ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3h10 |
|---|---|
| Clone Library Name | barley_pub |
>NINB_LAMBD (P03765) Protein ninB| Length = 146 Score = 32.0 bits (71), Expect = 0.38 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 172 TLALASPAVPQNAREALYQALPPRIKPVLHT--QLRRRFPHGEKQTMTVAEVRAEMDGVL 345 T + SPA QNA A+ Q LP KP++ T + R K + +V +++ Sbjct: 5 TFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVEWHG 64 Query: 346 RWL 354 RWL Sbjct: 65 RWL 67
>NINB_ECOL6 (P68651) P21 prophage-derived protein ninB| Length = 146 Score = 32.0 bits (71), Expect = 0.38 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 172 TLALASPAVPQNAREALYQALPPRIKPVLHT--QLRRRFPHGEKQTMTVAEVRAEMDGVL 345 T + SPA QNA A+ Q LP KP++ T + R K + +V +++ Sbjct: 5 TFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVEWHG 64 Query: 346 RWL 354 RWL Sbjct: 65 RWL 67
>NINB_BPP21 (P68652) Protein ninB| Length = 146 Score = 32.0 bits (71), Expect = 0.38 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 172 TLALASPAVPQNAREALYQALPPRIKPVLHT--QLRRRFPHGEKQTMTVAEVRAEMDGVL 345 T + SPA QNA A+ Q LP KP++ T + R K + +V +++ Sbjct: 5 TFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVEWHG 64 Query: 346 RWL 354 RWL Sbjct: 65 RWL 67
>NINB_BPP22 (Q38662) Protein ninB| Length = 145 Score = 31.6 bits (70), Expect = 0.49 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 172 TLALASPAVPQNAREALYQALPPRIKPVLHT--QLRRRFPHGEKQTMTVAEVRAEMDGVL 345 T + SPA QNA A+ Q LP KP++ T + R K + +V +++ Sbjct: 5 TFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVNWHG 64 Query: 346 RWL 354 RWL Sbjct: 65 RWL 67
>RSC30_YEAST (P38781) Chromatin structure remodeling complex protein RSC30| (Remodel the structure of chromatin complex subunit 30) Length = 883 Score = 30.8 bits (68), Expect = 0.84 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = +2 Query: 131 DSRCIMPMLFCS*KLWHWHHRRFLKMLGRLYTKHCLLGSNQFCIPNCGGVSPMEKS 298 D C++ KL+H FLK + Y++H LLG + F +P +SP+ S Sbjct: 495 DLSCLLSFQIKDFKLFH-----FLKKM--YYSRHSLLGQSSFMVPAAENLSPIPAS 543
>GATA_BRAJA (Q89K29) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 491 Score = 28.9 bits (63), Expect = 3.2 Identities = 24/88 (27%), Positives = 32/88 (36%) Frame = -3 Query: 326 ALTSATVMVCFSPWGKRRRSWVCRTGLIRGGSAWYKASRAF*GTAGDANAKVFSCKITLA 147 A+ SA CF P G R T L+ GGS+ G + A A + T Sbjct: 127 AMGSANETSCFGPVGNPWRREGSNTTLVPGGSS---------GGSASAVAALLCMGATAT 177 Query: 146 *CNASPVGPNVFARLLGMRSAPHDCSAW 63 S P F +G++ CS W Sbjct: 178 DTGGSIRQPAAFTATVGIKPTYGRCSRW 205
>CET1_ASHGO (Q755F7) mRNA capping enzyme beta subunit (EC 3.1.3.33)| (Polynucleotide 5'-triphosphatase) (mRNA 5'-triphosphatase) (TPase) Length = 478 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/56 (25%), Positives = 31/56 (55%) Frame = +1 Query: 169 KTLALASPAVPQNAREALYQALPPRIKPVLHTQLRRRFPHGEKQTMTVAEVRAEMD 336 + L+L+ +++++A +KP+ + ++RRR H + + TV++V E D Sbjct: 12 RVLSLSDLVNREDSKDASGNTAGAALKPLSNDEVRRRLAHEDYSSNTVSQVDDETD 67
>MESD_LEUME (Q10418) Mesentericin Y105 transport/processing ATP-binding protein| mesD (EC 3.4.22.-) Length = 722 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +1 Query: 94 IPNNLAKTLGPTGLALHYANVILQLKTLA 180 IPNN+ TLG L L +A VI QL + A Sbjct: 202 IPNNMKNTLGIVSLGLIFAYVIQQLLSYA 230
>OXAA_SYNPX (Q7U522) Inner membrane protein oxaA| Length = 380 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = +1 Query: 124 PTGLALHY--ANVILQLKTLALASPAVPQNAREALYQALPPRIKPVLHT 264 P G+ L+ AN+ L+T L A+P+N ++ L Q + + PV T Sbjct: 315 PAGVLLYMVIANIFQALQTFLLTREALPENLQKILDQQMTQQTVPVTAT 363
>ATM_DROME (Q5EAK6) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Telomere| fusion protein) Length = 2767 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 199 PQNAREALYQALPPRIKPVLHTQLRRRFP 285 P+ R A+Y+ + IKPV H L +FP Sbjct: 2546 PKETRYAIYKKICENIKPVFHYFLLEKFP 2574
>MTGA_SHEON (Q8EB02) Monofunctional biosynthetic peptidoglycan transglycosylase| (EC 2.4.2.-) (Monofunctional TGase) Length = 233 Score = 28.1 bits (61), Expect = 5.5 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Frame = +3 Query: 129 WTRVALCQCYFAAKNFGIGITGGSSKCSGGFIPSTASSDQTSSAYPTAAAFPPWR-KADH 305 W + + + Y FG GI G + F S A + ++ AA PWR K Sbjct: 143 WDKARILEVYLNIVEFGPGIYGAEAASKHYFGKSAAKLTRYEASLLAAALPNPWRYKVSP 202 Query: 306 DGSRGES*NGW 338 S E + W Sbjct: 203 PSSYVEQRSAW 213
>G6PI2_PSEPK (Q88DW7) Glucose-6-phosphate isomerase 2 (EC 5.3.1.9) (GPI 2)| (Phosphoglucose isomerase 2) (PGI 2) (Phosphohexose isomerase 2) (PHI 2) Length = 554 Score = 27.7 bits (60), Expect = 7.1 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%) Frame = +1 Query: 115 TLGPTGLALHYA-NVILQLKTLALASPAVPQNAREALYQALPPRI------KPVLHTQLR 273 +L GL L Y+ N+I + L + A ++A+ I +PVLHT LR Sbjct: 46 SLSACGLFLDYSKNLITEQSRDLLVNLANEVGLQDAIKSMFSGEIINASEGRPVLHTALR 105 Query: 274 RRFPHGEKQTMTVAEVRAEMDGVL 345 R P G+K ++ V E+ VL Sbjct: 106 R--PVGDKLSVNGVNVMPEVHKVL 127
>G6PI1_PSEPK (Q88LW9) Glucose-6-phosphate isomerase 1 (EC 5.3.1.9) (GPI 1)| (Phosphoglucose isomerase 1) (PGI 1) (Phosphohexose isomerase 1) (PHI 1) Length = 554 Score = 27.7 bits (60), Expect = 7.1 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%) Frame = +1 Query: 115 TLGPTGLALHYA-NVILQLKTLALASPAVPQNAREALYQALPPRI------KPVLHTQLR 273 +L GL L Y+ N+I + L + A ++A+ I +PVLHT LR Sbjct: 46 SLSACGLFLDYSKNLITEQSRDLLVNLANEVGLQDAIKSMFSGEIINASEGRPVLHTALR 105 Query: 274 RRFPHGEKQTMTVAEVRAEMDGVL 345 R P G+K ++ V E+ VL Sbjct: 106 R--PVGDKLSVNGVNVMPEVHKVL 127
>ALA6_ARATH (Q9SLK6) Putative phospholipid-transporting ATPase 6 (EC 3.6.3.1)| (Aminophospholipid flippase 6) Length = 1244 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = +3 Query: 117 IRTHWT--RVALCQCYFAAKNFGIGITGGSSKCSGGFIPSTASSD 245 + HW R+A CYF KN G+T +C GF + +D Sbjct: 937 VHGHWCYKRIAQMICYFFYKNITFGLTLFYFECFTGFSGQSIYND 981
>S12A1_RAT (P55016) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (Kidney-specific Na-K-Cl symporter) Length = 1095 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -3 Query: 269 SWVCRTGLIRGGSAWYKASRAF*GTAGDANAKVF 168 S +C G++RGG A+Y SR+ G + +F Sbjct: 227 SAICTNGVVRGGGAYYLISRSLGPEFGGSIGLIF 260
>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC| 2.7.7.6) (MtRPOL) Length = 1230 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +1 Query: 181 LASPAVPQNAREALYQALPPRIKPVLHTQLRRRFPHGEKQTMTVAEVRAE 330 L PA P A + LP P +LRR H +K + +RAE Sbjct: 729 LGVPAPPSEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAE 778
>HISX_BURS3 (Q39K91) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 438 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +1 Query: 139 LHYANVILQLKTLALASPAVPQNAREALYQALPPRIKPVLHTQLRRRFPHGEKQ 300 L Y N +L ++A+ +PQ+A + +L P+ + L R + EKQ Sbjct: 53 LEYTNRFDRLSASSIAALELPQDALQTALDSLAPKARAALEAAAARVRAYHEKQ 106
>ILVD1_AZOSE (Q5P8J4) Dihydroxy-acid dehydratase 1 (EC 4.2.1.9) (DAD 1)| Length = 567 Score = 27.7 bits (60), Expect = 7.1 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 9/88 (10%) Frame = +1 Query: 7 FVEIGDFIHHEINSAFLENHAEQ------SCGALRIPNNLAKTLGPTGLALHYANVILQL 168 F +G+FI +++ + ++ SCG + N ++ G++L Y++ + Sbjct: 172 FEAVGEFIAGQLDPVDFKEIEKRACPGSGSCGGMYTANTMSAAFEALGMSLPYSSTMANE 231 Query: 169 KTLALASPAVPQNAR---EALYQALPPR 243 LAS A ++AR EA+ + L PR Sbjct: 232 DAEKLASAA--ESARVLVEAIKRGLRPR 257
>DLDH_CHLVI (O50311) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) Length = 469 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = +1 Query: 82 GALRIPNNLAKTLGPTGLALHYANVILQLKTLALASPAVPQNAREALYQALP 237 G I ++ + +G GLA Y L A P + + REA + ALP Sbjct: 415 GGHLIGHDAVELIGELGLACRYGVTAEGLVGTVHAHPTLSETVREAAFSALP 466
>TOCC_MAIZE (Q94FY8) Probable tocopherol cyclase, chloroplast precursor| (Sucrose export defective 1) Length = 474 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 207 CSGGFIPSTASSDQTSSAYPTAAAFPPWRKADHDGS 314 C G +P ASS +S P+AAA P + D S Sbjct: 28 CPRGVVPRAASSSVSSFTSPSAAAAPIYTPTPQDRS 63
>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein| kinase with no lysine 1) (Protein kinase, lysine-deficient 1) (Kinase deficient protein) Length = 2382 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%) Frame = +1 Query: 94 IPNNLAKTLGP-TGLALHYANVILQLKTLALASPA-------VPQNAREALYQALPPRIK 249 +P+ L L P T L +LQ ++ PA VP ++ + LYQ PPR+ Sbjct: 892 VPSQLPTLLQPVTQLPSQVHPQLLQPAVQSMGIPANLGQAAEVPLSSGDVLYQGFPPRLP 951 Query: 250 P 252 P Sbjct: 952 P 952
>SCR_DROME (P09077) Homeotic protein Sex combs reduced| Length = 417 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 10/51 (19%) Frame = +3 Query: 165 AKNFGIGITGGSSKCSGGFIPSTASSDQTSSA----------YPTAAAFPP 287 A N G +GG + SGG +PS ++ SA +P AAA+ P Sbjct: 34 AGNSSAGGSGGGAGGSGGVVPSGGTNGGQGSAGAATPGANDYFPAAAAYTP 84
>ITBA1_HUMAN (Q14656) Protein ITBA1 (CXorf12 protein) (DXS9878E)| Length = 261 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Frame = -1 Query: 310 PSWS-AFLH----GGNAAAVGYAELV*SEEAVLGIKPPEHFEEPPVMPMPKFLA 164 P W AF+H GG A + + S +G EH+ E PV +P FLA Sbjct: 3 PEWGQAFVHVAVAGGLCAVAVFTGIFDSVSVQVGY---EHYAEAPVAGLPAFLA 53
>HISX_BURPS (Q63Q86) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 445 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +1 Query: 139 LHYANVILQLKTLALASPAVPQNAREALYQALPPRIKPVLHTQLRRRFPHGEKQ 300 L Y N +L ++A+ +PQ+ EA + L P+ + L R + EKQ Sbjct: 53 LDYTNRFDRLNAASVAALELPQSELEAALEGLEPKRRAALEAAAARVRGYHEKQ 106
>HISX_BURP1 (Q3JMZ6) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 445 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +1 Query: 139 LHYANVILQLKTLALASPAVPQNAREALYQALPPRIKPVLHTQLRRRFPHGEKQ 300 L Y N +L ++A+ +PQ+ EA + L P+ + L R + EKQ Sbjct: 53 LDYTNRFDRLNAASVAALELPQSELEAALEGLEPKRRAALEAAAARVRGYHEKQ 106
>HISX_BURMA (Q62GD9) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 445 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +1 Query: 139 LHYANVILQLKTLALASPAVPQNAREALYQALPPRIKPVLHTQLRRRFPHGEKQ 300 L Y N +L ++A+ +PQ+ EA + L P+ + L R + EKQ Sbjct: 53 LDYTNRFDRLNAASVAALELPQSELEAALEGLEPKRRAALEAAAARVRGYHEKQ 106
>GAK_HUMAN (O14976) Cyclin G-associated kinase (EC 2.7.11.1)| Length = 1311 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 6/34 (17%) Frame = +3 Query: 213 GGFIPSTASSDQTSSAYPTA------AAFPPWRK 296 GGFIP TA++ + SS++ T+ A++PP K Sbjct: 1103 GGFIPKTATTPKGSSSWQTSRPPAQGASWPPQAK 1136 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,384,414 Number of Sequences: 219361 Number of extensions: 1338994 Number of successful extensions: 3869 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3755 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3867 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
