ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3h13 |
|---|---|
| Clone Library Name | barley_pub |
>ATG1_ASPFU (Q4WPF2) Serine/threonine-protein kinase atg1 (EC 2.7.11.1)| (Autophagy-related protein 1) Length = 973 Score = 34.3 bits (77), Expect = 0.28 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +3 Query: 21 RIGTPFNFFPLPSLPANGRNPPQSPRRTLPPTTIASKPSCPRRSGAP 161 R GTP P+ + +G PP +P+ + PP T +PS + AP Sbjct: 398 RFGTPQTTTPMRRI-GSGDRPPSTPKESTPPMTYPQRPSAVSHATAP 443
>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100| Length = 1038 Score = 32.7 bits (73), Expect = 0.81 Identities = 18/39 (46%), Positives = 20/39 (51%) Frame = +3 Query: 27 GTPFNFFPLPSLPANGRNPPQSPRRTLPPTTIASKPSCP 143 G PF FP P P +NPPQ P PP T+A S P Sbjct: 107 GAPFQRFPSPPFPTT-QNPPQGPP---PPQTLAGHLSPP 141
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 32.7 bits (73), Expect = 0.81 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = +2 Query: 8 RAACPHRYSLQLLPPSIFAGERKE---PTPIPTPDASPHDDRLQTLLPPP 148 R PH PPSI A + P P+PTP A P + Q L PPP Sbjct: 838 RTPTPHH-----TPPSIGAQQPPATTIPAPVPTPPAMPPGPQSQALHPPP 882
>ZN575_MOUSE (Q3TXZ1) Zinc finger protein 575| Length = 239 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = +3 Query: 33 PFNFFPLPSLPANGRNPPQSPRRTLPPTTIASKPSCPRRSGAPRGLSVSLL 185 P P P+ PA + P PRR PP P CP+ P L+ L Sbjct: 27 PHQDLPRPNQPAASGSVPSRPRRRPPPQRPHRCPDCPKAFSYPSKLATHRL 77
>GLGA_RHORT (Q2RS50) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 485 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/65 (24%), Positives = 34/65 (52%) Frame = +1 Query: 208 LHDSMETPNDLMSYSSLSKINSYHSQAGPMSDLAPGNTYPVHDYLYEPSLEPDFPSEYGA 387 ++ ++ P++ ++ LSK+ + AG + D P +H + ++ L P + + +GA Sbjct: 101 MYSGVDWPDNFRRFALLSKVAAMIGTAGDLMDWRPD---VLHGHDWQTGLVPAYLNAWGA 157 Query: 388 REDPF 402 R PF Sbjct: 158 RRPPF 162
>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 1002 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +3 Query: 48 PLPSLPANGRNPPQSPRRTLPPTTIASKPSCPRRSGAPRGLS 173 P+PS+P PP S L P +A P+ SGAP GL+ Sbjct: 228 PVPSVPPMTTLPPMSGMPPLNPPPVAPLPAGMNGSGAPIGLN 269
>IF2_DESVH (Q72ER1) Translation initiation factor IF-2| Length = 1079 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -1 Query: 169 RPLGAPDRRGQEGLEAIVVGGSVRRGDWGGF---LPFAGKDGRGKKLKGVPMRARRT 8 RP G P R G G+ R G +GG +P G DGRG + K + RRT Sbjct: 407 RPAGGPPRPG----------GAPRPGGFGGAPGGMPVPGADGRGDQSKKKRQKGRRT 453
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 31.2 bits (69), Expect = 2.4 Identities = 16/44 (36%), Positives = 18/44 (40%) Frame = +3 Query: 33 PFNFFPLPSLPANGRNPPQSPRRTLPPTTIASKPSCPRRSGAPR 164 PF FFP P P + PP +PP PR S PR Sbjct: 1037 PFPFFPEPRAPES--EPPHHEPPYIPPAVCIGHRDAPRASSPPR 1078
>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 30.8 bits (68), Expect = 3.1 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +3 Query: 48 PLPSLPANGRNPPQSPRRTLPPTTIASKPSCPRRSGAPRGLSVSL 182 P+PS+P PP S L P +A P+ SGAP L+ +L Sbjct: 228 PVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNL 272
>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 30.8 bits (68), Expect = 3.1 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +3 Query: 48 PLPSLPANGRNPPQSPRRTLPPTTIASKPSCPRRSGAPRGLSVSL 182 P+PS+P PP S L P +A P+ SGAP L+ +L Sbjct: 228 PVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNL 272
>PANC_CHLTE (Q8KBY5) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate| synthetase) (Pantoate-activating enzyme) Length = 284 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +1 Query: 334 DYLYEPSLEPDFPSEYGAREDPFPTAQASSTINLKTVLGGLAAIV 468 DYL+ PS E +P Y DP P A + GG+ +V Sbjct: 88 DYLFAPSTEAMYPDGYSTSIDPGPIATRFEGASRPGHFGGMVTVV 132
>CAC1H_MOUSE (O88427) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2365 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 9/53 (16%) Frame = +2 Query: 8 RAACPHRYSLQLLPPSIFAGERKEP---------TPIPTPDASPHDDRLQTLL 139 RA YSL + P G P TP+PTP +SPH D TLL Sbjct: 1046 RATEMKMYSLAVTPNGHLEGRGSLPPPLITHTAATPMPTPKSSPHLDMAHTLL 1098
>WASP_MOUSE (P70315) Wiskott-Aldrich syndrome protein homolog (WASp)| Length = 520 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Frame = +3 Query: 48 PLPSLPANGRNPPQSPRRTLPPTTIASKPSCP---RRSGAP 161 PLP +P G PP +PR PP P P RSG P Sbjct: 358 PLPPVPMGGAPPPPTPRGPPPPGRGGPPPPPPPATGRSGPP 398
>LFC_TACTR (P28175) Limulus clotting factor C precursor (EC 3.4.21.84) (FC)| [Contains: Limulus clotting factor C heavy chain; Limulus clotting factor C light chain; Limulus clotting factor C chain A; Limulus clotting factor C chain B] Length = 1019 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +3 Query: 18 ARIGTPFNFFPLPSLP-ANGRNPPQSPRRTLPPTT-IASKPSCP 143 +R+G+PF P LP A PP PR + P T +ASK P Sbjct: 663 SRVGSPFLRLPRLPLPLARAAKPPPKPRSSQPSTVDLASKVKLP 706
>LFC_CARRO (Q26422) Limulus clotting factor C precursor (EC 3.4.21.84) (FC)| [Contains: Limulus clotting factor C heavy chain; Limulus clotting factor C light chain; Limulus clotting factor C chain A; Limulus clotting factor C chain B] Length = 1019 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +3 Query: 18 ARIGTPFNFFPLPSLP-ANGRNPPQSPRRTLPPTT-IASKPSCP 143 +R+G+PF P LP A PP PR + P T +ASK P Sbjct: 663 SRVGSPFLRLPRLPLPLARAAKPPPKPRSSQPSTVDLASKVKLP 706
>PPNK2_SYNP6 (Q5MZV1) Probable inorganic polyphosphate/ATP-NAD kinase 2 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 2) Length = 306 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Frame = +1 Query: 382 GAREDPFPTAQASST--INLKTVLGGLAAIVSRPSKIGD 492 GAR++PFP AS+T I+L VLGG +++ + D Sbjct: 41 GARDNPFPVFLASATEPIDLAIVLGGDGTVLAAARHLSD 79
>ZN553_HUMAN (Q96MX3) Zinc finger protein 553| Length = 618 Score = 30.4 bits (67), Expect = 4.0 Identities = 19/42 (45%), Positives = 20/42 (47%) Frame = +3 Query: 45 FPLPSLPANGRNPPQSPRRTLPPTTIASKPSCPRRSGAPRGL 170 FP LPA +PP P T PP T P P SG P GL Sbjct: 389 FPGYPLPALIPSPPPPPLGTSPPLT----PRSPSHSGEPFGL 426
>AKAP6_RAT (Q9WVC7) A-kinase anchor protein 6 (Protein kinase A-anchoring| protein 6) (PRKA6) (mAKAP) Length = 2314 Score = 30.4 bits (67), Expect = 4.0 Identities = 22/68 (32%), Positives = 32/68 (47%) Frame = +1 Query: 346 EPSLEPDFPSEYGAREDPFPTAQASSTINLKTVLGGLAAIVSRPSKIGDDASRQQSFSTD 525 + SL D E+G P P Q ST+ + ++ G LA PS + ++Q S S+ Sbjct: 297 QASLSDDHKGEHGEDGAPVPGQQLDSTVGMSSLDGTLANAAEHPS----ETAKQDSTSSP 352 Query: 526 VSFLGAGK 549 LGA K Sbjct: 353 Q--LGAKK 358
>3BP2_HUMAN (P78314) SH3 domain-binding protein 2 (3BP-2)| Length = 561 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = +3 Query: 48 PLPSLPANGRNPPQSPRRTLPPTTIASKPSCPRRSGAP 161 P P +PA R P T+P KP C R S +P Sbjct: 266 PCPRVPATPRRMSDPPLSTMPTAPGLRKPPCFRESASP 303
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 54 PSLPANGRNPPQSPRRTLPPTTIASKPSCPRRSGAP 161 PS P +PP + TLPPTT S P+ + P Sbjct: 1399 PSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPP 1434
>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 487 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Frame = +3 Query: 45 FPLPSLPANGRNPPQSPRRTLPP--TTIASKPSC--PRRSGAPRGLSVSL 182 FP PS P + PP+ PR +PP + SKP P PR + SL Sbjct: 146 FPAPS-PGHRSGPPEPPRNRMPPPRPDVGSKPDSLPPPVPNTPRPIPSSL 194
>IF2_SYNEL (Q8DK04) Translation initiation factor IF-2| Length = 957 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Frame = +3 Query: 48 PLPSL--PANGRNPPQSPRRTLPPTTIASKPSCPRRSGAP 161 P P L P PPQ+P R PP +A KP P + P Sbjct: 99 PKPQLQKPPARPQPPQAPTRPTPPAPVAPKPVEPVAAKPP 138
>CORTO_DROME (P41046) Centrosomal and chromosomal factor (CCF)| (Chromocentrosomin) Length = 550 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = -1 Query: 586 HSERRQMNASHHPCQRLEMIHLC*NFAAVMHHPQSCLDAKQSQQDH 449 HS+ +Q + HH Q+ M H AAV H Q L +Q QQ H Sbjct: 36 HSQTQQQH--HHQQQQQHMYH-----AAVAAHQQQLLQQQQQQQHH 74
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = +3 Query: 18 ARIGTPFNFFPLPSLPANGRNPPQSPRRTLPPTTIASKPSCPRRSGAPRGLSVSLLITYM 197 A++G + P+ ++PA NP + R P + P P G P+ SL++T Sbjct: 1096 AKMGNSTDPGPMLAIPAMATNPQNAASRRTP-----NNPGNPSNPGPPKTPENSLIVTNP 1150 Query: 198 SAVST 212 S T Sbjct: 1151 SGTQT 1155
>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 493 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Frame = +3 Query: 45 FPLPSLPANGRNPPQSPRRTLPP--TTIASKPSC--PRRSGAPRGLSVSL 182 FP PS P + PP+ PR +PP + SKP P PR + SL Sbjct: 151 FPAPS-PGHRSGPPEPPRNRMPPPRPDVGSKPDSLPPPVPNTPRPVPSSL 199
>ABP1_SACEX (P38479) Actin-binding protein| Length = 617 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +3 Query: 48 PLPSLPANGRNPPQSPRRTLPPTTIASK 131 P PSLP+ G PP P+R + P A++ Sbjct: 531 PAPSLPSRGSVPPPPPQRAVEPEEPAAE 558
>CJ078_MOUSE (Q8BP27) Protein C10orf78 homolog| Length = 319 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/37 (35%), Positives = 16/37 (43%) Frame = +3 Query: 54 PSLPANGRNPPQSPRRTLPPTTIASKPSCPRRSGAPR 164 P+ P NPP P P T + PS P AP+ Sbjct: 40 PAAPQTSENPPSPPTSPAVPQTRENPPSPPTSPAAPQ 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,840,706 Number of Sequences: 219361 Number of extensions: 2068499 Number of successful extensions: 8358 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 7029 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8224 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
