc 319
>gb| AF267716.1 |AF267716 Sus scrofa translation factor sui1-like protein gene, partial cds
Length = 1155
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || ||||||||||||| ||||||||||||||||||
Sbjct: 1137 atccagcaacggaacggcaggaagacactgactactgttcagggc 1093
>ref| NM_001001635.1 | Sus scrofa translation factor sui1-like protein (LOC414417), mRNA
Length = 578
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || ||||||||||||| ||||||||||||||||||
Sbjct: 103 atccagcaacggaacggcaggaagacactgactactgttcagggc 147
>gb| AY610489.1 | Sus scrofa clone rssp04_e14.y1.abd, mRNA sequence
Length = 664
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || ||||||||||||| ||||||||||||||||||
Sbjct: 222 atccagcaacggaacggcaggaagacactgactactgttcagggc 266
>ref| NM_001037598.1 | Bos taurus similar to translation factor sui1 homolog (MGC133836),
mRNA
Length = 976
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || ||||||||||||| ||||||||||||||||||
Sbjct: 364 atccagcaacggaacggcaggaagacactgactactgttcagggc 408
>ref| NM_180861.1 | Arabidopsis thaliana translation initiation factor AT5G54940
transcript variant AT5G54940.1 mRNA, complete cds
Length = 617
Score = 56.0 bits (28), Expect = 1e-04
Identities = 166/212 (78%)
Strand = Plus / Plus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| |||||||| || || |||||||||| ||||||| | | ||| ||||||||| | |
Sbjct: 298 tgacgactgttcaagggcttaagaaagagtacagctacgagaggattctcaaggatttga 357
Query: 331 agaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattc 390
|||| || ||||||||||| || | || || ||||| || |||||| || |||| |
Sbjct: 358 agaaagatttctgctgcaacggtaacgttgtgcaggacaaagaactaggcaagatcatcc 417
Query: 391 agcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcga 450
||||||| |||||||| | ||||| || || ||| | ||||| |||||||||| |
Sbjct: 418 agcttcaaggtgatcaaaggaagaaagtgtctcagttcttggtccaaactgggattgcta 477
Query: 451 agaaggagctcatcaagatccacggcttctaa 482
||||||| | |||||||||||||| ||||||
Sbjct: 478 agaaggatcagatcaagatccacggtttctaa 509
>ref| NM_124876.3 | Arabidopsis thaliana translation initiation factor AT5G54940
transcript variant AT5G54940.2 mRNA, complete cds
Length = 592
Score = 56.0 bits (28), Expect = 1e-04
Identities = 166/212 (78%)
Strand = Plus / Plus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| |||||||| || || |||||||||| ||||||| | | ||| ||||||||| | |
Sbjct: 232 tgacgactgttcaagggcttaagaaagagtacagctacgagaggattctcaaggatttga 291
Query: 331 agaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattc 390
|||| || ||||||||||| || | || || ||||| || |||||| || |||| |
Sbjct: 292 agaaagatttctgctgcaacggtaacgttgtgcaggacaaagaactaggcaagatcatcc 351
Query: 391 agcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcga 450
||||||| |||||||| | ||||| || || ||| | ||||| |||||||||| |
Sbjct: 352 agcttcaaggtgatcaaaggaagaaagtgtctcagttcttggtccaaactgggattgcta 411
Query: 451 agaaggagctcatcaagatccacggcttctaa 482
||||||| | |||||||||||||| ||||||
Sbjct: 412 agaaggatcagatcaagatccacggtttctaa 443
>gb| AY133677.1 | Arabidopsis thaliana AT5g54940/MBG8_21 mRNA, complete cds
Length = 339
Score = 56.0 bits (28), Expect = 1e-04
Identities = 166/212 (78%)
Strand = Plus / Plus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| |||||||| || || |||||||||| ||||||| | | ||| ||||||||| | |
Sbjct: 128 tgacgactgttcaagggcttaagaaagagtacagctacgagaggattctcaaggatttga 187
Query: 331 agaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattc 390
|||| || ||||||||||| || | || || ||||| || |||||| || |||| |
Sbjct: 188 agaaagatttctgctgcaacggtaacgttgtgcaggacaaagaactaggcaagatcatcc 247
Query: 391 agcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcga 450
||||||| |||||||| | ||||| || || ||| | ||||| |||||||||| |
Sbjct: 248 agcttcaaggtgatcaaaggaagaaagtgtctcagttcttggtccaaactgggattgcta 307
Query: 451 agaaggagctcatcaagatccacggcttctaa 482
||||||| | |||||||||||||| ||||||
Sbjct: 308 agaaggatcagatcaagatccacggtttctaa 339
>gb| AF385736.1 |AF385736 Arabidopsis thaliana AT5g54940/MBG8_21 mRNA, complete cds
Length = 591
Score = 56.0 bits (28), Expect = 1e-04
Identities = 166/212 (78%)
Strand = Plus / Plus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| |||||||| || || |||||||||| ||||||| | | ||| ||||||||| | |
Sbjct: 233 tgacgactgttcaagggcttaagaaagagtacagctacgagaggattctcaaggatttga 292
Query: 331 agaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattc 390
|||| || ||||||||||| || | || || ||||| || |||||| || |||| |
Sbjct: 293 agaaagatttctgctgcaacggtaacgttgtgcaggacaaagaactaggcaagatcatcc 352
Query: 391 agcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcga 450
||||||| |||||||| | ||||| || || ||| | ||||| |||||||||| |
Sbjct: 353 agcttcaaggtgatcaaaggaagaaagtgtctcagttcttggtccaaactgggattgcta 412
Query: 451 agaaggagctcatcaagatccacggcttctaa 482
||||||| | |||||||||||||| ||||||
Sbjct: 413 agaaggatcagatcaagatccacggtttctaa 444
>emb| BX833097.1 |CNS0A21C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL34ZB02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 545
Score = 56.0 bits (28), Expect = 1e-04
Identities = 166/212 (78%)
Strand = Plus / Plus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| |||||||| || || |||||||||| ||||||| | | ||| ||||||||| | |
Sbjct: 184 tgacgactgttcaagggcttaagaaagagtacagctacgagaggattctcaaggatttga 243
Query: 331 agaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattc 390
|||| || ||||||||||| || | || || ||||| || |||||| || |||| |
Sbjct: 244 agaaagatttctgctgcaacggtaacgttgtgcaggacaaagaactaggcaagatcatcc 303
Query: 391 agcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcga 450
||||||| |||||||| | ||||| || || ||| | ||||| |||||||||| |
Sbjct: 304 agcttcaaggtgatcaaaggaagaaagtgtctcagttcttggtccaaactgggattgcta 363
Query: 451 agaaggagctcatcaagatccacggcttctaa 482
||||||| | |||||||||||||| ||||||
Sbjct: 364 agaaggatcagatcaagatccacggtttctaa 395
>emb| BX831257.1 |CNS0A0P2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS72ZC01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 544
Score = 56.0 bits (28), Expect = 1e-04
Identities = 166/212 (78%)
Strand = Plus / Plus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| |||||||| || || |||||||||| ||||||| | | ||| ||||||||| | |
Sbjct: 184 tgacgactgttcaagggcttaagaaagagtacagctacgagaggattctcaaggatttga 243
Query: 331 agaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattc 390
|||| || ||||||||||| || | || || ||||| || |||||| || |||| |
Sbjct: 244 agaaagatttctgctgcaacggtaacgttgtgcaggacaaagaactaggcaagatcatcc 303
Query: 391 agcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcga 450
||||||| |||||||| | ||||| || || ||| | ||||| |||||||||| |
Sbjct: 304 agcttcaaggtgatcaaaggaagaaagtgtctcagttcttggtccaaactgggattgcta 363
Query: 451 agaaggagctcatcaagatccacggcttctaa 482
||||||| | |||||||||||||| ||||||
Sbjct: 364 agaaggatcagatcaagatccacggtttctaa 395
>gb| AY087132.1 | Arabidopsis thaliana clone 32071 mRNA, complete sequence
Length = 585
Score = 56.0 bits (28), Expect = 1e-04
Identities = 166/212 (78%)
Strand = Plus / Plus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| |||||||| || || |||||||||| ||||||| | | ||| ||||||||| | |
Sbjct: 233 tgacgactgttcaagggcttaagaaagagtacagctacgagaggattctcaaggatttga 292
Query: 331 agaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattc 390
|||| || ||||||||||| || | || || ||||| || |||||| || |||| |
Sbjct: 293 agaaagatttctgctgcaacggtaacgttgtgcaggacaaagaactaggcaagatcatcc 352
Query: 391 agcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcga 450
||||||| |||||||| | ||||| || || ||| | ||||| |||||||||| |
Sbjct: 353 agcttcaaggtgatcaaaggaagaaagtgtctcagttcttggtccaaactgggattgcta 412
Query: 451 agaaggagctcatcaagatccacggcttctaa 482
||||||| | |||||||||||||| ||||||
Sbjct: 413 agaaggatcagatcaagatccacggtttctaa 444
>dbj| AB005232.1 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBG8
Length = 80315
Score = 56.0 bits (28), Expect = 1e-04
Identities = 166/212 (78%)
Strand = Plus / Minus
Query: 271 tgactactgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctca 330
|||| |||||||| || || |||||||||| ||||||| | | ||| ||||||||| | |
Sbjct: 67634 tgacgactgttcaagggcttaagaaagagtacagctacgagaggattctcaaggatttga 67575
Query: 331 agaaggaattctgctgcaatggcacagtagtccaggatcccgagctaggccaggtcattc 390
|||| || ||||||||||| || | || || ||||| || |||||| || |||| |
Sbjct: 67574 agaaagatttctgctgcaacggtaacgttgtgcaggacaaagaactaggcaagatcatcc 67515
Query: 391 agcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctgggattgcga 450
||||||| |||||||| | ||||| || || ||| | ||||| |||||||||| |
Sbjct: 67514 agcttcaaggtgatcaaaggaagaaagtgtctcagttcttggtccaaactgggattgcta 67455
Query: 451 agaaggagctcatcaagatccacggcttctaa 482
||||||| | |||||||||||||| ||||||
Sbjct: 67454 agaaggatcagatcaagatccacggtttctaa 67423
>gb| AF091857.1 |AF091857 Pimpinella brachycarpa protein translation factor SUI1 homolog
mRNA, complete cds
Length = 533
Score = 56.0 bits (28), Expect = 1e-04
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 382 aggtcattcagcttcagggtgatcagcgtaagaatgttgctactttcctagtccaggctg 441
|||||||||| ||||| || |||||||| ||||| || | |||||| | ||||||||||
Sbjct: 289 aggtcattcaacttcaaggcgatcagcgcaagaacgtctccactttcattgtccaggctg 348
Query: 442 ggattgcgaagaagga 457
|||||| ||||||||
Sbjct: 349 ggattgtcaagaagga 364
>gb| AY617076.1 | Bassia scoparia putative translation initiation factor mRNA,
partial cds
Length = 207
Score = 54.0 bits (27), Expect = 5e-04
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 276 actgttcagggcctaaagaaagagttcagctacaacaagatcctcaaggatctcaagaag 335
|||||||| || || ||||| || ||||||||| | ||||| ||||| || ||||| |||
Sbjct: 1 actgttcaaggtctgaagaaggatttcagctacgagaagatactcaaagacctcaaaaag 60
Query: 336 gaattctgctgcaatggca 354
|| ||||||||||| ||||
Sbjct: 61 gagttctgctgcaacggca 79
>gb| BC088954.1 | Xenopus laevis cDNA clone MGC:85057 IMAGE:6327089, complete cds
Length = 4170
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||||||| | ||||||||||||| ||| |||||||| ||||||
Sbjct: 2942 atccagcagaggaacggcaggaagactctcactactgtacagggc 2986
>gb| DQ215825.1 | Taeniopygia guttata clone 0065P0009C06 eukaryotic translation
initiation factor 1 variant 3-like mRNA, complete
sequence
Length = 645
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
|||||||||||||||||||||||||
Sbjct: 220 atccagcagcgcaacggcaggaaga 244
>gb| DQ215824.1 | Taeniopygia guttata clone 0061P0020D08 eukaryotic translation
initiation factor 1 variant 3-like mRNA, complete
sequence
Length = 649
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
|||||||||||||||||||||||||
Sbjct: 221 atccagcagcgcaacggcaggaaga 245
>gb| DQ215823.1 | Taeniopygia guttata clone 0058P0020F02 eukaryotic translation
initiation factor 1 variant 3-like mRNA, complete
sequence
Length = 649
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
|||||||||||||||||||||||||
Sbjct: 220 atccagcagcgcaacggcaggaaga 244
>gb| DQ215822.1 | Taeniopygia guttata clone 0058P0015F08 eukaryotic translation
initiation factor 1 variant 3-like mRNA, complete
sequence
Length = 645
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
|||||||||||||||||||||||||
Sbjct: 220 atccagcagcgcaacggcaggaaga 244
>gb| DQ215821.1 | Taeniopygia guttata clone 0058P0003H09 eukaryotic translation
initiation factor 1 variant 3-like mRNA, complete
sequence
Length = 650
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
|||||||||||||||||||||||||
Sbjct: 220 atccagcagcgcaacggcaggaaga 244
>gb| DQ215820.1 | Taeniopygia guttata clone 0063P0027C07 eukaryotic translation
initiation factor 1 variant 3-like mRNA, complete
sequence
Length = 645
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
|||||||||||||||||||||||||
Sbjct: 220 atccagcagcgcaacggcaggaaga 244
>gb| DQ215819.1 | Taeniopygia guttata clone 0065P0015F12 eukaryotic translation
initiation factor 1 variant 3-like mRNA, complete
sequence
Length = 650
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
|||||||||||||||||||||||||
Sbjct: 220 atccagcagcgcaacggcaggaaga 244
>gb| DQ215818.1 | Taeniopygia guttata clone 0058P0009H05 eukaryotic translation
initiation factor 1 variant 3-like mRNA, complete
sequence
Length = 504
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
|||||||||||||||||||||||||
Sbjct: 75 atccagcagcgcaacggcaggaaga 99
>gb| DQ215817.1 | Taeniopygia guttata clone 0058P0003G09 eukaryotic translation
initiation factor 1 variant 3-like mRNA, complete
sequence
Length = 650
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
|||||||||||||||||||||||||
Sbjct: 220 atccagcagcgcaacggcaggaaga 244
>gb| DQ215816.1 | Taeniopygia guttata clone 0058P0060A05 eukaryotic translation
initiation factor 1 variant 2-like mRNA, complete
sequence
Length = 1127
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
|||||||||||||||||||||||||
Sbjct: 185 atccagcagcgcaacggcaggaaga 209
>gb| DQ215815.1 | Taeniopygia guttata clone 0061P0014G02 eukaryotic translation
initiation factor 1 variant 1-like mRNA, complete
sequence
Length = 954
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
|||||||||||||||||||||||||
Sbjct: 529 atccagcagcgcaacggcaggaaga 553
>ref| XM_516381.1 | PREDICTED: Pan troglodytes similar to translation factor sui1
homolog (LOC460285), mRNA
Length = 599
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 360 atccagcaacggaacggcagaaagacactgactactgttcagggc 404
>gb| BC059790.1 | Xenopus laevis hypothetical protein MGC68655, mRNA (cDNA clone
MGC:68655 IMAGE:4032709), complete cds
Length = 1007
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||||||| | ||||||||||||| ||| |||||||| ||||||
Sbjct: 187 atccagcagaggaacggcaggaagactctcactactgtacagggc 231
>ref| NM_005875.2 | Homo sapiens eukaryotic translation initiation factor 1B (EIF1B),
mRNA
Length = 1014
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 363 atccagcaacggaacggcagaaagacactgactactgttcagggc 407
>gb| BC006996.1 | Homo sapiens eukaryotic translation initiation factor 1B, mRNA
(cDNA clone MGC:12271 IMAGE:4044439), complete cds
Length = 1023
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 347 atccagcaacggaacggcagaaagacactgactactgttcagggc 391
>gb| AC104186.2 | Homo sapiens chromosome 3 clone RP11-391M1, complete sequence
Length = 186317
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 20511 atccagcaacggaacggcagaaagacactgactactgttcagggc 20555
>emb| CR610118.1 | full-length cDNA clone CS0DI083YG09 of Placenta Cot 25-normalized
of Homo sapiens (human)
Length = 869
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 241 atccagcaacggaacggcagaaagacactgactactgttcagggc 285
>emb| CR601510.1 | full-length cDNA clone CS0DI009YF18 of Placenta Cot 25-normalized
of Homo sapiens (human)
Length = 706
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 160 atccagcaacggaacggcagaaagacactgactactgttcagggc 204
>emb| CR600400.1 | full-length cDNA clone CS0DN002YE04 of Adult brain of Homo sapiens
(human)
Length = 790
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 162 atccagcaacggaacggcagaaagacactgactactgttcagggc 206
>emb| CR542223.1 | Homo sapiens full open reading frame cDNA clone RZPDo834C1025D for
gene GC20, translation factor sui1 homolog; complete
cds, without stopcodon
Length = 339
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 103 atccagcaacggaacggcagaaagacactgactactgttcagggc 147
>dbj| AB169765.1 | Macaca fascicularis brain cDNA, clone: QtrA-11743, similar to human
translation factor sui1 homolog (GC20), mRNA, RefSeq:
NM_005875.1
Length = 1019
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 363 atccagcaacggaacggcagaaagacactgactactgttcagggc 407
>dbj| AK223448.1 | Homo sapiens mRNA for translation factor sui1 homolog, clone:
FCC113D06
Length = 929
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 358 atccagcaacggaacggcagaaagacactgactactgttcagggc 402
>ref| XM_217294.3 | PREDICTED: Rattus norvegicus similar to translation factor sui1
homolog (predicted) (LOC301068), mRNA
Length = 1005
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||||||||| ||||||||||||| ||||| ||||| ||||||
Sbjct: 377 atccagcagcggaacggcaggaagacgctgaccactgtgcagggc 421
>gb| AF263452.1 |AF263452 Homo sapiens translational factor eIF-1 mRNA, complete cds
Length = 945
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 336 atccagcaacggaacggcagaaagacactgactactgttcagggc 380
>gb| AF077052.1 | Homo sapiens protein translation factor sui1 homolog mRNA, complete
cds
Length = 992
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 344 atccagcaacggaacggcagaaagacactgactactgttcagggc 388
>gb| AY894036.1 | Synthetic construct Homo sapiens clone FLH131152.01L translation
factor sui1-like (GC20) mRNA, partial cds
Length = 342
Score = 50.1 bits (25), Expect = 0.008
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 103 atccagcaacggaacggcagaaagacactgactactgttcagggc 147
>gb| M96818.1 |EUPTBPA Euplotes crassus macronuclear 51 kDa telomere-binding protein gene,
complete cds
Length = 1634
Score = 48.1 bits (24), Expect = 0.032
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 312 aagatcctcaaggatctcaagaag 335
||||||||||||||||||||||||
Sbjct: 676 aagatcctcaaggatctcaagaag 699
>gb| AC136520.3 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017O06,
complete sequence
Length = 151656
Score = 46.1 bits (23), Expect = 0.13
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 382 aggtcattcagcttcagggtgatcagcgtaagaatgttg 420
|||||||||||||| | || |||||| ||||||||||||
Sbjct: 111839 aggtcattcagctttaaggcgatcagtgtaagaatgttg 111877
Score = 46.1 bits (23), Expect = 0.13
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 224 agattatgtgcatgtgcgcatccagca 250
|||||||||||||||| ||||||||||
Sbjct: 111620 agattatgtgcatgtgtgcatccagca 111646
>ref| XM_421398.1 | PREDICTED: Gallus gallus similar to mKIAA0284 protein (LOC423494),
mRNA
Length = 6033
Score = 44.1 bits (22), Expect = 0.50
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 383 ggtcattcagcttcagggtgat 404
||||||||||||||||||||||
Sbjct: 1408 ggtcattcagcttcagggtgat 1387
>gb| BT009033.1 | Triticum aestivum clone wdk4c.pk005.f24:fis, full insert mRNA
sequence
Length = 3257
Score = 44.1 bits (22), Expect = 0.50
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 316 tcctcaaggatctcaagaagga 337
||||||||||||||||||||||
Sbjct: 541 tcctcaaggatctcaagaagga 562
>dbj| AP005104.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0042E08
Length = 166257
Score = 44.1 bits (22), Expect = 0.50
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 382 aggtcattcagcttcagggtgatcagcgtaagaatgtt 419
||||||||||| |||| |||||||| ||||| ||||||
Sbjct: 27585 aggtcattcagattcaaggtgatcaacgtaaaaatgtt 27622
>dbj| AK101048.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033009H10, full
insert sequence
Length = 2452
Score = 44.1 bits (22), Expect = 0.50
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 382 aggtcattcagcttcagggtgatcagcgtaagaatgtt 419
||||||||||| |||| |||||||| ||||| ||||||
Sbjct: 2343 aggtcattcagattcaaggtgatcaacgtaaaaatgtt 2380
>ref| XM_640867.1 | Dictyostelium discoideum hypothetical protein (DDB0216653), partial
mRNA
Length = 2892
Score = 42.1 bits (21), Expect = 2.0
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 ataaagaagaacaagagaaac 91
|||||||||||||||||||||
Sbjct: 962 ataaagaagaacaagagaaac 982
>gb| AC134045.2 | Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0022E16 map C481S, complete sequence
Length = 179668
Score = 42.1 bits (21), Expect = 2.0
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 178 ttgctgaggcaaatgctgagg 198
|||||||||||||||||||||
Sbjct: 38737 ttgctgaggcaaatgctgagg 38757
>ref| XM_418159.1 | PREDICTED: Gallus gallus similar to Eukaryotic translation
initiation factor 1 (eIF1) (Protein translation factor
SUI1 homolog) (Sui1iso1) (LOC420037), mRNA
Length = 1823
Score = 42.1 bits (21), Expect = 2.0
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
||||||||||| |||||||||||||
Sbjct: 859 atccagcagcggaacggcaggaaga 883
>ref| XM_534229.2 | PREDICTED: Canis familiaris similar to translation factor sui1
homolog (LOC477030), mRNA
Length = 1027
Score = 42.1 bits (21), Expect = 2.0
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||||| |||| ||||||||||| ||||||
Sbjct: 375 atccagcaacggaacggcagaaagacactgactactgtccagggc 419
>gb| DQ363457.1 | Ictalurus punctatus clone C139CH01 translation factor sui1-like
mRNA, complete cds
Length = 685
Score = 42.1 bits (21), Expect = 2.0
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
||||||||| | ||||||||||||| |||||| || || ||||||
Sbjct: 211 atccagcagaggaacggcaggaagactctgaccacagtgcagggc 255
>dbj| AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 42.1 bits (21), Expect = 2.0
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 178 ttgctgaggcaaatgctgagg 198
|||||||||||||||||||||
Sbjct: 28079604 ttgctgaggcaaatgctgagg 28079624
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 178 ttgctgaggcaaatgctgag 197
||||||||||||||||||||
Sbjct: 21437476 ttgctgaggcaaatgctgag 21437457
>gb| DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 42.1 bits (21), Expect = 2.0
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 178 ttgctgaggcaaatgctgagg 198
|||||||||||||||||||||
Sbjct: 28064482 ttgctgaggcaaatgctgagg 28064502
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 178 ttgctgaggcaaatgctgag 197
||||||||||||||||||||
Sbjct: 21747675 ttgctgaggcaaatgctgag 21747656
>gb| AF064607.1 |AF064607 Homo sapiens GC20 protein mRNA, complete cds
Length = 812
Score = 42.1 bits (21), Expect = 2.0
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaagagtctgactactgttcagggc 287
|||||||| || |||||| | |||| ||||||||||||||||||
Sbjct: 173 atccagcaacggaacggcggaaagacactgactactgttcagggc 217
>gb| U25125.1 |GGU25125 Gallus gallus preprogastrin gene, complete cds
Length = 6418
Score = 42.1 bits (21), Expect = 2.0
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 243 atccagcagcgcaacggcaggaaga 267
||||||||||| |||||||||||||
Sbjct: 3 atccagcagcggaacggcaggaaga 27
>gb| AC005361.1 | Homo sapiens chromosome 16, cosmid clone 352F10 (LANL), complete
sequence
Length = 35677
Score = 40.1 bits (20), Expect = 7.8
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 384 gtcattcagcttcagggtgatcagcgtaagaa 415
||||||||||| |||||||| ||||| |||||
Sbjct: 16957 gtcattcagctacagggtgaccagcgcaagaa 16988
>ref| XM_420777.1 | PREDICTED: Gallus gallus similar to RIKEN cDNA 5730509K17 gene
(LOC422830), mRNA
Length = 5475
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 gcctcgcaccgcgtcccctc 30
||||||||||||||||||||
Sbjct: 730 gcctcgcaccgcgtcccctc 711
>gb| CP000352.1 | Ralstonia metallidurans CH34, complete genome
Length = 3928089
Score = 40.1 bits (20), Expect = 7.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 239 gcgcatccagcagcgcaacggcag 262
|||||||||||||||| |||||||
Sbjct: 2172289 gcgcatccagcagcgccacggcag 2172266
>gb| AY391839.1 | Pseudomonas savastanoi pv. glycinea plasmid p4180A CmaD, CmaE, CmaA,
CmaB, CmaC, CmaT, alanyl tRNA synthetase related protein,
and CmaU genes, complete cds
Length = 6497
Score = 40.1 bits (20), Expect = 7.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 46 gcgctccaccagcaaaagcttcca 69
||||| ||||||||||||||||||
Sbjct: 4873 gcgctacaccagcaaaagcttcca 4896
>gb| AC136148.2 | Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBa0029K08, complete sequence
Length = 136687
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 178 ttgctgaggcaaatgctgag 197
||||||||||||||||||||
Sbjct: 95226 ttgctgaggcaaatgctgag 95207
>emb| AL049594.4 |HSDJ860P4 Human DNA sequence from clone RP5-860P4 on chromosome 20 Contains the 3'
end of the C20orf39 gene for chromosome 20 open reading
frame 39, a novel gene and a CpG island, complete sequence
Length = 156791
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 191 tgctgaggatgctggtgcag 210
||||||||||||||||||||
Sbjct: 124988 tgctgaggatgctggtgcag 124969
>gb| CP000142.2 | Pelobacter carbinolicus DSM 2380, complete genome
Length = 3665893
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 485 caaggccaccgccaccaccg 504
||||||||||||||||||||
Sbjct: 2000243 caaggccaccgccaccaccg 2000262
>emb| AL161592.2 |ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88
Length = 198493
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 ataaagaagaacaagagaaa 90
||||||||||||||||||||
Sbjct: 117580 ataaagaagaacaagagaaa 117599
>emb| AL035538.1 |ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA
project)
Length = 147215
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 ataaagaagaacaagagaaa 90
||||||||||||||||||||
Sbjct: 3165 ataaagaagaacaagagaaa 3184
>gb| AC015844.12 | Homo sapiens chromosome 17, clone RP11-283E7, complete sequence
Length = 172478
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 412 agaatgttgctactttccta 431
||||||||||||||||||||
Sbjct: 3065 agaatgttgctactttccta 3046
>gb| AE017340.1 | Idiomarina loihiensis L2TR, complete genome
Length = 2839318
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 293 gaaagagttcagctacaaca 312
||||||||||||||||||||
Sbjct: 2038163 gaaagagttcagctacaaca 2038144
>emb| CR407335.1 | Gallus gallus finished cDNA, clone ChEST108a2
Length = 1025
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 gagaaaccttgatctgttgg 104
||||||||||||||||||||
Sbjct: 651 gagaaaccttgatctgttgg 670
>gb| AC093101.1 | Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone
BACR06I01, complete sequence
Length = 175167
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 106 tgccagtcaaacctcaacaa 125
||||||||||||||||||||
Sbjct: 127504 tgccagtcaaacctcaacaa 127523
>gb| AF544214.1 | Pseudomonas syringae pv. actinidiae CmaT (cmaT) and CmaU (cmaU)
genes, complete cds
Length = 2318
Score = 40.1 bits (20), Expect = 7.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 46 gcgctccaccagcaaaagcttcca 69
||||| ||||||||||||||||||
Sbjct: 633 gcgctacaccagcaaaagcttcca 656
>gb| DQ163916.1 | Bacteriophage M6, complete genome
Length = 59446
Score = 40.1 bits (20), Expect = 7.8
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 239 gcgcatccagcagcgcaacggcaggaag 266
|||||||||| ||||||||||| |||||
Sbjct: 42074 gcgcatccaggagcgcaacggcgggaag 42101
>gb| BC041506.1 | Xenopus laevis suppressor of initiator codon mutations, related
sequence 1 (S. cerevisiae), mRNA (cDNA clone MGC:52987
IMAGE:4930819), complete cds
Length = 977
Score = 40.1 bits (20), Expect = 7.8
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 382 aggtcattcagcttcagggtgatcagcg 409
|||| |||||||||||||| ||||||||
Sbjct: 339 aggtgattcagcttcagggagatcagcg 366
>gb| AE003646.3 | Drosophila melanogaster chromosome 2L, section 55 of 83 of the complete
sequence
Length = 265413
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 106 tgccagtcaaacctcaacaa 125
||||||||||||||||||||
Sbjct: 172557 tgccagtcaaacctcaacaa 172576
>dbj| AP002500.4 | Homo sapiens genomic DNA, chromosome 11q clone:CTD-2240G15, complete
sequences
Length = 49000
Score = 40.1 bits (20), Expect = 7.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 177 tttgctgaggcaaatgctgaggat 200
|||||||| |||||||||||||||
Sbjct: 27398 tttgctgaagcaaatgctgaggat 27421
>gb| AC005922.1 |AC005922 Homo sapiens chromosome 17, clone hRPK.235_I_10, complete sequence
Length = 140677
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 412 agaatgttgctactttccta 431
||||||||||||||||||||
Sbjct: 138523 agaatgttgctactttccta 138504
>dbj| AK114444.1 | Ciona intestinalis cDNA, clone:cieg002h13, full insert sequence
Length = 3409
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 tccttttgctgaggcaaatg 192
||||||||||||||||||||
Sbjct: 560 tccttttgctgaggcaaatg 579
>gb| U14657.1 |PSU14657 Pseudomonas syringae amino acid-adenylating enzyme (cmaA), CmaB
(cmaB), thioesterase (cmaT), and CmaU (cmaU) genes,
complete cds; and transposase-like protein (tnp) gene,
partial cds
Length = 6950
Score = 40.1 bits (20), Expect = 7.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 46 gcgctccaccagcaaaagcttcca 69
||||| ||||||||||||||||||
Sbjct: 5078 gcgctacaccagcaaaagcttcca 5101
>gb| U78042.1 |BTU78042 Bos taurus hormone sensitive lipase (bHSL) mRNA, partial cds
Length = 429
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 380 ccaggtcattcagcttcagg 399
||||||||||||||||||||
Sbjct: 67 ccaggtcattcagcttcagg 48
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,341,314
Number of Sequences: 3902068
Number of extensions: 5341314
Number of successful extensions: 121080
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120317
Number of HSP's gapped (non-prelim): 753
length of query: 573
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 550
effective length of database: 17,143,297,704
effective search space: 9428813737200
effective search space used: 9428813737200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)