Clone Information

BLAST Search Result

Clone Name	basd3c10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY104750.1\| Zea mays PCO077049 mRNA sequence	424	e-115
2	ref\|NM_195184.1\| Oryza sativa (japonica cultivar-group) putative...	385	e-103
3	dbj\|AK066368.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	385	e-103
4	gb\|AC091238.2\| Oryza sativa (japonica cultivar-group) chromosome...	127	5e-26
5	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	127	5e-26
6	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	127	5e-26
7	ref\|XM_702496.1\| PREDICTED: Danio rerio similar to Alanyl-tRNA s...	56	1e-04
8	ref\|XM_679559.1\| PREDICTED: Danio rerio similar to Alanyl-tRNA s...	56	1e-04
9	emb\|BX649641.19\| Zebrafish DNA sequence from clone CH211-223O1 i...	56	1e-04
10	gb\|BC071378.1\| Danio rerio alanyl-tRNA synthetase, mRNA (cDNA cl...	56	1e-04
11	emb\|BX936396.13\| Zebrafish DNA sequence from clone DKEY-21M4 in ...	54	6e-04
12	gb\|AC154365.2\| Mus musculus BAC clone RP24-567H4 from chromosome...	42	2.2
13	gb\|AC110222.9\| Mus musculus chromosome 3, clone RP24-211P23, com...	40	8.6
14	gb\|AC007138.1\| Arabidopsis thaliana BAC T7B11 from chromosome IV...	40	8.6
15	ref\|XM_953428.1\| Neurospora crassa OR74A hypothetical protein (N...	40	8.6
16	ref\|XM_329884.1\| Neurospora crassa OR74A hypothetical protein (N...	40	8.6
17	gb\|AY286122.1\| Cyanidioschyzon merolae DBV201 chromosome 1, comp...	40	8.6
18	gb\|AC092482.71\| Mus musculus strain C57BL/6J clone rp23-60j11, c...	40	8.6
19	emb\|CT009488.4\| M.truncatula DNA sequence from clone MTH2-70J8 o...	40	8.6
20	ref\|XM_724451.1\| Plasmodium yoelii yoelii str. 17XNL hypothetica...	40	8.6
21	gb\|AC161399.2\| Medicago truncatula chromosome 2 BAC clone mte1-3...	40	8.6
22	gb\|AC127169.13\| Medicago truncatula clone mth2-36n3, complete se...	40	8.6
23	gb\|AC141112.7\| Medicago truncatula clone mth2-15m12, complete se...	40	8.6
24	emb\|AL138742.24\| Human DNA sequence from clone RP1-76K10 on chro...	40	8.6
25	emb\|AL136370.4\| Human DNA sequence from clone RP11-101E13 on chr...	40	8.6
26	ref\|XM_789384.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	8.6
27	emb\|AL590447.1\|CNS07EGE chromosome VII of strain GB-M1 of Enceph...	40	8.6
28	emb\|AL161493.2\|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, c...	40	8.6
29	gb\|AC166898.17\| Medicago truncatula clone mth2-70l3, complete se...	40	8.6
30	gb\|AC183093.2\| Mus musculus BAC clone RP24-107H20 from chromosom...	40	8.6
31	gb\|AC115100.3\| Homo sapiens chromosome 18, clone RP11-237L15, co...	40	8.6
32	gb\|AC093882.2\| Homo sapiens BAC clone RP11-658L13 from 4, comple...	40	8.6
33	gb\|AC091143.6\| Homo sapiens chromosome 18, clone CTD-3056C12, co...	40	8.6
34	gb\|AC127520.5\| Homo sapiens chromosome 15, clone RP11-825M14, co...	40	8.6
35	gb\|AC147963.2\| Medicago truncatula chromosome 1 BAC clone mth2-4...	40	8.6
36	gb\|AC055715.13\|AC055715 Homo sapiens 12 BAC RP11-593B8 (Roswell ...	40	8.6
37	ref\|NM_059830.4\| Caenorhabditis elegans INSulin related family m...	40	8.6
38	ref\|XM_395392.2\| PREDICTED: Apis mellifera similar to GA12250-PA...	40	8.6
39	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
40	dbj\|AP006529.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
41	emb\|CR352252.12\| Zebrafish DNA sequence from clone CH211-181P13 ...	40	8.6
42	emb\|Z81133.1\|CET28B8 Caenorhabditis elegans Cosmid T28B8, comple...	40	8.6
43	emb\|CT030245.8\| M.truncatula DNA sequence from clone MTH2-59B18 ...	40	8.6
44	gb\|AC092481.28\| Mus musculus strain C57BL/6J chromosome 17 clone...	40	8.6
45	gb\|AC002468.1\|AC002468 Human Chromosome 15q26.1 PAC clone pDJ417...	40	8.6
46	emb\|CR391944.10\| Zebrafish DNA sequence from clone CH211-95K19 i...	40	8.6
47	gb\|AE008692.1\| Zymomonas mobilis subsp. mobilis ZM4, complete ge...	40	8.6
48	dbj\|AB008096.1\| Caenorhabditis elegans ins-1 mRNA for Ceinsulin-...	40	8.6

>gb|AY104750.1| Zea mays PCO077049 mRNA sequence
          Length = 3244

 Score =  424 bits (214), Expect = e-115
 Identities = 513/613 (83%)
 Strand = Plus / Plus

                                                                        
Query: 15   gaaataaaattagctgacgcaaancgcataaatggtctgcgagctgtgtttggtgaaatc 74
            ||||||||| |||  || || || |||||||||||||| || ||||||||||||||||||
Sbjct: 2139 gaaataaaactagaggatgcgaagcgcataaatggtcttcgtgctgtgtttggtgaaatc 2198

                                                                        
Query: 75   taccctgatcctgtaagagttgtatcgattggttgcaaagtggaagatctgcttgcaaac 134
            ||||||||||| ||||||||||||||  ||||| ||||||| ||||||||||||||| | 
Sbjct: 2199 taccctgatccagtaagagttgtatcagttggtcgcaaagttgaagatctgcttgcagat 2258

                                                                        
Query: 135  cctgaaagcaaagaatggttatccatatcaactgagctgtgtggaggtacacacatttca 194
            ||||| |||||||| ||| |||||||||| ||||| || |||||||||||||| ||  ||
Sbjct: 2259 cctgatagcaaagagtggctatccatatcgactgaactatgtggaggtacacatatcaca 2318

                                                                        
Query: 195  aacactagagatgctgcagcatttgccctcatatctgaagagggtatcgcgaaaggtgtt 254
            ||||| |||||||||  ||||||||| ||| ||||||| |||||||| || ||||| |||
Sbjct: 2319 aacacaagagatgctaaagcatttgcactcttatctgaggagggtattgcaaaaggagtt 2378

                                                                        
Query: 255  cggaggataacggctgttactgctgagtgtgcctcccaggctatgaagctggcatcatct 314
             |||||||||| || || |||||||  |||||| ||||||||||| || |||| ||||||
Sbjct: 2379 aggaggataacagccgtgactgctggatgtgccacccaggctatggagttggcgtcatct 2438

                                                                        
Query: 315  attgatactgatatcaatgaagcatctaaactggacggagcaacattggagaagaaaatt 374
            || ||| ||||||||||| |||||||| |  |||| |||||    ||||| |||||||||
Sbjct: 2439 atcgattctgatatcaataaagcatctcagttggagggagctttgttggaaaagaaaatt 2498

                                                                        
Query: 375  gggtccatcaagaatacactggatgcggctgctatcccggctgcaagaaaagctgatcta 434
            |  |||||||||| |   |||||||| ||||||||||| ||||| |||||||||||| | 
Sbjct: 2499 gcttccatcaagagtgggctggatgcagctgctatccctgctgcgagaaaagctgatttg 2558

                                                                        
Query: 435  agaggcaatatctcaaagctggaggatcaacttaggaaggcgaagaagaaaatgggcgaa 494
            ||||||||  | |||||| | |||||  ||||||||||||| |||||||||||||| || 
Sbjct: 2559 agaggcaaggtttcaaagttagaggacgaacttaggaaggcaaagaagaaaatgggggag 2618

                                                                        
Query: 495  gaaaatatccaaaaggctgtcaagactgtcatagatgctgcagaagctactctttccgaa 554
             ||||||| ||||||||||| ||| | |  || ||||||||||||||| ||||||| | |
Sbjct: 2619 caaaatatacaaaaggctgtgaagtccgcaatggatgctgcagaagctgctctttcagga 2678

                                                                        
Query: 555  ggaaaacccttctgtgttgctcatgtcgacgtgggtcttgataccactgctgtccgggaa 614
               ||||| || |||||| ||||||| || ||||||||||||||||| |||||||| || 
Sbjct: 2679 aataaaccgttttgtgttactcatgtggatgtgggtcttgataccacggctgtccgtgag 2738

                         
Query: 615  gcagttgtcaaag 627
            || ||| ||||||
Sbjct: 2739 gcggttatcaaag 2751

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>ref|NM_195184.1| Oryza sativa (japonica cultivar-group) putative cytosolic tRNA-Ala
            synthetase (OSJNBb0022I16.6), mRNA
          Length = 2085

 Score =  385 bits (194), Expect = e-103
 Identities = 508/613 (82%)
 Strand = Plus / Plus

                                                                        
Query: 15   gaaataaaattagctgacgcaaancgcataaatggtctgcgagctgtgtttggtgaaatc 74
            |||||||||||||| || || || |||||||||||||| |||||||||||||||||||||
Sbjct: 1213 gaaataaaattagcagatgcgaagcgcataaatggtctacgagctgtgtttggtgaaatc 1272

                                                                        
Query: 75   taccctgatcctgtaagagttgtatcgattggttgcaaagtggaagatctgcttgcaaac 134
            || |||||||| ||||||||||||||  ||||| |||||||||||||||| ||||| || 
Sbjct: 1273 tatcctgatccggtaagagttgtatcagttggtcgcaaagtggaagatctacttgccaat 1332

                                                                        
Query: 135  cctgaaagcaaagaatggttatccatatcaactgagctgtgtggaggtacacacatttca 194
            |||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||  |
Sbjct: 1333 cctgaaagcaaagaatggctatccatttcaacagagctgtgtggcggtacacacattaaa 1392

                                                                        
Query: 195  aacactagagatgctgcagcatttgccctcatatctgaagagggtatcgcgaaaggtgtt 254
            |||||||| || || | ||||||||||||  | || || |||||||| || |||||||||
Sbjct: 1393 aacactagcgaggcagaagcatttgccctgttgtccgaggagggtattgctaaaggtgtt 1452

                                                                        
Query: 255  cggaggataacggctgttactgctgagtgtgcctcccaggctatgaagctggcatcatct 314
             ||||||| || |||||||||||| |   ||||||  | ||||| |||   |||||||||
Sbjct: 1453 aggaggatcacagctgttactgctaaacatgcctctgatgctataaaggatgcatcatct 1512

                                                                        
Query: 315  attgatactgatatcaatgaagcatctaaactggacggagcaacattggagaagaaaatt 374
            |||||| |||| |||||||||||||| ||| |||| ||||| | |||||| ||||  |||
Sbjct: 1513 attgattctgaaatcaatgaagcatcaaaattggagggagctatattggaaaagacgatt 1572

                                                                        
Query: 375  gggtccatcaagaatacactggatgcggctgctatcccggctgcaagaaaagctgatcta 434
            |  ||||||||||  |  || ||| | |||   || || |||||||||||||||||||| 
Sbjct: 1573 gcttccatcaagagcaagcttgatacagctttaattccagctgcaagaaaagctgatctt 1632

                                                                        
Query: 435  agaggcaatatctcaaagctggaggatcaacttaggaaggcgaagaagaaaatgggcgaa 494
            | ||||    | || ||| |||||||| ||||||||||||| ||||||||||||||||| 
Sbjct: 1633 aaaggccgggtgtcgaagttggaggatgaacttaggaaggccaagaagaaaatgggcgag 1692

                                                                        
Query: 495  gaaaatatccaaaaggctgtcaagactgtcatagatgctgcagaagctactctttccgaa 554
            || || ||||| ||||| || |||  ||  |||||||| ||  || || ||||||| |||
Sbjct: 1693 gagaacatccagaaggccgtgaagtttgcaatagatgccgcccaaactgctctttctgaa 1752

                                                                        
Query: 555  ggaaaacccttctgtgttgctcatgtcgacgtgggtcttgataccactgctgtccgggaa 614
            ||||| | |||||||||||||||||| || ||||||||||| || | |||| | ||||||
Sbjct: 1753 ggaaagcgcttctgtgttgctcatgtagatgtgggtcttgacacaagtgctattcgggaa 1812

                         
Query: 615  gcagttgtcaaag 627
            |||||| ||||||
Sbjct: 1813 gcagttatcaaag 1825

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>dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059M16, full
            insert sequence
          Length = 3214

 Score =  385 bits (194), Expect = e-103
 Identities = 508/613 (82%)
 Strand = Plus / Plus

                                                                        
Query: 15   gaaataaaattagctgacgcaaancgcataaatggtctgcgagctgtgtttggtgaaatc 74
            |||||||||||||| || || || |||||||||||||| |||||||||||||||||||||
Sbjct: 2136 gaaataaaattagcagatgcgaagcgcataaatggtctacgagctgtgtttggtgaaatc 2195

                                                                        
Query: 75   taccctgatcctgtaagagttgtatcgattggttgcaaagtggaagatctgcttgcaaac 134
            || |||||||| ||||||||||||||  ||||| |||||||||||||||| ||||| || 
Sbjct: 2196 tatcctgatccggtaagagttgtatcagttggtcgcaaagtggaagatctacttgccaat 2255

                                                                        
Query: 135  cctgaaagcaaagaatggttatccatatcaactgagctgtgtggaggtacacacatttca 194
            |||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||  |
Sbjct: 2256 cctgaaagcaaagaatggctatccatttcaacagagctgtgtggcggtacacacattaaa 2315

                                                                        
Query: 195  aacactagagatgctgcagcatttgccctcatatctgaagagggtatcgcgaaaggtgtt 254
            |||||||| || || | ||||||||||||  | || || |||||||| || |||||||||
Sbjct: 2316 aacactagcgaggcagaagcatttgccctgttgtccgaggagggtattgctaaaggtgtt 2375

                                                                        
Query: 255  cggaggataacggctgttactgctgagtgtgcctcccaggctatgaagctggcatcatct 314
             ||||||| || |||||||||||| |   ||||||  | ||||| |||   |||||||||
Sbjct: 2376 aggaggatcacagctgttactgctaaacatgcctctgatgctataaaggatgcatcatct 2435

                                                                        
Query: 315  attgatactgatatcaatgaagcatctaaactggacggagcaacattggagaagaaaatt 374
            |||||| |||| |||||||||||||| ||| |||| ||||| | |||||| ||||  |||
Sbjct: 2436 attgattctgaaatcaatgaagcatcaaaattggagggagctatattggaaaagacgatt 2495

                                                                        
Query: 375  gggtccatcaagaatacactggatgcggctgctatcccggctgcaagaaaagctgatcta 434
            |  ||||||||||  |  || ||| | |||   || || |||||||||||||||||||| 
Sbjct: 2496 gcttccatcaagagcaagcttgatacagctttaattccagctgcaagaaaagctgatctt 2555

                                                                        
Query: 435  agaggcaatatctcaaagctggaggatcaacttaggaaggcgaagaagaaaatgggcgaa 494
            | ||||    | || ||| |||||||| ||||||||||||| ||||||||||||||||| 
Sbjct: 2556 aaaggccgggtgtcgaagttggaggatgaacttaggaaggccaagaagaaaatgggcgag 2615

                                                                        
Query: 495  gaaaatatccaaaaggctgtcaagactgtcatagatgctgcagaagctactctttccgaa 554
            || || ||||| ||||| || |||  ||  |||||||| ||  || || ||||||| |||
Sbjct: 2616 gagaacatccagaaggccgtgaagtttgcaatagatgccgcccaaactgctctttctgaa 2675

                                                                        
Query: 555  ggaaaacccttctgtgttgctcatgtcgacgtgggtcttgataccactgctgtccgggaa 614
            ||||| | |||||||||||||||||| || ||||||||||| || | |||| | ||||||
Sbjct: 2676 ggaaagcgcttctgtgttgctcatgtagatgtgggtcttgacacaagtgctattcgggaa 2735

                         
Query: 615  gcagttgtcaaag 627
            |||||| ||||||
Sbjct: 2736 gcagttatcaaag 2748

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>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0022I16, complete sequence
          Length = 127068

 Score =  127 bits (64), Expect = 5e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                         
Query: 72    atctaccctgatcctgtaagagttgtatcgattggttgcaaagtggaagatctgcttgca 131
             ||||| |||||||| ||||||||||||||  ||||| |||||||||||||||| ||||| 
Sbjct: 54651 atctatcctgatccggtaagagttgtatcagttggtcgcaaagtggaagatctacttgcc 54710

                                                                 
Query: 132   aaccctgaaagcaaagaatggttatccatatcaactgagctgtgtggaggta 183
             || |||||||||||||||||| ||||||| ||||| ||||||||||| ||||
Sbjct: 54711 aatcctgaaagcaaagaatggctatccatttcaacagagctgtgtggcggta 54762



 Score =  117 bits (59), Expect = 5e-23
 Identities = 143/171 (83%)
 Strand = Plus / Plus

                                                                         
Query: 457   aggatcaacttaggaaggcgaagaagaaaatgggcgaagaaaatatccaaaaggctgtca 516
             ||||| ||||||||||||| ||||||||||||||||| || || ||||| ||||| || |
Sbjct: 55452 aggatgaacttaggaaggccaagaagaaaatgggcgaggagaacatccagaaggccgtga 55511

                                                                         
Query: 517   agactgtcatagatgctgcagaagctactctttccgaaggaaaacccttctgtgttgctc 576
             ||  ||  |||||||| ||  || || ||||||| |||||||| | ||||||||||||||
Sbjct: 55512 agtttgcaatagatgccgcccaaactgctctttctgaaggaaagcgcttctgtgttgctc 55571

                                                                
Query: 577   atgtcgacgtgggtcttgataccactgctgtccgggaagcagttgtcaaag 627
             |||| || ||||||||||| || | |||| | |||||||||||| ||||||
Sbjct: 55572 atgtagatgtgggtcttgacacaagtgctattcgggaagcagttatcaaag 55622



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 152/186 (81%)
 Strand = Plus / Plus

                                                                         
Query: 179   aggtacacacatttcaaacactagagatgctgcagcatttgccctcatatctgaagaggg 238
             |||||||||||||  ||||||||| || || | ||||||||||||  | || || |||||
Sbjct: 54825 aggtacacacattaaaaacactagcgaggcagaagcatttgccctgttgtccgaggaggg 54884

                                                                         
Query: 239   tatcgcgaaaggtgttcggaggataacggctgttactgctgagtgtgcctcccaggctat 298
             ||| || ||||||||| ||||||| || |||||||||||| |   ||||||  | |||||
Sbjct: 54885 tattgctaaaggtgttaggaggatcacagctgttactgctaaacatgcctctgatgctat 54944

                                                                         
Query: 299   gaagctggcatcatctattgatactgatatcaatgaagcatctaaactggacggagcaac 358
              |||   ||||||||||||||| |||| |||||||||||||| ||| |||| ||||| | 
Sbjct: 54945 aaaggatgcatcatctattgattctgaaatcaatgaagcatcaaaattggagggagctat 55004

                   
Query: 359   attgga 364
             ||||||
Sbjct: 55005 attgga 55010



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                      
Query: 15    gaaataaaattagctgacgcaaancgcataaatggtctgcgagctgtgtttggtgaa 71
             |||||||||||||| || || || |||||||||||||| ||||||||||||||||||
Sbjct: 54492 gaaataaaattagcagatgcgaagcgcataaatggtctacgagctgtgtttggtgaa 54548



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   gctgcaagaaaagctgatct 433
             ||||||||||||||||||||
Sbjct: 55288 gctgcaagaaaagctgatct 55307

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  127 bits (64), Expect = 5e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                           
Query: 72      atctaccctgatcctgtaagagttgtatcgattggttgcaaagtggaagatctgcttgca 131
               ||||| |||||||| ||||||||||||||  ||||| |||||||||||||||| ||||| 
Sbjct: 5291453 atctatcctgatccggtaagagttgtatcagttggtcgcaaagtggaagatctacttgcc 5291512

                                                                   
Query: 132     aaccctgaaagcaaagaatggttatccatatcaactgagctgtgtggaggta 183
               || |||||||||||||||||| ||||||| ||||| ||||||||||| ||||
Sbjct: 5291513 aatcctgaaagcaaagaatggctatccatttcaacagagctgtgtggcggta 5291564



 Score =  117 bits (59), Expect = 5e-23
 Identities = 143/171 (83%)
 Strand = Plus / Plus

                                                                           
Query: 457     aggatcaacttaggaaggcgaagaagaaaatgggcgaagaaaatatccaaaaggctgtca 516
               ||||| ||||||||||||| ||||||||||||||||| || || ||||| ||||| || |
Sbjct: 5292254 aggatgaacttaggaaggccaagaagaaaatgggcgaggagaacatccagaaggccgtga 5292313

                                                                           
Query: 517     agactgtcatagatgctgcagaagctactctttccgaaggaaaacccttctgtgttgctc 576
               ||  ||  |||||||| ||  || || ||||||| |||||||| | ||||||||||||||
Sbjct: 5292314 agtttgcaatagatgccgcccaaactgctctttctgaaggaaagcgcttctgtgttgctc 5292373

                                                                  
Query: 577     atgtcgacgtgggtcttgataccactgctgtccgggaagcagttgtcaaag 627
               |||| || ||||||||||| || | |||| | |||||||||||| ||||||
Sbjct: 5292374 atgtagatgtgggtcttgacacaagtgctattcgggaagcagttatcaaag 5292424



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 152/186 (81%)
 Strand = Plus / Plus

                                                                           
Query: 179     aggtacacacatttcaaacactagagatgctgcagcatttgccctcatatctgaagaggg 238
               |||||||||||||  ||||||||| || || | ||||||||||||  | || || |||||
Sbjct: 5291627 aggtacacacattaaaaacactagcgaggcagaagcatttgccctgttgtccgaggaggg 5291686

                                                                           
Query: 239     tatcgcgaaaggtgttcggaggataacggctgttactgctgagtgtgcctcccaggctat 298
               ||| || ||||||||| ||||||| || |||||||||||| |   ||||||  | |||||
Sbjct: 5291687 tattgctaaaggtgttaggaggatcacagctgttactgctaaacatgcctctgatgctat 5291746

                                                                           
Query: 299     gaagctggcatcatctattgatactgatatcaatgaagcatctaaactggacggagcaac 358
                |||   ||||||||||||||| |||| |||||||||||||| ||| |||| ||||| | 
Sbjct: 5291747 aaaggatgcatcatctattgattctgaaatcaatgaagcatcaaaattggagggagctat 5291806

                     
Query: 359     attgga 364
               ||||||
Sbjct: 5291807 attgga 5291812



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                        
Query: 15      gaaataaaattagctgacgcaaancgcataaatggtctgcgagctgtgtttggtgaa 71
               |||||||||||||| || || || |||||||||||||| ||||||||||||||||||
Sbjct: 5291294 gaaataaaattagcagatgcgaagcgcataaatggtctacgagctgtgtttggtgaa 5291350



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 414     gctgcaagaaaagctgatct 433
               ||||||||||||||||||||
Sbjct: 5292090 gctgcaagaaaagctgatct 5292109

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  127 bits (64), Expect = 5e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                           
Query: 72      atctaccctgatcctgtaagagttgtatcgattggttgcaaagtggaagatctgcttgca 131
               ||||| |||||||| ||||||||||||||  ||||| |||||||||||||||| ||||| 
Sbjct: 5292240 atctatcctgatccggtaagagttgtatcagttggtcgcaaagtggaagatctacttgcc 5292299

                                                                   
Query: 132     aaccctgaaagcaaagaatggttatccatatcaactgagctgtgtggaggta 183
               || |||||||||||||||||| ||||||| ||||| ||||||||||| ||||
Sbjct: 5292300 aatcctgaaagcaaagaatggctatccatttcaacagagctgtgtggcggta 5292351



 Score =  117 bits (59), Expect = 5e-23
 Identities = 143/171 (83%)
 Strand = Plus / Plus

                                                                           
Query: 457     aggatcaacttaggaaggcgaagaagaaaatgggcgaagaaaatatccaaaaggctgtca 516
               ||||| ||||||||||||| ||||||||||||||||| || || ||||| ||||| || |
Sbjct: 5293041 aggatgaacttaggaaggccaagaagaaaatgggcgaggagaacatccagaaggccgtga 5293100

                                                                           
Query: 517     agactgtcatagatgctgcagaagctactctttccgaaggaaaacccttctgtgttgctc 576
               ||  ||  |||||||| ||  || || ||||||| |||||||| | ||||||||||||||
Sbjct: 5293101 agtttgcaatagatgccgcccaaactgctctttctgaaggaaagcgcttctgtgttgctc 5293160

                                                                  
Query: 577     atgtcgacgtgggtcttgataccactgctgtccgggaagcagttgtcaaag 627
               |||| || ||||||||||| || | |||| | |||||||||||| ||||||
Sbjct: 5293161 atgtagatgtgggtcttgacacaagtgctattcgggaagcagttatcaaag 5293211



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 152/186 (81%)
 Strand = Plus / Plus

                                                                           
Query: 179     aggtacacacatttcaaacactagagatgctgcagcatttgccctcatatctgaagaggg 238
               |||||||||||||  ||||||||| || || | ||||||||||||  | || || |||||
Sbjct: 5292414 aggtacacacattaaaaacactagcgaggcagaagcatttgccctgttgtccgaggaggg 5292473

                                                                           
Query: 239     tatcgcgaaaggtgttcggaggataacggctgttactgctgagtgtgcctcccaggctat 298
               ||| || ||||||||| ||||||| || |||||||||||| |   ||||||  | |||||
Sbjct: 5292474 tattgctaaaggtgttaggaggatcacagctgttactgctaaacatgcctctgatgctat 5292533

                                                                           
Query: 299     gaagctggcatcatctattgatactgatatcaatgaagcatctaaactggacggagcaac 358
                |||   ||||||||||||||| |||| |||||||||||||| ||| |||| ||||| | 
Sbjct: 5292534 aaaggatgcatcatctattgattctgaaatcaatgaagcatcaaaattggagggagctat 5292593

                     
Query: 359     attgga 364
               ||||||
Sbjct: 5292594 attgga 5292599



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                        
Query: 15      gaaataaaattagctgacgcaaancgcataaatggtctgcgagctgtgtttggtgaa 71
               |||||||||||||| || || || |||||||||||||| ||||||||||||||||||
Sbjct: 5292081 gaaataaaattagcagatgcgaagcgcataaatggtctacgagctgtgtttggtgaa 5292137



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 414     gctgcaagaaaagctgatct 433
               ||||||||||||||||||||
Sbjct: 5292877 gctgcaagaaaagctgatct 5292896

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>ref|XM_702496.1| PREDICTED: Danio rerio similar to Alanyl-tRNA synthetase, transcript
            variant 3 (LOC559189), mRNA
          Length = 3672

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                        
Query: 48   ggtctgcgagctgtgtttggtgaaatctaccctgatcctgtaagagttgtatcgattggt 107
            ||||||||||| ||||||| ||| |  |||||||||||||||||||| || || ||||||
Sbjct: 2194 ggtctgcgagcagtgtttgatgagacataccctgatcctgtaagagtggtgtctattggt 2253

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>ref|XM_679559.1| PREDICTED: Danio rerio similar to Alanyl-tRNA synthetase, transcript
            variant 1 (LOC559189), mRNA
          Length = 3613

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                        
Query: 48   ggtctgcgagctgtgtttggtgaaatctaccctgatcctgtaagagttgtatcgattggt 107
            ||||||||||| ||||||| ||| |  |||||||||||||||||||| || || ||||||
Sbjct: 2135 ggtctgcgagcagtgtttgatgagacataccctgatcctgtaagagtggtgtctattggt 2194

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>emb|BX649641.19| Zebrafish DNA sequence from clone CH211-223O1 in linkage group 18,
              complete sequence
          Length = 141018

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                          
Query: 48     ggtctgcgagctgtgtttggtgaaatctaccctgatcctgtaagagttgtatcgattggt 107
              ||||||||||| ||||||| ||| |  |||||||||||||||||||| || || ||||||
Sbjct: 117131 ggtctgcgagcagtgtttgatgagacataccctgatcctgtaagagtggtgtctattggt 117190

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>gb|BC071378.1| Danio rerio alanyl-tRNA synthetase, mRNA (cDNA clone IMAGE:6895974),
            partial cds
          Length = 2471

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                        
Query: 48   ggtctgcgagctgtgtttggtgaaatctaccctgatcctgtaagagttgtatcgattggt 107
            ||||||||||| ||||||| ||| |  |||||||||||||||||||| || || ||||||
Sbjct: 2240 ggtctgcgagcagtgtttgatgagacgtaccctgatcctgtaagagtggtgtctattggt 2299

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>emb|BX936396.13| Zebrafish DNA sequence from clone DKEY-21M4 in linkage group 18,
             complete sequence
          Length = 27542

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 48    ggtctgcgagctgtgtttggtgaaatctaccctgatcctgtaagagt 94
             ||||||||||| ||||||| ||| |  ||||||||||||||||||||
Sbjct: 19392 ggtctgcgagcagtgtttgatgagacgtaccctgatcctgtaagagt 19346

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>gb|AC154365.2| Mus musculus BAC clone RP24-567H4 from chromosome 14, complete sequence
          Length = 151459

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 355   caacattggagaagaaaattg 375
             |||||||||||||||||||||
Sbjct: 23252 caacattggagaagaaaattg 23232

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>gb|AC110222.9| Mus musculus chromosome 3, clone RP24-211P23, complete sequence
          Length = 179958

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   tagagatgctgcagcatttg 219
             ||||||||||||||||||||
Sbjct: 59963 tagagatgctgcagcatttg 59944

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>gb|AC007138.1| Arabidopsis thaliana BAC T7B11 from chromosome IV near 10 cM, complete
             sequence
          Length = 120185

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   cacatttcaaacactagaga 205
             ||||||||||||||||||||
Sbjct: 65970 cacatttcaaacactagaga 65951

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>ref|XM_953428.1| Neurospora crassa OR74A hypothetical protein (NCU09526.1) partial
            mRNA
          Length = 1866

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 478  agaagaaaatgggcgaagaa 497
            ||||||||||||||||||||
Sbjct: 1325 agaagaaaatgggcgaagaa 1344

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>ref|XM_329884.1| Neurospora crassa OR74A hypothetical protein (NCU09526.1) partial
            mRNA
          Length = 1866

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 478  agaagaaaatgggcgaagaa 497
            ||||||||||||||||||||
Sbjct: 1325 agaagaaaatgggcgaagaa 1344

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>gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence
          Length = 422021

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    agagatgctgcagcatttgc 220
              ||||||||||||||||||||
Sbjct: 194243 agagatgctgcagcatttgc 194262

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>gb|AC092482.71| Mus musculus strain C57BL/6J clone rp23-60j11, complete sequence
          Length = 220334

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   agctgtgtggaggtacacac 188
             ||||||||||||||||||||
Sbjct: 82882 agctgtgtggaggtacacac 82863

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>emb|CT009488.4| M.truncatula DNA sequence from clone MTH2-70J8 on chromosome 3,
             complete sequence
          Length = 119377

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   ttatccatatcaactgagct 172
             ||||||||||||||||||||
Sbjct: 54738 ttatccatatcaactgagct 54757



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 551   cgaaggaaaacccttctgtg 570
             ||||||||||||||||||||
Sbjct: 28367 cgaaggaaaacccttctgtg 28386

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>ref|XM_724451.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01743)
            partial mRNA
          Length = 1560

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                        
Query: 473  ggcgaagaagaaaatgggcgaagaaaat 500
            ||||||||||||||| ||||||||||||
Sbjct: 1186 ggcgaagaagaaaat-ggcgaagaaaat 1212

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>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence
          Length = 172016

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   ttatccatatcaactgagct 172
             ||||||||||||||||||||
Sbjct: 27599 ttatccatatcaactgagct 27580

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>gb|AC127169.13| Medicago truncatula clone mth2-36n3, complete sequence
          Length = 124554

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 323   tgatatcaatgaagcatctaaact 346
             ||||||||||| ||||||||||||
Sbjct: 38570 tgatatcaatgtagcatctaaact 38593

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>gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete sequence
          Length = 135248

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 551    cgaaggaaaacccttctgtg 570
              ||||||||||||||||||||
Sbjct: 122963 cgaaggaaaacccttctgtg 122982

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>emb|AL138742.24| Human DNA sequence from clone RP1-76K10 on chromosome 6 Contains gene
            KIAA1009 or FLJ13551 and a CpG island, complete sequence
          Length = 118648

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  ctatgaagctggcatcatct 314
            ||||||||||||||||||||
Sbjct: 1095 ctatgaagctggcatcatct 1076

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>emb|AL136370.4| Human DNA sequence from clone RP11-101E13 on chromosome 1q31.2-31.3
             Contains a zinc finger protein 101 (ZNF101) pseudogene,
             the UCHL5 gene for ubiquitin carboxyl-terminal hydrolase
             L5, the SSA2 gene for Sjogren syndrome antigen A2 (60kDa,
             ribonucleoprotein autoantigen SS-A/Ro), the GLRX2 gene for
             glutaredoxin 2 and two CpG islands, complete sequence
          Length = 147978

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   ctgatatcaatgaagcatct 341
             ||||||||||||||||||||
Sbjct: 96951 ctgatatcaatgaagcatct 96932

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>ref|XM_789384.1| PREDICTED: Strongylocentrotus purpuratus similar to Ankyrin-2
           (Brain ankyrin) (Ankyrin B) (Ankyrin, nonerythroid)
           (LOC589750), mRNA
          Length = 7926

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 ctgatatcaatgaagcatct 341
           ||||||||||||||||||||
Sbjct: 680 ctgatatcaatgaagcatct 699

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>emb|AL590447.1|CNS07EGE chromosome VII of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 226576

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 522   gtcatagatgctgcagaagc 541
             ||||||||||||||||||||
Sbjct: 70280 gtcatagatgctgcagaagc 70261

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>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5
          Length = 198220

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   cacatttcaaacactagaga 205
             ||||||||||||||||||||
Sbjct: 51323 cacatttcaaacactagaga 51304

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>gb|AC166898.17| Medicago truncatula clone mth2-70l3, complete sequence
          Length = 100341

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   ttatccatatcaactgagct 172
             ||||||||||||||||||||
Sbjct: 75955 ttatccatatcaactgagct 75936

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>gb|AC183093.2| Mus musculus BAC clone RP24-107H20 from chromosome 17, complete
             sequence
          Length = 181403

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   agctgtgtggaggtacacac 188
             ||||||||||||||||||||
Sbjct: 10779 agctgtgtggaggtacacac 10798

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>gb|AC115100.3| Homo sapiens chromosome 18, clone RP11-237L15, complete sequence
          Length = 169152

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   agcatttgccctcatatctg 231
             ||||||||||||||||||||
Sbjct: 36700 agcatttgccctcatatctg 36719

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>gb|AC093882.2| Homo sapiens BAC clone RP11-658L13 from 4, complete sequence
          Length = 172346

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 481   agaaaatgggcgaagaaaatatccaaaa 508
             ||||||||| | ||||||||||||||||
Sbjct: 71510 agaaaatggactaagaaaatatccaaaa 71537

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>gb|AC091143.6| Homo sapiens chromosome 18, clone CTD-3056C12, complete sequence
          Length = 104854

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   agcatttgccctcatatctg 231
             ||||||||||||||||||||
Sbjct: 75283 agcatttgccctcatatctg 75302

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>gb|AC127520.5| Homo sapiens chromosome 15, clone RP11-825M14, complete sequence
          Length = 155382

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   ctaagaggcaatatctcaaa 451
             ||||||||||||||||||||
Sbjct: 89295 ctaagaggcaatatctcaaa 89314

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>gb|AC147963.2| Medicago truncatula chromosome 1 BAC clone mth2-42e19, complete
             sequence
          Length = 106951

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   ttatccatatcaactgagct 172
             ||||||||||||||||||||
Sbjct: 68968 ttatccatatcaactgagct 68949

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>gb|AC055715.13|AC055715 Homo sapiens 12 BAC RP11-593B8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 86800

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   gtgtggaggtacacacattt 192
             ||||||||||||||||||||
Sbjct: 68292 gtgtggaggtacacacattt 68311

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>ref|NM_059830.4| Caenorhabditis elegans INSulin related family member (ins-18)
           (ins-18) mRNA, complete cds
          Length = 432

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 103 ttggttgcaaagtggaagatctgcttgc 130
           |||||||||| ||||||||||| |||||
Sbjct: 320 ttggttgcaacgtggaagatcttcttgc 347

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>ref|XM_395392.2| PREDICTED: Apis mellifera similar to GA12250-PA (LOC411923), mRNA
          Length = 3994

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   cctgatcctgtaagagttgt 97
            ||||||||||||||||||||
Sbjct: 2232 cctgatcctgtaagagttgt 2251

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 506      aaaggctgtcaagactgtca 525
                ||||||||||||||||||||
Sbjct: 11969442 aaaggctgtcaagactgtca 11969423

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>dbj|AP006529.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1114D08
          Length = 148354

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    aaaggctgtcaagactgtca 525
              ||||||||||||||||||||
Sbjct: 100483 aaaggctgtcaagactgtca 100464

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>emb|CR352252.12| Zebrafish DNA sequence from clone CH211-181P13 in linkage group 22,
             complete sequence
          Length = 115241

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 506   aaaggctgtcaagactgtca 525
             ||||||||||||||||||||
Sbjct: 70911 aaaggctgtcaagactgtca 70930

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>emb|Z81133.1|CET28B8 Caenorhabditis elegans Cosmid T28B8, complete sequence
          Length = 33969

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 103   ttggttgcaaagtggaagatctgcttgc 130
             |||||||||| ||||||||||| |||||
Sbjct: 18574 ttggttgcaacgtggaagatcttcttgc 18601

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>emb|CT030245.8| M.truncatula DNA sequence from clone MTH2-59B18 on chromosome 3,
             complete sequence
          Length = 128436

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   ttatccatatcaactgagct 172
             ||||||||||||||||||||
Sbjct: 58705 ttatccatatcaactgagct 58686

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>gb|AC092481.28| Mus musculus strain C57BL/6J chromosome 17 clone rp23-456p8, complete
            sequence
          Length = 195988

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  agctgtgtggaggtacacac 188
            ||||||||||||||||||||
Sbjct: 8138 agctgtgtggaggtacacac 8157

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>gb|AC002468.1|AC002468 Human Chromosome 15q26.1 PAC clone pDJ417d7, complete sequence
          Length = 115888

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   ctaagaggcaatatctcaaa 451
             ||||||||||||||||||||
Sbjct: 76973 ctaagaggcaatatctcaaa 76992

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>emb|CR391944.10| Zebrafish DNA sequence from clone CH211-95K19 in linkage group 3,
              complete sequence
          Length = 172806

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     aagaaataaaattagctgac 32
              ||||||||||||||||||||
Sbjct: 122296 aagaaataaaattagctgac 122277

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>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 493     aagaaaatatccaaaaggct 512
               ||||||||||||||||||||
Sbjct: 1307425 aagaaaatatccaaaaggct 1307444

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>dbj|AB008096.1| Caenorhabditis elegans ins-1 mRNA for Ceinsulin-1, complete cds
          Length = 440

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 103 ttggttgcaaagtggaagatctgcttgc 130
           |||||||||| ||||||||||| |||||
Sbjct: 320 ttggttgcaacgtggaagatcttcttgc 347


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,644,570
Number of Sequences: 3902068
Number of extensions: 6644570
Number of successful extensions: 126801
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 126544
Number of HSP's gapped (non-prelim): 251
length of query: 629
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 606
effective length of database: 17,143,297,704
effective search space: 10388838408624
effective search space used: 10388838408624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result