ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
Clone |
Length |
Accession No. |
nt | uniprot | TIGR-ORF | RAP-ORF | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | full/ not_full | definition | hit | |||
| basd3h15 | 44 | AV836283 | full | emb|AJ277096.1|HVU277096 Hordeum vulgare mRNA for putative kinetochore protein (skp1 gene) Length = 842 | 500 | -- | --- | 0 | -- | --- | - | -- | --- | - |
| basd3h14 | 589 | AV836282 | not_full | gb|AY224488.1| Oryza sativa (japonica cultivar-group) isolate 30843 putative ubiquitin-specific protease mRNA, partial cds Length = 2529 | 55 | not_full | YQC1_SCHPO (O74463) Hypothetical protein C1739.01 in chromosome III Length = 547 | 36 | -- | --- | - | -- | --- | - |
| basd3h13 | 598 | AV836281 | not_full | ref|XM_479168.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1859 | 25 | not_full | ATG1_ASPFU (Q4WPF2) Serine/threonine-protein kinase atg1 (EC 2.7.11.1) (Autophagy-related protein 1) Length = 973 | 27 | -- | --- | - | -- | --- | - |
| basd3h12 | 563 | AV923034 | not_full | ref|XM_467797.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2063 | 26 | full | ORYC_ORYSA (P25778) Oryzain gamma chain precursor (EC 3.4.22.-) Length = 362 | 7 | -- | --- | - | -- | --- | - |
| basd3h10 | 370 | AV836280 | not_full | dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 | 8 | full | NINB_LAMBD (P03765) Protein ninB Length = 146 | 27 | -- | --- | - | -- | --- | - |
| basd3h06 | 574 | AV836279 | not_full | emb|AJ310841.1|HVU310841 Hordeum vulgare partial CA2 gene for P-type ATPase Length = 1686 | 177 | not_full | ACA1_ARATH (Q37145) Calcium-transporting ATPase 1, chloroplast precursor (EC 3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope ATPase 1) Length = 1020 | 374 | -- | --- | - | -- | --- | - |
| basd3h04 | 111 | AV836278 | not_full | dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 | 500 | -- | --- | 0 | -- | --- | - | -- | --- | - |
| basd3h03 | 543 | AV923033 | not_full | dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 | 99 | -- | --- | 0 | -- | --- | - | -- | --- | - |
| basd3h02 | 399 | AV836277 | not_full | dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 | 24 | not_full | TFP11_MOUSE (Q9ERA6) Tuftelin-interacting protein 11 (Tuftelin-interacting protein 39) Length = 838 | 173 | -- | --- | - | -- | --- | - |
| basd3h01 | 632 | AV923032 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_WHEAT (P11383) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) Length = 477 | 500 | -- | --- | - | -- | --- | - |
| basd3g24 | 563 | AV923031 | not_full | ref|NM_190764.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1995 | 364 | not_full | PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3 Length = 432 | 49 | -- | --- | - | -- | --- | - |
| basd3g23 | 614 | AV923030 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 7 | -- | --- | - | -- | --- | - |
| basd3g22 | 611 | AV923029 | not_full | ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA Length = 5910 | 126 | not_full | BGS4_SCHPO (O74475) 1,3-beta-glucan synthase component bgs4 (EC 2.4.1.34) (1,3-beta-D-glucan-UDP glucosyltransferase) Length = 1955 | 14 | -- | --- | - | -- | --- | - |
| basd3g20 | 650 | AV923028 | not_full | dbj|AK071764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110L01, full insert sequence Length = 1498 | 35 | not_full | SECG_SULTO (Q975W7) Preprotein translocase secG subunit (Protein transport protein SEC61 beta subunit homolog) Length = 58 | 6 | -- | --- | - | -- | --- | - |
| basd3g18 | 592 | AV923027 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 2 | -- | --- | - | -- | --- | - |
| basd3g15 | 156 | AV923026 | not_full | ref|NM_188605.1| Oryza sativa (japonica cultivar-group), Ozsa8208 predicted mRNA Length = 996 | 19 | not_full | BSPB_POPDE (Q09117) Bark storage protein B precursor Length = 312 | 6 | -- | --- | - | -- | --- | - |
| basd3g14 | 725 | AV923025 | not_full | gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0690B12, complete sequence Length = 135323 | 31 | not_full | STE20_CANAL (Q92212) Serine/threonine-protein kinase STE20 homolog (EC 2.7.11.1) Length = 1230 | 17 | -- | --- | - | -- | --- | - |
| basd3g13 | 572 | AV923024 | not_full | gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;2 mRNA, complete cds Length = 853 | 349 | not_full | TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrinsic protein 2.2) (OsTIP2.2) Length = 248 | 318 | -- | --- | - | -- | --- | - |
| basd3g12 | 589 | AV923023 | not_full | dbj|AK059395.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A05, full insert sequence Length = 547 | 155 | not_full | RL37A_PSEMZ (Q9ZRS8) 60S ribosomal protein L37a Length = 92 | 48 | -- | --- | - | -- | --- | - |
| basd3g11 | 616 | AV923022 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basd3g08 | 606 | AV923021 | not_full | ref|NM_190823.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 903 | 55 | not_full | DGUOK_HUMAN (Q16854) Deoxyguanosine kinase, mitochondrial precursor (EC 2.7.1.113) (dGK) Length = 277 | 44 | -- | --- | - | -- | --- | - |
| basd3g07 | 606 | AV923020 | not_full | emb|AJ222779.1|HVJ222779 Hordeum vulgare mRNA for hypothetical protein (ORF1), clone RG49 Length = 765 | 84 | not_full | RRP3_HORVU (O48609) Plastid-specific 30S ribosomal protein 3, chloroplast precursor (PSRP-3) Length = 181 | 30 | -- | --- | - | -- | --- | - |
| basd3g04 | 612 | AV923019 | not_full | gb|AY107433.1| Zea mays PCO148931 mRNA sequence Length = 1033 | 68 | not_full | MARH2_MOUSE (Q99M02) Membrane-associated RING finger protein 2 (Membrane-associated RING-CH protein II) (MARCH-II) Length = 246 | 42 | -- | --- | - | -- | --- | - |
| basd3g02 | 704 | AV923018 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basd3g01 | 585 | AV923017 | full | gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding protein WCAB precursor (Wcab) mRNA, complete cds Length = 918 | 405 | not_full | CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor (LHCII type I CAB) (LHCP) Length = 266 | 110 | -- | --- | - | -- | --- | - |
| basd3f22 | 558 | AV923016 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | DMBT1_PIG (Q4A3R3) Deleted in malignant brain tumors 1 protein precursor Length = 1204 | 5 | -- | --- | - | -- | --- | - |
| basd3f21 | 592 | AV923015 | not_full | gb|M62720.1|WHTUCP1A Wheat ubiquitin carrier protein (UBC1) mRNA, complete cds Length = 773 | 150 | not_full | UBC2_WHEAT (P25866) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) Length = 152 | 176 | -- | --- | - | -- | --- | - |
| basd3f20 | 649 | AV923014 | not_full | gb|AY162186.1| Triticum monococcum extracellular invertase (exin1) mRNA, complete cds Length = 2279 | 106 | not_full | INV7_ORYSA (Q56UC9) Beta-fructofuranosidase, insoluble isoenzyme 7 precursor (EC 3.2.1.26) (Sucrose hydrolase 7) (Invertase 7) (Cell wall beta-fructosidase 7) (OsCIN7) Length = 596 | 46 | -- | --- | - | -- | --- | - |
| basd3f19 | 604 | AV923013 | not_full | gb|AY145451.1| Hordeum vulgare actin mRNA, complete cds Length = 1421 | 500 | full | ACT7_ARATH (P53492) Actin-7 (Actin-2) Length = 377 | 417 | -- | --- | - | -- | --- | - |
| basd3f18 | 508 | AV923012 | not_full | gb|BT016226.1| Zea mays clone Contig59 mRNA sequence Length = 820 | 40 | not_full | TIM22_YEAST (Q12328) Mitochondrial import inner membrane translocase subunit TIM22 Length = 207 | 24 | -- | --- | - | -- | --- | - |
| basd3f17 | 429 | AV923011 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of white-apricot homolog 2) (Clk4-associating SR-related protein) Length = 653 | 2 | -- | --- | - | -- | --- | - |
| basd3f16 | 397 | AV836276 | not_full | gb|AC006126.1|AC006126 Homo sapiens chromosome 19, cosmid F18718, complete sequence Length = 46100 | 27 | not_full | ADH4_YEAST (P10127) Alcohol dehydrogenase 4 (EC 1.1.1.1) (Alcohol dehydrogenase IV) Length = 465 | 17 | -- | --- | - | -- | --- | - |
| basd3f15 | 613 | AV923010 | full | dbj|AK060247.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-H11, full insert sequence Length = 909 | 466 | not_full | RR12_HORVU (P48856) Chloroplast 30S ribosomal protein S12 Length = 124 | 500 | -- | --- | - | -- | --- | - |
| basd3f12 | 650 | AV923009 | not_full | gb|AY108613.1| Zea mays PCO091786 mRNA sequence Length = 597 | 500 | not_full | MST2_DROHY (Q08696) Axoneme-associated protein mst101(2) Length = 1391 | 8 | -- | --- | - | -- | --- | - |
| basd3f11 | 349 | AV923008 | full | emb|Z21510.1|TATRINF4A T.aestivum translation initiation factor 4A Length = 1715 | 441 | not_full | IF4A_WHEAT (P41378) Eukaryotic initiation factor 4A (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A) (eIF-4A) Length = 414 | 150 | -- | --- | - | -- | --- | - |
| basd3f09 | 604 | AV923007 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basd3f08 | 622 | AV923006 | not_full | emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9 Length = 875 | 415 | not_full | RBS_HORVU (Q40004) Ribulose bisphosphate carboxylase small chain, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 174 | 167 | -- | --- | - | -- | --- | - |
| basd3f07 | 594 | AV923005 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_KLULA (Q6CQE5) Protein TAR1 Length = 109 | 4 | -- | --- | - | -- | --- | - |
| basd3f06 | 584 | AV923004 | not_full | gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 | 100 | not_full | C94A1_VICSA (O81117) Cytochrome P450 94A1 (EC 1.14.-.-) (P450-dependent fatty acid omega-hydroxylase) Length = 514 | 500 | -- | --- | - | -- | --- | - |
| basd3f04 | 476 | AV923003 | full | emb|X57407.1|TAPPSBP Wheat PsbP mRNA for 23 kDa oxygen evolving protein of photosystem II Length = 967 | 133 | full | PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 | 25 | -- | --- | - | -- | --- | - |
| basd3f03 | 598 | AV923002 | not_full | gb|U84268.1|HVU84268 Hordeum vulgare vacuolar proton-translocating ATPase subunit E (Ylp) mRNA, complete cds Length = 1012 | 147 | not_full | VATE_CITLI (Q9SWE7) Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit) (CLVE-1) Length = 230 | 302 | -- | --- | - | -- | --- | - |
| basd3f01 | 598 | AV836275 | not_full | emb|CT030638.12| Mouse DNA sequence from clone RP23-340M21 on chromosome 14, complete sequence Length = 223278 | 21 | not_full | ARHG4_HUMAN (Q9NR80) Rho guanine nucleotide exchange factor 4 (APC-stimulated guanine nucleotide exchange factor) (Asef) Length = 657 | 22 | -- | --- | - | -- | --- | - |
| basd3e23 | 581 | AV923001 | not_full | gb|BT017879.1| Zea mays clone EL01N0513H12.c mRNA sequence Length = 763 | 500 | not_full | UBE2I_XENLA (P63282) Ubiquitin-conjugating enzyme E2 I (EC 6.3.2.19) (Ubiquitin-protein ligase I) (Ubiquitin carrier protein I) (SUMO-1-protein ligase) (SUMO-1-conjugating enzyme) (Ubiquitin carrier protein 9) Length = 158 | 175 | -- | --- | - | -- | --- | - |
| basd3e22 | 528 | AV923000 | not_full | gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA, complete cds; nuclear gene for chloroplast product Length = 1577 | 149 | full | ALFC_ORYSA (Q40677) Fructose-bisphosphate aldolase, chloroplast precursor (EC 4.1.2.13) (ALDP) Length = 388 | 76 | -- | --- | - | -- | --- | - |
| basd3e20 | 658 | AV922999 | not_full | emb|X00630.1|CHHV02 Barley chloroplast genes rbcL and atpB Length = 2174 | 500 | not_full | RBL_HORVU (P05698) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (Fragment) Length = 426 | 500 | -- | --- | - | -- | --- | - |
| basd3e18 | 522 | AV922998 | not_full | ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3193 | 38 | not_full | COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2 COP) Length = 871 | 18 | -- | --- | - | -- | --- | - |
| basd3e16 | 496 | AV922997 | not_full | dbj|AK063232.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-F06, full insert sequence Length = 751 | 32 | not_full | ARPC5_PONPY (Q5R516) Actin-related protein 2/3 complex subunit 5 (ARP2/3 complex 16 kDa subunit) (p16-ARC) Length = 150 | 54 | -- | --- | - | -- | --- | - |
| basd3e15 | 536 | AV922996 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 8 | -- | --- | - | -- | --- | - |
| basd3e12 | 304 | AV922995 | not_full | ref|XM_479167.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1280 | 136 | not_full | RSSA_BRANA (Q9ZSR8) 40S ribosomal protein SA (p40) (Laminin receptor-like protein) Length = 292 | 55 | -- | --- | - | -- | --- | - |
| basd3e11 | 591 | AV922994 | not_full | dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 | 500 | not_full | TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA protein 1) Length = 124 | 6 | -- | --- | - | -- | --- | - |
