Clone Name | basd3c19 |
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Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 157 bits (79), Expect = 5e-35 Identities = 184/219 (84%) Strand = Plus / Minus Query: 115 gcagatgcttgagtgcacagctactgatttggcgcttgaggacaccatctacgcgctcga 174 |||||||||||||||||| ||| | |||||||| || ||||||||||| || ||||| || Sbjct: 35855771 gcagatgcttgagtgcactgctgcggatttggcactcgaggacaccatttatgcgcttga 35855712 Query: 175 caaggctgtccaggaaggatcggtgcccttcgacggctacctcaggagcgtgcgtgcact 234 |||||| | ||||| || || ||||| || || |||||||||||||||||||| || || Sbjct: 35855711 caaggccattcaggagggttctgtgccatttgatggctacctcaggagcgtgcgagcgct 35855652 Query: 235 cgcacgggagcagttcttccagcgtgtcctctgcaccaaggtcaacaatgcacagcagca 294 |||||||||||||| ||||| || ||||| | |||||||| ||||| ||||| || || Sbjct: 35855651 tgcacgggagcagtttttccaacgcgtcctgtcaaccaaggtgaacaaggcacaacaaca 35855592 Query: 295 ggcgcaggttgctaggatggcctcacgggcaccacagta 333 ||| ||||||||||| ||||| | |||||||||||||| Sbjct: 35855591 ggctcaggttgctagaatggctgctcgggcaccacagta 35855553
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1282_E10 Length = 107284 Score = 157 bits (79), Expect = 5e-35 Identities = 184/219 (84%) Strand = Plus / Minus Query: 115 gcagatgcttgagtgcacagctactgatttggcgcttgaggacaccatctacgcgctcga 174 |||||||||||||||||| ||| | |||||||| || ||||||||||| || ||||| || Sbjct: 46317 gcagatgcttgagtgcactgctgcggatttggcactcgaggacaccatttatgcgcttga 46258 Query: 175 caaggctgtccaggaaggatcggtgcccttcgacggctacctcaggagcgtgcgtgcact 234 |||||| | ||||| || || ||||| || || |||||||||||||||||||| || || Sbjct: 46257 caaggccattcaggagggttctgtgccatttgatggctacctcaggagcgtgcgagcgct 46198 Query: 235 cgcacgggagcagttcttccagcgtgtcctctgcaccaaggtcaacaatgcacagcagca 294 |||||||||||||| ||||| || ||||| | |||||||| ||||| ||||| || || Sbjct: 46197 tgcacgggagcagtttttccaacgcgtcctgtcaaccaaggtgaacaaggcacaacaaca 46138 Query: 295 ggcgcaggttgctaggatggcctcacgggcaccacagta 333 ||| ||||||||||| ||||| | |||||||||||||| Sbjct: 46137 ggctcaggttgctagaatggctgctcgggcaccacagta 46099
>dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116E04, full insert sequence Length = 1547 Score = 157 bits (79), Expect = 5e-35 Identities = 184/219 (84%) Strand = Plus / Plus Query: 115 gcagatgcttgagtgcacagctactgatttggcgcttgaggacaccatctacgcgctcga 174 |||||||||||||||||| ||| | |||||||| || ||||||||||| || ||||| || Sbjct: 1074 gcagatgcttgagtgcactgctgcggatttggcactcgaggacaccatttatgcgcttga 1133 Query: 175 caaggctgtccaggaaggatcggtgcccttcgacggctacctcaggagcgtgcgtgcact 234 |||||| | ||||| || || ||||| || || |||||||||||||||||||| || || Sbjct: 1134 caaggccattcaggagggttctgtgccatttgatggctacctcaggagcgtgcgagcgct 1193 Query: 235 cgcacgggagcagttcttccagcgtgtcctctgcaccaaggtcaacaatgcacagcagca 294 |||||||||||||| ||||| || ||||| | |||||||| ||||| ||||| || || Sbjct: 1194 tgcacgggagcagtttttccaacgcgtcctgtcaaccaaggtgaacaaggcacaacaaca 1253 Query: 295 ggcgcaggttgctaggatggcctcacgggcaccacagta 333 ||| ||||||||||| ||||| | |||||||||||||| Sbjct: 1254 ggctcaggttgctagaatggctgctcgggcaccacagta 1292
>dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009E01, full insert sequence Length = 1562 Score = 157 bits (79), Expect = 5e-35 Identities = 184/219 (84%) Strand = Plus / Plus Query: 115 gcagatgcttgagtgcacagctactgatttggcgcttgaggacaccatctacgcgctcga 174 |||||||||||||||||| ||| | |||||||| || ||||||||||| || ||||| || Sbjct: 1089 gcagatgcttgagtgcactgctgcggatttggcactcgaggacaccatttatgcgcttga 1148 Query: 175 caaggctgtccaggaaggatcggtgcccttcgacggctacctcaggagcgtgcgtgcact 234 |||||| | ||||| || || ||||| || || |||||||||||||||||||| || || Sbjct: 1149 caaggccattcaggagggttctgtgccatttgatggctacctcaggagcgtgcgagcgct 1208 Query: 235 cgcacgggagcagttcttccagcgtgtcctctgcaccaaggtcaacaatgcacagcagca 294 |||||||||||||| ||||| || ||||| | |||||||| ||||| ||||| || || Sbjct: 1209 tgcacgggagcagtttttccaacgcgtcctgtcaaccaaggtgaacaaggcacaacaaca 1268 Query: 295 ggcgcaggttgctaggatggcctcacgggcaccacagta 333 ||| ||||||||||| ||||| | |||||||||||||| Sbjct: 1269 ggctcaggttgctagaatggctgctcgggcaccacagta 1307
>emb|AL080273.10|HSBA259P1 Human DNA sequence from clone RP11-259P1 on chromosome 22 Contains STSs, GSSs, genomic markers D22S1154, D22S310 and D22S690 and a gt repeat polymorphism, complete sequence Length = 48084 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 caatgcacagcagcaggcgca 300 ||||||||||||||||||||| Sbjct: 15086 caatgcacagcagcaggcgca 15106
>gb|AC012301.5|AC012301 Homo sapiens chromosome 18, clone RP11-383D22, complete sequence Length = 211466 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 agtgtaaagttggttcccatt 436 ||||||||||||||||||||| Sbjct: 62309 agtgtaaagttggttcccatt 62329
>ref|XM_454508.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E12419g predicted mRNA Length = 897 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ctggtgacgacactgccgag 76 |||||||||||||||||||| Sbjct: 263 ctggtgacgacactgccgag 282
>ref|XM_384504.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04328.1) partial mRNA Length = 3987 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 aagaactctattagctgggg 482 |||||||||||||||||||| Sbjct: 1351 aagaactctattagctgggg 1370
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ctggtgacgacactgccgag 76 |||||||||||||||||||| Sbjct: 1096090 ctggtgacgacactgccgag 1096109
>gb|CP000183.1| Drosophila melanogaster genomic scaffold 211000022280458 Length = 100390 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cacagcagcaggcgcaggtt 304 |||||||||||||||||||| Sbjct: 52663 cacagcagcaggcgcaggtt 52682 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cacagcagcaggcgcaggtt 304 |||||||||||||||||||| Sbjct: 50667 cacagcagcaggcgcaggtt 50686
>dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-172F10, complete sequence Length = 164943 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 tgtaaagttggttcccattg 437 |||||||||||||||||||| Sbjct: 148233 tgtaaagttggttcccattg 148214 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,630,940 Number of Sequences: 3902068 Number of extensions: 3630940 Number of successful extensions: 66647 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66629 Number of HSP's gapped (non-prelim): 18 length of query: 537 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 514 effective length of database: 17,143,297,704 effective search space: 8811655019856 effective search space used: 8811655019856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)