ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ORYC_ORYSA (P25778) Oryzain gamma chain precursor (EC 3.4.22.-) 30 3.6
2SWD1_YEAST (P39706) COMPASS component SWD1 (Complex proteins ass... 30 4.7
3IF_CANFA (Q5XWD5) Gastric intrinsic factor precursor (Intrinsic ... 30 4.7
4U21_HHV7R (P60506) U21 glycoprotein (gp60) 29 8.0
5U21_HHV7J (P60505) U21 glycoprotein 29 8.0
6MARK1_MOUSE (Q8VHJ5) Serine/threonine-protein kinase MARK1 (EC 2... 29 8.0
7MARK1_RAT (O08678) Serine/threonine-protein kinase MARK1 (EC 2.7... 29 8.0

>ORYC_ORYSA (P25778) Oryzain gamma chain precursor (EC 3.4.22.-)|
          Length = 362

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
 Frame = +1

Query: 229 AVAAVLAKRPRSEDSHDAVPVDCQGSNQGYSDSSTLISSIGRDNSINCLARCS---RSDY 399
           AVAA  A    S    D+ P+     +   +  ST+I+++GR       AR +      Y
Sbjct: 14  AVAATSAVAAASSGFDDSNPIRSVTDHAASALESTVIAALGRTRGALRFARFAVRHGKRY 73

Query: 400 GSIASLSRNFRSLVRDGGLYRERRRLGI 483
           G  A + R FR       L R   R G+
Sbjct: 74  GDAAEVQRRFRIFSESLELVRSTNRRGL 101



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>SWD1_YEAST (P39706) COMPASS component SWD1 (Complex proteins associated with|
           SET1 protein SWD1) (Set1C component SWD1)
          Length = 426

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 21/46 (45%), Positives = 26/46 (56%)
 Frame = -1

Query: 224 PSCSIARTPDGRLVLVISRRW*VI*ANLDSCSQELGSDLEIRQD*P 87
           P  SIA +PDGRL+L  SR W +   +L   S+ L    EIR D P
Sbjct: 74  PITSIAWSPDGRLLLTSSRDWSIKLWDLSKPSKPL---KEIRFDSP 116



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>IF_CANFA (Q5XWD5) Gastric intrinsic factor precursor (Intrinsic factor) (IF)|
           (INF) (Pancreatic intrinsic factor)
          Length = 417

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 29/127 (22%)
 Frame = +1

Query: 64  ADSAGMLEGQSCLISRSLPSSCEQESRLAYMTYHLLEITRTKRPS-----------GVLA 210
           +DSAG+  GQ  L   +L SSC        + Y  +E      PS            VLA
Sbjct: 82  SDSAGLSVGQLALTIMALNSSCRDPGNKVSVLYGQMEAWPPSSPSAPAWTFYGPSLAVLA 141

Query: 211 I--EHDG--IAVAAVLAK------RPRSEDSHDAVPVDC--------QGSNQGYSDSSTL 336
           +  EH G  + VAA LAK       P + D+   V +          +GS +GY    TL
Sbjct: 142 LCQEHPGRALPVAARLAKILAAGLSPFNTDTGAMVTLALTCMYNKIPEGSEEGY---RTL 198

Query: 337 ISSIGRD 357
            S + +D
Sbjct: 199 FSQVLKD 205



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>U21_HHV7R (P60506) U21 glycoprotein (gp60)|
          Length = 430

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 546 TVWVICLPLLHIAGEIYPVFCNP*PPPFSVQTTITD 439
           T+ + C+P+++  GE+YP FC      F V  T+ D
Sbjct: 3   TILLFCVPVIY--GELYPDFCPLAVVDFDVNATVDD 36



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>U21_HHV7J (P60505) U21 glycoprotein|
          Length = 430

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 546 TVWVICLPLLHIAGEIYPVFCNP*PPPFSVQTTITD 439
           T+ + C+P+++  GE+YP FC      F V  T+ D
Sbjct: 3   TILLFCVPVIY--GELYPDFCPLAVVDFDVNATVDD 36



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>MARK1_MOUSE (Q8VHJ5) Serine/threonine-protein kinase MARK1 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase 1) (ELKL
           motif serine/threonine-protein kinase 3)
          Length = 795

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 535 HMPPTPAHCRRNIPSVLQSLTSA 467
           H+PPT +  R+NIP    S+TSA
Sbjct: 28  HIPPTKSSSRQNIPRCRNSITSA 50



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>MARK1_RAT (O08678) Serine/threonine-protein kinase MARK1 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase 1)
          Length = 793

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 535 HMPPTPAHCRRNIPSVLQSLTSA 467
           H+PPT +  R+NIP    S+TSA
Sbjct: 28  HIPPTKSSSRQNIPRCRNSITSA 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,082,987
Number of Sequences: 219361
Number of extensions: 1794614
Number of successful extensions: 4898
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4898
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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