Clone Name | basd3h10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 10 gtagagatcggggacttcatccatca 35 ||||||||||||||| |||||||||| Sbjct: 2846127 gtagagatcggggacctcatccatca 2846102
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 10 gtagagatcggggacttcatccatca 35 ||||||||||||||| |||||||||| Sbjct: 2846071 gtagagatcggggacctcatccatca 2846046
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 10 gtagagatcggggacttcatccatca 35 ||||||||||||||| |||||||||| Sbjct: 24320 gtagagatcggggacctcatccatca 24345
>emb|Z29560.1|CEK03H1 Caenorhabditis elegans Cosmid K03H1, complete sequence Length = 34583 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 cgttgcattatgccaatgtt 156 |||||||||||||||||||| Sbjct: 12225 cgttgcattatgccaatgtt 12244
>ref|NM_066804.2| Caenorhabditis elegans K03H1.5 (K03H1.5) mRNA, complete cds Length = 4275 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 cgttgcattatgccaatgtt 156 |||||||||||||||||||| Sbjct: 1534 cgttgcattatgccaatgtt 1553
>gb|AC154296.2| Mus musculus BAC clone RP23-424C4 from chromosome 9, complete sequence Length = 194303 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 taaaaactttggcattggca 186 |||||||||||||||||||| Sbjct: 134824 taaaaactttggcattggca 134843
>emb|AL136000.4|CNS01DVQ Human chromosome 14 DNA sequence BAC R-860P2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 201587 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggcggttcctcaaaatgctc 211 |||||||||||||||||||| Sbjct: 49367 ggcggttcctcaaaatgctc 49348
>emb|AL805910.7| Mouse DNA sequence from clone RP23-144K17 on chromosome 4, complete sequence Length = 200933 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gcagaggtgagagctgaaat 332 |||||||||||||||||||| Sbjct: 138961 gcagaggtgagagctgaaat 138942 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,274,883 Number of Sequences: 3902068 Number of extensions: 3274883 Number of successful extensions: 48438 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48378 Number of HSP's gapped (non-prelim): 60 length of query: 370 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 348 effective length of database: 17,147,199,772 effective search space: 5967225520656 effective search space used: 5967225520656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)