Clone Name | basd3h12 |
---|---|
Clone Library Name | barley_pub |
>ORYC_ORYSA (P25778) Oryzain gamma chain precursor (EC 3.4.22.-)| Length = 362 Score = 30.4 bits (67), Expect = 3.6 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 3/88 (3%) Frame = +1 Query: 229 AVAAVLAKRPRSEDSHDAVPVDCQGSNQGYSDSSTLISSIGRDNSINCLARCS---RSDY 399 AVAA A S D+ P+ + + ST+I+++GR AR + Y Sbjct: 14 AVAATSAVAAASSGFDDSNPIRSVTDHAASALESTVIAALGRTRGALRFARFAVRHGKRY 73 Query: 400 GSIASLSRNFRSLVRDGGLYRERRRLGI 483 G A + R FR L R R G+ Sbjct: 74 GDAAEVQRRFRIFSESLELVRSTNRRGL 101
>SWD1_YEAST (P39706) COMPASS component SWD1 (Complex proteins associated with| SET1 protein SWD1) (Set1C component SWD1) Length = 426 Score = 30.0 bits (66), Expect = 4.7 Identities = 21/46 (45%), Positives = 26/46 (56%) Frame = -1 Query: 224 PSCSIARTPDGRLVLVISRRW*VI*ANLDSCSQELGSDLEIRQD*P 87 P SIA +PDGRL+L SR W + +L S+ L EIR D P Sbjct: 74 PITSIAWSPDGRLLLTSSRDWSIKLWDLSKPSKPL---KEIRFDSP 116
>IF_CANFA (Q5XWD5) Gastric intrinsic factor precursor (Intrinsic factor) (IF)| (INF) (Pancreatic intrinsic factor) Length = 417 Score = 30.0 bits (66), Expect = 4.7 Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 29/127 (22%) Frame = +1 Query: 64 ADSAGMLEGQSCLISRSLPSSCEQESRLAYMTYHLLEITRTKRPS-----------GVLA 210 +DSAG+ GQ L +L SSC + Y +E PS VLA Sbjct: 82 SDSAGLSVGQLALTIMALNSSCRDPGNKVSVLYGQMEAWPPSSPSAPAWTFYGPSLAVLA 141 Query: 211 I--EHDG--IAVAAVLAK------RPRSEDSHDAVPVDC--------QGSNQGYSDSSTL 336 + EH G + VAA LAK P + D+ V + +GS +GY TL Sbjct: 142 LCQEHPGRALPVAARLAKILAAGLSPFNTDTGAMVTLALTCMYNKIPEGSEEGY---RTL 198 Query: 337 ISSIGRD 357 S + +D Sbjct: 199 FSQVLKD 205
>U21_HHV7R (P60506) U21 glycoprotein (gp60)| Length = 430 Score = 29.3 bits (64), Expect = 8.0 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 546 TVWVICLPLLHIAGEIYPVFCNP*PPPFSVQTTITD 439 T+ + C+P+++ GE+YP FC F V T+ D Sbjct: 3 TILLFCVPVIY--GELYPDFCPLAVVDFDVNATVDD 36
>U21_HHV7J (P60505) U21 glycoprotein| Length = 430 Score = 29.3 bits (64), Expect = 8.0 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 546 TVWVICLPLLHIAGEIYPVFCNP*PPPFSVQTTITD 439 T+ + C+P+++ GE+YP FC F V T+ D Sbjct: 3 TILLFCVPVIY--GELYPDFCPLAVVDFDVNATVDD 36
>MARK1_MOUSE (Q8VHJ5) Serine/threonine-protein kinase MARK1 (EC 2.7.11.1)| (MAP/microtubule affinity-regulating kinase 1) (ELKL motif serine/threonine-protein kinase 3) Length = 795 Score = 29.3 bits (64), Expect = 8.0 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 535 HMPPTPAHCRRNIPSVLQSLTSA 467 H+PPT + R+NIP S+TSA Sbjct: 28 HIPPTKSSSRQNIPRCRNSITSA 50
>MARK1_RAT (O08678) Serine/threonine-protein kinase MARK1 (EC 2.7.11.1)| (MAP/microtubule affinity-regulating kinase 1) Length = 793 Score = 29.3 bits (64), Expect = 8.0 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 535 HMPPTPAHCRRNIPSVLQSLTSA 467 H+PPT + R+NIP S+TSA Sbjct: 28 HIPPTKSSSRQNIPRCRNSITSA 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,082,987 Number of Sequences: 219361 Number of extensions: 1794614 Number of successful extensions: 4898 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4898 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)