ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY106217.1| Zea mays PCO093522 mRNA sequence 333 3e-88
2dbj|AK103977.1| Oryza sativa (japonica cultivar-group) cDNA clon... 313 3e-82
3dbj|AK068862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 313 3e-82
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
5dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
6dbj|AP003713.3| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
7gb|BT018941.1| Zea mays clone Contig87.F mRNA sequence 88 3e-14
8gb|DQ324854.1| Azospirillum brasilense putative anti-sigma E gen... 44 0.38
9gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.5
10emb|BX055800.1|CNS09F7W Single read from an extremity of a full-... 42 1.5
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
13emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.5
14emb|AL732642.4|CNS08C9H Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.5
15dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.5
16ref|NM_111903.1| Arabidopsis thaliana ATNAP7 AT3G10670 (ATNAP7) ... 40 5.9
17gb|DQ022656.1| Azospirillum brasilense OxyR (oxyR), AhpC (ahpC),... 40 5.9
18gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete ge... 40 5.9
19ref|XM_751823.1| Ustilago maydis 521 hypothetical protein (UM007... 40 5.9
20ref|XM_382977.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 5.9
21gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC... 40 5.9
22gb|AY035125.1| Arabidopsis thaliana putative ABC transporter ATP... 40 5.9
23gb|AC175207.2| Sporobolomyces roseus clone JGIBAIF-9L20, complet... 40 5.9
24gb|AE005984.1| Caulobacter crescentus CB15 section 310 of 359 of... 40 5.9
25emb|BX822291.1|CNS0A774 Arabidopsis thaliana Full-length cDNA Co... 40 5.9
26emb|BX824893.1|CNS0A6YG Arabidopsis thaliana Full-length cDNA Co... 40 5.9
27emb|BX824371.1|CNS0A6WF Arabidopsis thaliana Full-length cDNA Co... 40 5.9
28emb|BX823288.1|CNS0A6IN Arabidopsis thaliana Full-length cDNA Co... 40 5.9
29gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13... 40 5.9
30gb|AY085010.1| Arabidopsis thaliana clone 124334 mRNA, complete ... 40 5.9
31dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 5.9
32dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.9
33dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 5.9

>gb|AY106217.1| Zea mays PCO093522 mRNA sequence
          Length = 679

 Score =  333 bits (168), Expect = 3e-88
 Identities = 305/351 (86%), Gaps = 6/351 (1%)
 Strand = Plus / Plus

                                                                       
Query: 96  gatgaccatcatcatcgaccagactcagttcgatgcggcggcggagaggaaggtcgcc-- 153
           |||||| |||| ||| || ||| | ||| ||||||||| |||||||||||| ||| ||  
Sbjct: 115 gatgacgatcaccattgaacagccccagctcgatgcggtggcggagaggaaagtccccgg 174

                                                                       
Query: 154 ----ggggacccgggggagctcgtgctcgacggcggcttcaccgtgccggattccaacgc 209
               || ||||| | |||||| |||||||||| |||||||  |||||||||  |||||||
Sbjct: 175 cggaggtgaccccgcggagctggtgctcgacgccggcttcgtcgtgccggacgccaacgc 234

                                                                       
Query: 210 cttcggccacaccttcagggactacgacgcggagtcggagcggaagaagacggtggagga 269
           ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 235 cttcggcaataccttcagggactacgacgcggagtcggagcggaagcagacggtagagga 294

                                                                       
Query: 270 gttctaccgcgtgaaccacatcagccagacgtacgagttcgtgcggcggatgcgggacgc 329
           ||||||||| ||||||||| | || |||||| |||||||||||  |||||||||||  | 
Sbjct: 295 gttctaccgggtgaaccacgtgaggcagacgcacgagttcgtggcgcggatgcgggcgga 354

                                                                       
Query: 330 gtacgcgcggctggacaggacggagatgagcatctgggagtgcatcgagctgctcaacga 389
           ||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 355 gtacgggcggctggacaagacggagatgggcatctgggagtgcatcgagctgctgaacga 414

                                                              
Query: 390 gttcatcgacgacagcgaccccgacctcgacatgccgcagatcgagcacct 440
           ||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 415 gttcatcgacgacagcgacccggacctggacatgccccagatcgagcacct 465



to top

>dbj|AK103977.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G02, full
           insert sequence
          Length = 1288

 Score =  313 bits (158), Expect = 3e-82
 Identities = 248/278 (89%)
 Strand = Plus / Plus

                                                                       
Query: 165 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 224
           |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 266 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 325

                                                                       
Query: 225 cagggactacgacgcggagtcggagcggaagaagacggtggaggagttctaccgcgtgaa 284
           |||| | || || || ||||| ||| ||||| |||||||||||||||||||||| || ||
Sbjct: 326 caggaattatgaggccgagtctgagaggaaggagacggtggaggagttctaccgggtcaa 385

                                                                       
Query: 285 ccacatcagccagacgtacgagttcgtgcggcggatgcgggacgcgtacgcgcggctgga 344
           |||||||| |||||| || || |||||| ||||||||||||| | |||||   || ||||
Sbjct: 386 ccacatcaaccagacatatgatttcgtgaggcggatgcgggaggagtacggtagggtgga 445

                                                                       
Query: 345 caggacggagatgagcatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 404
           || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caagacggagatggggatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 505

                                                 
Query: 405 cgaccccgacctcgacatgccgcagatcgagcacctcc 442
           |||||| |||||||||||||||||||||||||||||||
Sbjct: 506 cgacccggacctcgacatgccgcagatcgagcacctcc 543



to top

>dbj|AK068862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169F14, full
           insert sequence
          Length = 1289

 Score =  313 bits (158), Expect = 3e-82
 Identities = 248/278 (89%)
 Strand = Plus / Plus

                                                                       
Query: 165 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 224
           |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 267 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 326

                                                                       
Query: 225 cagggactacgacgcggagtcggagcggaagaagacggtggaggagttctaccgcgtgaa 284
           |||| | || || || ||||| ||| ||||| |||||||||||||||||||||| || ||
Sbjct: 327 caggaattatgaggccgagtctgagaggaaggagacggtggaggagttctaccgggtcaa 386

                                                                       
Query: 285 ccacatcagccagacgtacgagttcgtgcggcggatgcgggacgcgtacgcgcggctgga 344
           |||||||| |||||| || || |||||| ||||||||||||| | |||||   || ||||
Sbjct: 387 ccacatcaaccagacatatgatttcgtgaggcggatgcgggaggagtacggtagggtgga 446

                                                                       
Query: 345 caggacggagatgagcatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 404
           || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caagacggagatggggatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 506

                                                 
Query: 405 cgaccccgacctcgacatgccgcagatcgagcacctcc 442
           |||||| |||||||||||||||||||||||||||||||
Sbjct: 507 cgacccggacctcgacatgccgcagatcgagcacctcc 544



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  176 bits (89), Expect = 4e-41
 Identities = 119/129 (92%)
 Strand = Plus / Plus

                                                                            
Query: 314      ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 373
                ||||||||||||| | |||||   || |||||| |||||||||| | |||||||||||||
Sbjct: 21132448 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 21132507

                                                                            
Query: 374      tcgagctgctcaacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcg 433
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 21132508 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcg 21132567

                         
Query: 434      agcacctcc 442
                |||||||||
Sbjct: 21132568 agcacctcc 21132576



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                            
Query: 165      ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 224
                |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 21131065 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 21131124

                    
Query: 225      cagg 228
                ||||
Sbjct: 21131125 cagg 21131128



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                           
Query: 241      gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 299
                ||||| ||| ||||| |||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 21132241 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 21132299



to top

>dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0456F09
          Length = 141336

 Score =  176 bits (89), Expect = 4e-41
 Identities = 119/129 (92%)
 Strand = Plus / Plus

                                                                         
Query: 314   ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 373
             ||||||||||||| | |||||   || |||||| |||||||||| | |||||||||||||
Sbjct: 31109 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 31168

                                                                         
Query: 374   tcgagctgctcaacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcg 433
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 31169 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcg 31228

                      
Query: 434   agcacctcc 442
             |||||||||
Sbjct: 31229 agcacctcc 31237



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                         
Query: 165   ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 224
             |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 29726 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 29785

                 
Query: 225   cagg 228
             ||||
Sbjct: 29786 cagg 29789



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                        
Query: 241   gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 299
             ||||| ||| ||||| |||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 30902 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 30960



to top

>dbj|AP003713.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0528E12
          Length = 139750

 Score =  176 bits (89), Expect = 4e-41
 Identities = 119/129 (92%)
 Strand = Plus / Plus

                                                                          
Query: 314    ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 373
              ||||||||||||| | |||||   || |||||| |||||||||| | |||||||||||||
Sbjct: 129449 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 129508

                                                                          
Query: 374    tcgagctgctcaacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcg 433
              ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 129509 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcg 129568

                       
Query: 434    agcacctcc 442
              |||||||||
Sbjct: 129569 agcacctcc 129577



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                          
Query: 165    ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 224
              |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 128066 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 128125

                  
Query: 225    cagg 228
              ||||
Sbjct: 128126 cagg 128129



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                         
Query: 241    gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 299
              ||||| ||| ||||| |||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 129242 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 129300



to top

>gb|BT018941.1| Zea mays clone Contig87.F mRNA sequence
          Length = 783

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                   
Query: 385 aacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcgagcacct 440
           |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 775 aacgagttcatcgacgacagcgacccggacctggacatgccccagatcgagcacct 720



to top

>gb|DQ324854.1| Azospirillum brasilense putative anti-sigma E gene, complete cds
          Length = 696

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 172 gtgctcgacggcggcttcaccg 193
           ||||||||||||||||||||||
Sbjct: 508 gtgctcgacggcggcttcaccg 529



to top

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 165     ggagctcgtgctcgacggcggcttcaccg 193
               |||||||||| ||||||||||||| ||||
Sbjct: 1658588 ggagctcgtgatcgacggcggctttaccg 1658616



to top

>emb|BX055800.1|CNS09F7W Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC34CC07 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 641

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 102 catcatcatcgaccagactcagttc 126
           ||||||||||||||||| |||||||
Sbjct: 414 catcatcatcgaccagaatcagttc 438



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 40       ctccgccgctctcgctgccgcgaga 64
                |||||||||||| ||||||||||||
Sbjct: 10056850 ctccgccgctcttgctgccgcgaga 10056826



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 40       ctccgccgctctcgctgccgcgaga 64
                |||||||||||| ||||||||||||
Sbjct: 10056735 ctccgccgctcttgctgccgcgaga 10056711



to top

>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 40     ctccgccgctctcgctgccgcgaga 64
              |||||||||||| ||||||||||||
Sbjct: 105771 ctccgccgctcttgctgccgcgaga 105795



to top

>emb|AL732642.4|CNS08C9H Oryza sativa chromosome 12, . BAC OSJNBb0071E08 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 132906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 40   ctccgccgctctcgctgccgcgaga 64
            |||||||||||| ||||||||||||
Sbjct: 1224 ctccgccgctcttgctgccgcgaga 1248



to top

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 255     gaagacggtggaggagttcta 275
               |||||||||||||||||||||
Sbjct: 3065647 gaagacggtggaggagttcta 3065627



to top

>ref|NM_111903.1| Arabidopsis thaliana ATNAP7 AT3G10670 (ATNAP7) mRNA, complete cds
          Length = 1350

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 gcggaagaagacggtggagg 268
           ||||||||||||||||||||
Sbjct: 67  gcggaagaagacggtggagg 48



to top

>gb|DQ022656.1| Azospirillum brasilense OxyR (oxyR), AhpC (ahpC), and AhpF (ahpF)
            genes, complete cds; and oxidoreductase gene, partial cds
          Length = 4471

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 389  agttcatcgacgacagcgaccccgacct 416
            |||||||||||| ||||||| |||||||
Sbjct: 1444 agttcatcgacgtcagcgacgccgacct 1471



to top

>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome
          Length = 138390

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   ggacgcgtacgcgcggctgg 343
             ||||||||||||||||||||
Sbjct: 33662 ggacgcgtacgcgcggctgg 33681



to top

>ref|XM_751823.1| Ustilago maydis 521 hypothetical protein (UM00769.1) partial mRNA
          Length = 993

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 tgcatcgagctgctcaacga 389
           ||||||||||||||||||||
Sbjct: 307 tgcatcgagctgctcaacga 326



to top

>ref|XM_382977.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG02801.1)
            partial mRNA
          Length = 2130

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 132  ggcggcggagaggaaggtcg 151
            ||||||||||||||||||||
Sbjct: 1629 ggcggcggagaggaaggtcg 1610



to top

>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence,
             complete sequence
          Length = 80379

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   gcggaagaagacggtggagg 268
             ||||||||||||||||||||
Sbjct: 79087 gcggaagaagacggtggagg 79068



to top

>gb|AY035125.1| Arabidopsis thaliana putative ABC transporter ATPase (At3g10670)
           mRNA, complete cds
          Length = 1368

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 gcggaagaagacggtggagg 268
           ||||||||||||||||||||
Sbjct: 67  gcggaagaagacggtggagg 48



to top

>gb|AC175207.2| Sporobolomyces roseus clone JGIBAIF-9L20, complete sequence
          Length = 36012

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   ggaagaagacggtggaggag 270
             ||||||||||||||||||||
Sbjct: 29296 ggaagaagacggtggaggag 29277



to top

>gb|AE005984.1| Caulobacter crescentus CB15 section 310 of 359 of the complete genome
          Length = 10212

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  tcgatgcggcggcggagagg 144
            ||||||||||||||||||||
Sbjct: 5804 tcgatgcggcggcggagagg 5785



to top

>emb|BX822291.1|CNS0A774 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB26ZH03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1277

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 gcggaagaagacggtggagg 268
           ||||||||||||||||||||
Sbjct: 54  gcggaagaagacggtggagg 35



to top

>emb|BX824893.1|CNS0A6YG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH80ZD10 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1303

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 gcggaagaagacggtggagg 268
           ||||||||||||||||||||
Sbjct: 52  gcggaagaagacggtggagg 33



to top

>emb|BX824371.1|CNS0A6WF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH44ZA08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1276

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 gcggaagaagacggtggagg 268
           ||||||||||||||||||||
Sbjct: 52  gcggaagaagacggtggagg 33



to top

>emb|BX823288.1|CNS0A6IN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS1ZF02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1311

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 gcggaagaagacggtggagg 268
           ||||||||||||||||||||
Sbjct: 53  gcggaagaagacggtggagg 34



to top

>gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete
             sequence
          Length = 118107

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   gcggaagaagacggtggagg 268
             ||||||||||||||||||||
Sbjct: 10036 gcggaagaagacggtggagg 10017



to top

>gb|AY085010.1| Arabidopsis thaliana clone 124334 mRNA, complete sequence
          Length = 1350

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 gcggaagaagacggtggagg 268
           ||||||||||||||||||||
Sbjct: 67  gcggaagaagacggtggagg 48



to top

>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 176     tcgacggcggcttcaccgtg 195
               ||||||||||||||||||||
Sbjct: 4447233 tcgacggcggcttcaccgtg 4447214



to top

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 175     ctcgacggcggcttcaccgt 194
               ||||||||||||||||||||
Sbjct: 1339723 ctcgacggcggcttcaccgt 1339704



to top

>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 377     agctgctcaacgagttcatc 396
               ||||||||||||||||||||
Sbjct: 1933990 agctgctcaacgagttcatc 1933971


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,444,983
Number of Sequences: 3902068
Number of extensions: 2444983
Number of successful extensions: 56912
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56381
Number of HSP's gapped (non-prelim): 531
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top