ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3c19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
2dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
3dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 5e-35
4dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 5e-35
5emb|AL080273.10|HSBA259P1 Human DNA sequence from clone RP11-259... 42 1.8
6gb|AC012301.5|AC012301 Homo sapiens chromosome 18, clone RP11-38... 42 1.8
7ref|XM_454508.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E12419g ... 40 7.3
8ref|XM_384504.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 7.3
9emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 7.3
10gb|CP000183.1| Drosophila melanogaster genomic scaffold 21100002... 40 7.3
11dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 7.3

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  157 bits (79), Expect = 5e-35
 Identities = 184/219 (84%)
 Strand = Plus / Minus

                                                                            
Query: 115      gcagatgcttgagtgcacagctactgatttggcgcttgaggacaccatctacgcgctcga 174
                |||||||||||||||||| ||| | |||||||| || ||||||||||| || ||||| ||
Sbjct: 35855771 gcagatgcttgagtgcactgctgcggatttggcactcgaggacaccatttatgcgcttga 35855712

                                                                            
Query: 175      caaggctgtccaggaaggatcggtgcccttcgacggctacctcaggagcgtgcgtgcact 234
                ||||||  | ||||| || || ||||| || || |||||||||||||||||||| || ||
Sbjct: 35855711 caaggccattcaggagggttctgtgccatttgatggctacctcaggagcgtgcgagcgct 35855652

                                                                            
Query: 235      cgcacgggagcagttcttccagcgtgtcctctgcaccaaggtcaacaatgcacagcagca 294
                 |||||||||||||| ||||| || ||||| |  |||||||| ||||| ||||| || ||
Sbjct: 35855651 tgcacgggagcagtttttccaacgcgtcctgtcaaccaaggtgaacaaggcacaacaaca 35855592

                                                       
Query: 295      ggcgcaggttgctaggatggcctcacgggcaccacagta 333
                ||| ||||||||||| |||||  | ||||||||||||||
Sbjct: 35855591 ggctcaggttgctagaatggctgctcgggcaccacagta 35855553



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>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_E10
          Length = 107284

 Score =  157 bits (79), Expect = 5e-35
 Identities = 184/219 (84%)
 Strand = Plus / Minus

                                                                         
Query: 115   gcagatgcttgagtgcacagctactgatttggcgcttgaggacaccatctacgcgctcga 174
             |||||||||||||||||| ||| | |||||||| || ||||||||||| || ||||| ||
Sbjct: 46317 gcagatgcttgagtgcactgctgcggatttggcactcgaggacaccatttatgcgcttga 46258

                                                                         
Query: 175   caaggctgtccaggaaggatcggtgcccttcgacggctacctcaggagcgtgcgtgcact 234
             ||||||  | ||||| || || ||||| || || |||||||||||||||||||| || ||
Sbjct: 46257 caaggccattcaggagggttctgtgccatttgatggctacctcaggagcgtgcgagcgct 46198

                                                                         
Query: 235   cgcacgggagcagttcttccagcgtgtcctctgcaccaaggtcaacaatgcacagcagca 294
              |||||||||||||| ||||| || ||||| |  |||||||| ||||| ||||| || ||
Sbjct: 46197 tgcacgggagcagtttttccaacgcgtcctgtcaaccaaggtgaacaaggcacaacaaca 46138

                                                    
Query: 295   ggcgcaggttgctaggatggcctcacgggcaccacagta 333
             ||| ||||||||||| |||||  | ||||||||||||||
Sbjct: 46137 ggctcaggttgctagaatggctgctcgggcaccacagta 46099



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>dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116E04, full
            insert sequence
          Length = 1547

 Score =  157 bits (79), Expect = 5e-35
 Identities = 184/219 (84%)
 Strand = Plus / Plus

                                                                        
Query: 115  gcagatgcttgagtgcacagctactgatttggcgcttgaggacaccatctacgcgctcga 174
            |||||||||||||||||| ||| | |||||||| || ||||||||||| || ||||| ||
Sbjct: 1074 gcagatgcttgagtgcactgctgcggatttggcactcgaggacaccatttatgcgcttga 1133

                                                                        
Query: 175  caaggctgtccaggaaggatcggtgcccttcgacggctacctcaggagcgtgcgtgcact 234
            ||||||  | ||||| || || ||||| || || |||||||||||||||||||| || ||
Sbjct: 1134 caaggccattcaggagggttctgtgccatttgatggctacctcaggagcgtgcgagcgct 1193

                                                                        
Query: 235  cgcacgggagcagttcttccagcgtgtcctctgcaccaaggtcaacaatgcacagcagca 294
             |||||||||||||| ||||| || ||||| |  |||||||| ||||| ||||| || ||
Sbjct: 1194 tgcacgggagcagtttttccaacgcgtcctgtcaaccaaggtgaacaaggcacaacaaca 1253

                                                   
Query: 295  ggcgcaggttgctaggatggcctcacgggcaccacagta 333
            ||| ||||||||||| |||||  | ||||||||||||||
Sbjct: 1254 ggctcaggttgctagaatggctgctcgggcaccacagta 1292



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>dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009E01, full
            insert sequence
          Length = 1562

 Score =  157 bits (79), Expect = 5e-35
 Identities = 184/219 (84%)
 Strand = Plus / Plus

                                                                        
Query: 115  gcagatgcttgagtgcacagctactgatttggcgcttgaggacaccatctacgcgctcga 174
            |||||||||||||||||| ||| | |||||||| || ||||||||||| || ||||| ||
Sbjct: 1089 gcagatgcttgagtgcactgctgcggatttggcactcgaggacaccatttatgcgcttga 1148

                                                                        
Query: 175  caaggctgtccaggaaggatcggtgcccttcgacggctacctcaggagcgtgcgtgcact 234
            ||||||  | ||||| || || ||||| || || |||||||||||||||||||| || ||
Sbjct: 1149 caaggccattcaggagggttctgtgccatttgatggctacctcaggagcgtgcgagcgct 1208

                                                                        
Query: 235  cgcacgggagcagttcttccagcgtgtcctctgcaccaaggtcaacaatgcacagcagca 294
             |||||||||||||| ||||| || ||||| |  |||||||| ||||| ||||| || ||
Sbjct: 1209 tgcacgggagcagtttttccaacgcgtcctgtcaaccaaggtgaacaaggcacaacaaca 1268

                                                   
Query: 295  ggcgcaggttgctaggatggcctcacgggcaccacagta 333
            ||| ||||||||||| |||||  | ||||||||||||||
Sbjct: 1269 ggctcaggttgctagaatggctgctcgggcaccacagta 1307



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>emb|AL080273.10|HSBA259P1 Human DNA sequence from clone RP11-259P1 on chromosome 22 Contains
             STSs, GSSs, genomic markers D22S1154, D22S310 and D22S690
             and a gt repeat polymorphism, complete sequence
          Length = 48084

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 280   caatgcacagcagcaggcgca 300
             |||||||||||||||||||||
Sbjct: 15086 caatgcacagcagcaggcgca 15106



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>gb|AC012301.5|AC012301 Homo sapiens chromosome 18, clone RP11-383D22, complete sequence
          Length = 211466

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 416   agtgtaaagttggttcccatt 436
             |||||||||||||||||||||
Sbjct: 62309 agtgtaaagttggttcccatt 62329



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>ref|XM_454508.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E12419g predicted mRNA
          Length = 897

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 57  ctggtgacgacactgccgag 76
           ||||||||||||||||||||
Sbjct: 263 ctggtgacgacactgccgag 282



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>ref|XM_384504.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04328.1)
            partial mRNA
          Length = 3987

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 463  aagaactctattagctgggg 482
            ||||||||||||||||||||
Sbjct: 1351 aagaactctattagctgggg 1370



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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      ctggtgacgacactgccgag 76
               ||||||||||||||||||||
Sbjct: 1096090 ctggtgacgacactgccgag 1096109



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>gb|CP000183.1| Drosophila melanogaster genomic scaffold 211000022280458
          Length = 100390

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   cacagcagcaggcgcaggtt 304
             ||||||||||||||||||||
Sbjct: 52663 cacagcagcaggcgcaggtt 52682



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   cacagcagcaggcgcaggtt 304
             ||||||||||||||||||||
Sbjct: 50667 cacagcagcaggcgcaggtt 50686



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>dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-172F10, complete
              sequence
          Length = 164943

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    tgtaaagttggttcccattg 437
              ||||||||||||||||||||
Sbjct: 148233 tgtaaagttggttcccattg 148214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,630,940
Number of Sequences: 3902068
Number of extensions: 3630940
Number of successful extensions: 66647
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66629
Number of HSP's gapped (non-prelim): 18
length of query: 537
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 514
effective length of database: 17,143,297,704
effective search space: 8811655019856
effective search space used: 8811655019856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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