Clone Name | basd3g14 |
---|---|
Clone Library Name | barley_pub |
>gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0690B12, complete sequence Length = 135323 Score = 220 bits (111), Expect = 5e-54 Identities = 394/487 (80%), Gaps = 6/487 (1%) Strand = Plus / Plus Query: 80 agtgtcagttctagttctggtcgaacagaaactggtcgaagcttcgggaatggtcgcgtg 139 |||||||||||||||||||| ||| |||| |||| | ||||| || ||||| || ||| Sbjct: 133467 agtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtg 133526 Query: 140 cttgagcaattgtcttttcctccacttcaagaccaggatattcctgatgctaggatggat 199 |||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 133527 tttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggac 133586 Query: 200 gccattccctatgaaacctcgtttcctcccgtctcagagcagcaatcaaggtatgcgctg 259 | ||| |||||||||| || ||| || |||||||||||||| | || ||||| | Sbjct: 133587 tctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcat 133646 Query: 260 gctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatcattattccctcca 319 ||||||| |||||| || | |||| | |||||| ||||| | ||||||||||||| Sbjct: 133647 gctcttagtcagagttcccttg---ctgccaagcttggggatgagttattattccctcca 133703 Query: 320 ttgcctgggtcaagtaacaa---gggttctgcttcaacacaacaggggctgcaaagtctt 376 | ||||||||||||| ||| ||||||| ||||||| ||||||||||| |||||||| Sbjct: 133704 ctacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtcta 133763 Query: 377 gctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcaccgtgaaggtacta 436 || |||||||||||||||||||||||||| || ||||| ||||||| ||||| ||||| Sbjct: 133764 gcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtactt 133823 Query: 437 tattctgctcggtctcaaacagctgaaaatcctgagatagtacctcatgtttccacttcc 496 ||||||| ||| ||| || ||||||||||||| ||| |||| |||||| | |||| Sbjct: 133824 cattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttcc 133883 Query: 497 acccagacatggcctaaacctgaccaggggctacatctttctggttcttctcaacttcgg 556 | |||| ||||||| |||||| |||||||| | || |||| ||||||| || ||||| Sbjct: 133884 ccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcga 133943 Query: 557 attgtaa 563 ||||||| Sbjct: 133944 attgtaa 133950 Score = 46.1 bits (23), Expect = 0.16 Identities = 53/63 (84%) Strand = Plus / Plus Query: 627 gagcttcaaacaagatgaagcactctacatcgacccctaattttgtttctggtggatcct 686 |||||||||||| ||||||||||||| || || |||||| || | |||||||| |||| Sbjct: 134002 gagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcct 134061 Query: 687 ctg 689 ||| Sbjct: 134062 ctg 134064
>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12, complete sequence Length = 139627 Score = 220 bits (111), Expect = 5e-54 Identities = 394/487 (80%), Gaps = 6/487 (1%) Strand = Plus / Plus Query: 80 agtgtcagttctagttctggtcgaacagaaactggtcgaagcttcgggaatggtcgcgtg 139 |||||||||||||||||||| ||| |||| |||| | ||||| || ||||| || ||| Sbjct: 8408 agtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtg 8467 Query: 140 cttgagcaattgtcttttcctccacttcaagaccaggatattcctgatgctaggatggat 199 |||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 8468 tttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggac 8527 Query: 200 gccattccctatgaaacctcgtttcctcccgtctcagagcagcaatcaaggtatgcgctg 259 | ||| |||||||||| || ||| || |||||||||||||| | || ||||| | Sbjct: 8528 tctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcat 8587 Query: 260 gctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatcattattccctcca 319 ||||||| |||||| || | |||| | |||||| ||||| | ||||||||||||| Sbjct: 8588 gctcttagtcagagttcccttg---ctgccaagcttggggatgagttattattccctcca 8644 Query: 320 ttgcctgggtcaagtaacaa---gggttctgcttcaacacaacaggggctgcaaagtctt 376 | ||||||||||||| ||| ||||||| ||||||| ||||||||||| |||||||| Sbjct: 8645 ctacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtcta 8704 Query: 377 gctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcaccgtgaaggtacta 436 || |||||||||||||||||||||||||| || ||||| ||||||| ||||| ||||| Sbjct: 8705 gcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtactt 8764 Query: 437 tattctgctcggtctcaaacagctgaaaatcctgagatagtacctcatgtttccacttcc 496 ||||||| ||| ||| || ||||||||||||| ||| |||| |||||| | |||| Sbjct: 8765 cattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttcc 8824 Query: 497 acccagacatggcctaaacctgaccaggggctacatctttctggttcttctcaacttcgg 556 | |||| ||||||| |||||| |||||||| | || |||| ||||||| || ||||| Sbjct: 8825 ccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcga 8884 Query: 557 attgtaa 563 ||||||| Sbjct: 8885 attgtaa 8891 Score = 46.1 bits (23), Expect = 0.16 Identities = 53/63 (84%) Strand = Plus / Plus Query: 627 gagcttcaaacaagatgaagcactctacatcgacccctaattttgtttctggtggatcct 686 |||||||||||| ||||||||||||| || || |||||| || | |||||||| |||| Sbjct: 8943 gagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcct 9002 Query: 687 ctg 689 ||| Sbjct: 9003 ctg 9005
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 220 bits (111), Expect = 5e-54 Identities = 394/487 (80%), Gaps = 6/487 (1%) Strand = Plus / Plus Query: 80 agtgtcagttctagttctggtcgaacagaaactggtcgaagcttcgggaatggtcgcgtg 139 |||||||||||||||||||| ||| |||| |||| | ||||| || ||||| || ||| Sbjct: 11563973 agtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtg 11564032 Query: 140 cttgagcaattgtcttttcctccacttcaagaccaggatattcctgatgctaggatggat 199 |||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 11564033 tttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggac 11564092 Query: 200 gccattccctatgaaacctcgtttcctcccgtctcagagcagcaatcaaggtatgcgctg 259 | ||| |||||||||| || ||| || |||||||||||||| | || ||||| | Sbjct: 11564093 tctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcat 11564152 Query: 260 gctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatcattattccctcca 319 ||||||| |||||| || | |||| | |||||| ||||| | ||||||||||||| Sbjct: 11564153 gctcttagtcagagttcccttg---ctgccaagcttggggatgagttattattccctcca 11564209 Query: 320 ttgcctgggtcaagtaacaa---gggttctgcttcaacacaacaggggctgcaaagtctt 376 | ||||||||||||| ||| ||||||| ||||||| ||||||||||| |||||||| Sbjct: 11564210 ctacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtcta 11564269 Query: 377 gctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcaccgtgaaggtacta 436 || |||||||||||||||||||||||||| || ||||| ||||||| ||||| ||||| Sbjct: 11564270 gcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtactt 11564329 Query: 437 tattctgctcggtctcaaacagctgaaaatcctgagatagtacctcatgtttccacttcc 496 ||||||| ||| ||| || ||||||||||||| ||| |||| |||||| | |||| Sbjct: 11564330 cattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttcc 11564389 Query: 497 acccagacatggcctaaacctgaccaggggctacatctttctggttcttctcaacttcgg 556 | |||| ||||||| |||||| |||||||| | || |||| ||||||| || ||||| Sbjct: 11564390 ccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcga 11564449 Query: 557 attgtaa 563 ||||||| Sbjct: 11564450 attgtaa 11564456 Score = 46.1 bits (23), Expect = 0.16 Identities = 53/63 (84%) Strand = Plus / Plus Query: 627 gagcttcaaacaagatgaagcactctacatcgacccctaattttgtttctggtggatcct 686 |||||||||||| ||||||||||||| || || |||||| || | |||||||| |||| Sbjct: 11564508 gagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcct 11564567 Query: 687 ctg 689 ||| Sbjct: 11564568 ctg 11564570
>dbj|AK102650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101B01, full insert sequence Length = 3311 Score = 220 bits (111), Expect = 5e-54 Identities = 394/487 (80%), Gaps = 6/487 (1%) Strand = Plus / Plus Query: 80 agtgtcagttctagttctggtcgaacagaaactggtcgaagcttcgggaatggtcgcgtg 139 |||||||||||||||||||| ||| |||| |||| | ||||| || ||||| || ||| Sbjct: 1272 agtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtg 1331 Query: 140 cttgagcaattgtcttttcctccacttcaagaccaggatattcctgatgctaggatggat 199 |||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 1332 tttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggac 1391 Query: 200 gccattccctatgaaacctcgtttcctcccgtctcagagcagcaatcaaggtatgcgctg 259 | ||| |||||||||| || ||| || |||||||||||||| | || ||||| | Sbjct: 1392 tctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcat 1451 Query: 260 gctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatcattattccctcca 319 ||||||| |||||| || | |||| | |||||| ||||| | ||||||||||||| Sbjct: 1452 gctcttagtcagagttcccttg---ctgccaagcttggggatgagttattattccctcca 1508 Query: 320 ttgcctgggtcaagtaacaa---gggttctgcttcaacacaacaggggctgcaaagtctt 376 | ||||||||||||| ||| ||||||| ||||||| ||||||||||| |||||||| Sbjct: 1509 ctacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtcta 1568 Query: 377 gctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcaccgtgaaggtacta 436 || |||||||||||||||||||||||||| || ||||| ||||||| ||||| ||||| Sbjct: 1569 gcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtactt 1628 Query: 437 tattctgctcggtctcaaacagctgaaaatcctgagatagtacctcatgtttccacttcc 496 ||||||| ||| ||| || ||||||||||||| ||| |||| |||||| | |||| Sbjct: 1629 cattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttcc 1688 Query: 497 acccagacatggcctaaacctgaccaggggctacatctttctggttcttctcaacttcgg 556 | |||| ||||||| |||||| |||||||| | || |||| ||||||| || ||||| Sbjct: 1689 ccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcga 1748 Query: 557 attgtaa 563 ||||||| Sbjct: 1749 attgtaa 1755 Score = 46.1 bits (23), Expect = 0.16 Identities = 53/63 (84%) Strand = Plus / Plus Query: 627 gagcttcaaacaagatgaagcactctacatcgacccctaattttgtttctggtggatcct 686 |||||||||||| ||||||||||||| || || |||||| || | |||||||| |||| Sbjct: 1807 gagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcct 1866 Query: 687 ctg 689 ||| Sbjct: 1867 ctg 1869
>dbj|AK100629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C14, full insert sequence Length = 3137 Score = 220 bits (111), Expect = 5e-54 Identities = 394/487 (80%), Gaps = 6/487 (1%) Strand = Plus / Plus Query: 80 agtgtcagttctagttctggtcgaacagaaactggtcgaagcttcgggaatggtcgcgtg 139 |||||||||||||||||||| ||| |||| |||| | ||||| || ||||| || ||| Sbjct: 1224 agtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtg 1283 Query: 140 cttgagcaattgtcttttcctccacttcaagaccaggatattcctgatgctaggatggat 199 |||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 1284 tttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggac 1343 Query: 200 gccattccctatgaaacctcgtttcctcccgtctcagagcagcaatcaaggtatgcgctg 259 | ||| |||||||||| || ||| || |||||||||||||| | || ||||| | Sbjct: 1344 tctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcat 1403 Query: 260 gctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatcattattccctcca 319 ||||||| |||||| || | |||| | |||||| ||||| | ||||||||||||| Sbjct: 1404 gctcttagtcagagttcccttg---ctgccaagcttggggatgagttattattccctcca 1460 Query: 320 ttgcctgggtcaagtaacaa---gggttctgcttcaacacaacaggggctgcaaagtctt 376 | ||||||||||||| ||| ||||||| ||||||| ||||||||||| |||||||| Sbjct: 1461 ctacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtcta 1520 Query: 377 gctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcaccgtgaaggtacta 436 || |||||||||||||||||||||||||| || ||||| ||||||| ||||| ||||| Sbjct: 1521 gcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtactt 1580 Query: 437 tattctgctcggtctcaaacagctgaaaatcctgagatagtacctcatgtttccacttcc 496 ||||||| ||| ||| || ||||||||||||| ||| |||| |||||| | |||| Sbjct: 1581 cattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttcc 1640 Query: 497 acccagacatggcctaaacctgaccaggggctacatctttctggttcttctcaacttcgg 556 | |||| ||||||| |||||| |||||||| | || |||| ||||||| || ||||| Sbjct: 1641 ccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcga 1700 Query: 557 attgtaa 563 ||||||| Sbjct: 1701 attgtaa 1707 Score = 46.1 bits (23), Expect = 0.16 Identities = 53/63 (84%) Strand = Plus / Plus Query: 627 gagcttcaaacaagatgaagcactctacatcgacccctaattttgtttctggtggatcct 686 |||||||||||| ||||||||||||| || || |||||| || | |||||||| |||| Sbjct: 1759 gagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcct 1818 Query: 687 ctg 689 ||| Sbjct: 1819 ctg 1821
>ref|XM_712472.1| Candida albicans SC5314 phospholipase B5 (CaO19_12568), mRNA Length = 2265 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 682 atcctctgcccaggcatcatcaa 704 ||||||||||||||||||||||| Sbjct: 180 atcctctgcccaggcatcatcaa 202
>emb|AL033501.1|CAC41C10 C.albicans cosmid Ca41C10 Length = 38874 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 682 atcctctgcccaggcatcatcaa 704 ||||||||||||||||||||||| Sbjct: 34921 atcctctgcccaggcatcatcaa 34943
>gb|AF038128.1|AF038128 Candida albicans putative phospholipase B precursor (PLB1) gene, complete cds Length = 2400 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 682 atcctctgcccaggcatcatcaa 704 ||||||||||||||||||||||| Sbjct: 281 atcctctgcccaggcatcatcaa 303
>gb|AC160146.10| Mus musculus 10 BAC RP24-421I12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 167510 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 163 acttcaagaccaggatattcct 184 |||||||||||||||||||||| Sbjct: 14557 acttcaagaccaggatattcct 14578
>gb|U91328.1|HSU91328 Human hereditary haemochromatosis region, histone 2A-like protein gene, hereditary haemochromatosis (HLA-H) gene, RoRet gene, and sodium phosphate transporter (NPT3) gene, complete cds Length = 246282 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 493 ttccacccagacatggcctaaa 514 |||||||||||||||||||||| Sbjct: 199238 ttccacccagacatggcctaaa 199259
>gb|AC135019.3| Mus musculus BAC clone RP23-186D15 from 10, complete sequence Length = 189457 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 163 acttcaagaccaggatattcct 184 |||||||||||||||||||||| Sbjct: 142547 acttcaagaccaggatattcct 142568
>gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 13, complete sequence Length = 787999 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 512 aaacctgaccaggggctacat 532 ||||||||||||||||||||| Sbjct: 263444 aaacctgaccaggggctacat 263424
>gb|AY656702.1| Homo sapiens interleukin 13 receptor, alpha 2 (IL13RA2) gene, complete cds Length = 17618 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 aaggcttggtgatgaatcatt 309 ||||||||||||||||||||| Sbjct: 5694 aaggcttggtgatgaatcatt 5674
>emb|AL121878.11|HSDA204F4 Human DNA sequence from clone RP6-204F4 on chromosome Xq23-24 Contains the IL13RA2 gene for interleukin 13 receptor, alpha 2, a zinc finger protein 33a (ZNF33A) pseudogene, a Yes-associated protein 1 65kDa (YAP1) pseudogene and the 3'end of a novel gene (KIAA1495), complete sequence Length = 122889 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 aaggcttggtgatgaatcatt 309 ||||||||||||||||||||| Sbjct: 17984 aaggcttggtgatgaatcatt 18004
>gb|AC122441.6| Mus musculus BAC clone RP24-225A21 from chromosome 8, complete sequence Length = 177689 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 ctgaccaggggctacatcttt 536 ||||||||||||||||||||| Sbjct: 69051 ctgaccaggggctacatcttt 69031
>dbj|AP003393.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-196E1, complete sequences Length = 174303 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 35 cttggaagtcaagttgatagtgttg 59 |||||||| |||||||||||||||| Sbjct: 91439 cttggaagccaagttgatagtgttg 91415
>emb|AL672269.15| Mouse DNA sequence from clone RP23-57F11 on chromosome 11, complete sequence Length = 169954 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 ttccctccattgcctgggtca 331 ||||||||||||||||||||| Sbjct: 7872 ttccctccattgcctgggtca 7852
>gb|AC168274.5| Mus musculus BAC RP23-229B1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 177020 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 cctgaccaggggctacatct 534 |||||||||||||||||||| Sbjct: 175534 cctgaccaggggctacatct 175553
>gb|AC156952.22| Mus musculus 10 BAC RP24-385D2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179140 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 cctgaccaggggctacatct 534 |||||||||||||||||||| Sbjct: 90156 cctgaccaggggctacatct 90175
>gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062D09, complete sequence Length = 160244 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 gcttcaacaacgtagtaagg 419 |||||||||||||||||||| Sbjct: 53964 gcttcaacaacgtagtaagg 53945
>gb|AC102499.10| Mus musculus chromosome 1, clone RP24-151M13, complete sequence Length = 184760 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 caaacagctgaaaatcctga 471 |||||||||||||||||||| Sbjct: 170383 caaacagctgaaaatcctga 170364
>gb|AC113050.9| Mus musculus chromosome 1, clone RP23-250O14, complete sequence Length = 207359 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 caaacagctgaaaatcctga 471 |||||||||||||||||||| Sbjct: 22108 caaacagctgaaaatcctga 22089
>gb|AC182658.2| Populus trichocarpa clone Pop1-124E10, complete sequence Length = 99811 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 taagtgtcagttctagttct 97 |||||||||||||||||||| Sbjct: 54912 taagtgtcagttctagttct 54893
>gb|AC146227.2| Pan troglodytes BAC clone RP43-32J19 from 7, complete sequence Length = 181835 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 ctgaccaggggctacatctt 535 |||||||||||||||||||| Sbjct: 16684 ctgaccaggggctacatctt 16703 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 ctgaccaggggctacatctt 535 |||||||||||||||||||| Sbjct: 16359 ctgaccaggggctacatctt 16378 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 ctgaccaggggctacatctt 535 |||||||||||||||||||| Sbjct: 16229 ctgaccaggggctacatctt 16248
>emb|AL109757.14|HSJ636F13 Human DNA sequence from clone RP4-636F13 on chromosome 1p36.13-36.23 Contains part of the VPS13D gene for vacuolar protein sorting 13D (yeast), complete sequence Length = 54746 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 tgaaaatcctgagatagtac 479 |||||||||||||||||||| Sbjct: 46854 tgaaaatcctgagatagtac 46873
>emb|AL031012.1|HS364I22 Human DNA sequence from clone RP3-364I22 on chromosome Xq21.31-22.3, complete sequence Length = 130988 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 583 tgggctcatgccatctgcct 602 |||||||||||||||||||| Sbjct: 91953 tgggctcatgccatctgcct 91934
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 gcttcaacaacgtagtaagg 419 |||||||||||||||||||| Sbjct: 8545607 gcttcaacaacgtagtaagg 8545626
>gb|AC145937.2| Pan troglodytes BAC clone RP43-10P16 from chromosome 7, complete sequence Length = 182785 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 ctgaccaggggctacatctt 535 |||||||||||||||||||| Sbjct: 86578 ctgaccaggggctacatctt 86559 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 ctgaccaggggctacatctt 535 |||||||||||||||||||| Sbjct: 86513 ctgaccaggggctacatctt 86494 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 ctgaccaggggctacatctt 535 |||||||||||||||||||| Sbjct: 86189 ctgaccaggggctacatctt 86170 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 ctgaccaggggctacatctt 535 |||||||||||||||||||| Sbjct: 86124 ctgaccaggggctacatctt 86105 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 ctgaccaggggctacatctt 535 |||||||||||||||||||| Sbjct: 86059 ctgaccaggggctacatctt 86040
>gb|AC163632.3| Mus musculus BAC clone RP23-339H2 from chromosome 16, complete sequence Length = 190341 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 attattccctccattgcctg 326 |||||||||||||||||||| Sbjct: 150202 attattccctccattgcctg 150221
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 gcttcaacaacgtagtaagg 419 |||||||||||||||||||| Sbjct: 8616370 gcttcaacaacgtagtaagg 8616389
>gb|AC154512.2| Mus musculus BAC clone RP24-70L20 from chromosome 16, complete sequence Length = 166329 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 attattccctccattgcctg 326 |||||||||||||||||||| Sbjct: 3186 attattccctccattgcctg 3205 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,333,047 Number of Sequences: 3902068 Number of extensions: 6333047 Number of successful extensions: 105438 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105269 Number of HSP's gapped (non-prelim): 164 length of query: 725 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 702 effective length of database: 17,143,297,704 effective search space: 12034594988208 effective search space used: 12034594988208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)