ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3g14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome... 220 5e-54
2gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome... 220 5e-54
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 220 5e-54
4dbj|AK102650.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 5e-54
5dbj|AK100629.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 5e-54
6ref|XM_712472.1| Candida albicans SC5314 phospholipase B5 (CaO19... 46 0.16
7emb|AL033501.1|CAC41C10 C.albicans cosmid Ca41C10 46 0.16
8gb|AF038128.1|AF038128 Candida albicans putative phospholipase B... 46 0.16
9gb|AC160146.10| Mus musculus 10 BAC RP24-421I12 (Roswell Park Ca... 44 0.64
10gb|U91328.1|HSU91328 Human hereditary haemochromatosis region, h... 44 0.64
11gb|AC135019.3| Mus musculus BAC clone RP23-186D15 from 10, compl... 44 0.64
12gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 2.5
13gb|AY656702.1| Homo sapiens interleukin 13 receptor, alpha 2 (IL... 42 2.5
14emb|AL121878.11|HSDA204F4 Human DNA sequence from clone RP6-204F... 42 2.5
15gb|AC122441.6| Mus musculus BAC clone RP24-225A21 from chromosom... 42 2.5
16dbj|AP003393.1| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.5
17emb|AL672269.15| Mouse DNA sequence from clone RP23-57F11 on chr... 42 2.5
18gb|AC168274.5| Mus musculus BAC RP23-229B1 (Roswell Park Cancer... 40 9.9
19gb|AC156952.22| Mus musculus 10 BAC RP24-385D2 (Roswell Park Can... 40 9.9
20gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.9
21gb|AC102499.10| Mus musculus chromosome 1, clone RP24-151M13, co... 40 9.9
22gb|AC113050.9| Mus musculus chromosome 1, clone RP23-250O14, com... 40 9.9
23gb|AC182658.2| Populus trichocarpa clone Pop1-124E10, complete s... 40 9.9
24gb|AC146227.2| Pan troglodytes BAC clone RP43-32J19 from 7, comp... 40 9.9
25emb|AL109757.14|HSJ636F13 Human DNA sequence from clone RP4-636F... 40 9.9
26emb|AL031012.1|HS364I22 Human DNA sequence from clone RP3-364I22... 40 9.9
27dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
28gb|AC145937.2| Pan troglodytes BAC clone RP43-10P16 from chromos... 40 9.9
29gb|AC163632.3| Mus musculus BAC clone RP23-339H2 from chromosome... 40 9.9
30gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.9
31gb|AC154512.2| Mus musculus BAC clone RP24-70L20 from chromosome... 40 9.9

>gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0690B12,
              complete sequence
          Length = 135323

 Score =  220 bits (111), Expect = 5e-54
 Identities = 394/487 (80%), Gaps = 6/487 (1%)
 Strand = Plus / Plus

                                                                          
Query: 80     agtgtcagttctagttctggtcgaacagaaactggtcgaagcttcgggaatggtcgcgtg 139
              |||||||||||||||||||| |||  |||| |||| | |||||  || ||||| || |||
Sbjct: 133467 agtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtg 133526

                                                                          
Query: 140    cttgagcaattgtcttttcctccacttcaagaccaggatattcctgatgctaggatggat 199
               |||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||| 
Sbjct: 133527 tttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggac 133586

                                                                          
Query: 200    gccattccctatgaaacctcgtttcctcccgtctcagagcagcaatcaaggtatgcgctg 259
               |   |||  |||||||||| || ||| || |||||||||||||| | || ||||| |  
Sbjct: 133587 tctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcat 133646

                                                                          
Query: 260    gctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatcattattccctcca 319
              ||||||| |||||| ||    |   |||| | |||||| ||||| | |||||||||||||
Sbjct: 133647 gctcttagtcagagttcccttg---ctgccaagcttggggatgagttattattccctcca 133703

                                                                          
Query: 320    ttgcctgggtcaagtaacaa---gggttctgcttcaacacaacaggggctgcaaagtctt 376
               | ||||||||||||| |||   ||||||| ||||||| ||||||||||| |||||||| 
Sbjct: 133704 ctacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtcta 133763

                                                                          
Query: 377    gctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcaccgtgaaggtacta 436
              || |||||||||||||||||||||||||| || ||||| |||||||  ||||| ||||| 
Sbjct: 133764 gcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtactt 133823

                                                                          
Query: 437    tattctgctcggtctcaaacagctgaaaatcctgagatagtacctcatgtttccacttcc 496
               ||||||| ||| |||   || |||||||||||||   ||| |||| |||||| | ||||
Sbjct: 133824 cattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttcc 133883

                                                                          
Query: 497    acccagacatggcctaaacctgaccaggggctacatctttctggttcttctcaacttcgg 556
               | ||||  ||||||| |||||| |||||||| | || |||| ||||||| || ||||| 
Sbjct: 133884 ccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcga 133943

                     
Query: 557    attgtaa 563
              |||||||
Sbjct: 133944 attgtaa 133950



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                          
Query: 627    gagcttcaaacaagatgaagcactctacatcgacccctaattttgtttctggtggatcct 686
              |||||||||||| |||||||||||||   || || |||||| || | |||||||| ||||
Sbjct: 134002 gagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcct 134061

                 
Query: 687    ctg 689
              |||
Sbjct: 134062 ctg 134064



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>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12,
            complete sequence
          Length = 139627

 Score =  220 bits (111), Expect = 5e-54
 Identities = 394/487 (80%), Gaps = 6/487 (1%)
 Strand = Plus / Plus

                                                                        
Query: 80   agtgtcagttctagttctggtcgaacagaaactggtcgaagcttcgggaatggtcgcgtg 139
            |||||||||||||||||||| |||  |||| |||| | |||||  || ||||| || |||
Sbjct: 8408 agtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtg 8467

                                                                        
Query: 140  cttgagcaattgtcttttcctccacttcaagaccaggatattcctgatgctaggatggat 199
             |||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||| 
Sbjct: 8468 tttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggac 8527

                                                                        
Query: 200  gccattccctatgaaacctcgtttcctcccgtctcagagcagcaatcaaggtatgcgctg 259
             |   |||  |||||||||| || ||| || |||||||||||||| | || ||||| |  
Sbjct: 8528 tctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcat 8587

                                                                        
Query: 260  gctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatcattattccctcca 319
            ||||||| |||||| ||    |   |||| | |||||| ||||| | |||||||||||||
Sbjct: 8588 gctcttagtcagagttcccttg---ctgccaagcttggggatgagttattattccctcca 8644

                                                                        
Query: 320  ttgcctgggtcaagtaacaa---gggttctgcttcaacacaacaggggctgcaaagtctt 376
             | ||||||||||||| |||   ||||||| ||||||| ||||||||||| |||||||| 
Sbjct: 8645 ctacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtcta 8704

                                                                        
Query: 377  gctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcaccgtgaaggtacta 436
            || |||||||||||||||||||||||||| || ||||| |||||||  ||||| ||||| 
Sbjct: 8705 gcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtactt 8764

                                                                        
Query: 437  tattctgctcggtctcaaacagctgaaaatcctgagatagtacctcatgtttccacttcc 496
             ||||||| ||| |||   || |||||||||||||   ||| |||| |||||| | ||||
Sbjct: 8765 cattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttcc 8824

                                                                        
Query: 497  acccagacatggcctaaacctgaccaggggctacatctttctggttcttctcaacttcgg 556
             | ||||  ||||||| |||||| |||||||| | || |||| ||||||| || ||||| 
Sbjct: 8825 ccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcga 8884

                   
Query: 557  attgtaa 563
            |||||||
Sbjct: 8885 attgtaa 8891



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                        
Query: 627  gagcttcaaacaagatgaagcactctacatcgacccctaattttgtttctggtggatcct 686
            |||||||||||| |||||||||||||   || || |||||| || | |||||||| ||||
Sbjct: 8943 gagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcct 9002

               
Query: 687  ctg 689
            |||
Sbjct: 9003 ctg 9005



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  220 bits (111), Expect = 5e-54
 Identities = 394/487 (80%), Gaps = 6/487 (1%)
 Strand = Plus / Plus

                                                                            
Query: 80       agtgtcagttctagttctggtcgaacagaaactggtcgaagcttcgggaatggtcgcgtg 139
                |||||||||||||||||||| |||  |||| |||| | |||||  || ||||| || |||
Sbjct: 11563973 agtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtg 11564032

                                                                            
Query: 140      cttgagcaattgtcttttcctccacttcaagaccaggatattcctgatgctaggatggat 199
                 |||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||| 
Sbjct: 11564033 tttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggac 11564092

                                                                            
Query: 200      gccattccctatgaaacctcgtttcctcccgtctcagagcagcaatcaaggtatgcgctg 259
                 |   |||  |||||||||| || ||| || |||||||||||||| | || ||||| |  
Sbjct: 11564093 tctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcat 11564152

                                                                            
Query: 260      gctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatcattattccctcca 319
                ||||||| |||||| ||    |   |||| | |||||| ||||| | |||||||||||||
Sbjct: 11564153 gctcttagtcagagttcccttg---ctgccaagcttggggatgagttattattccctcca 11564209

                                                                            
Query: 320      ttgcctgggtcaagtaacaa---gggttctgcttcaacacaacaggggctgcaaagtctt 376
                 | ||||||||||||| |||   ||||||| ||||||| ||||||||||| |||||||| 
Sbjct: 11564210 ctacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtcta 11564269

                                                                            
Query: 377      gctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcaccgtgaaggtacta 436
                || |||||||||||||||||||||||||| || ||||| |||||||  ||||| ||||| 
Sbjct: 11564270 gcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtactt 11564329

                                                                            
Query: 437      tattctgctcggtctcaaacagctgaaaatcctgagatagtacctcatgtttccacttcc 496
                 ||||||| ||| |||   || |||||||||||||   ||| |||| |||||| | ||||
Sbjct: 11564330 cattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttcc 11564389

                                                                            
Query: 497      acccagacatggcctaaacctgaccaggggctacatctttctggttcttctcaacttcgg 556
                 | ||||  ||||||| |||||| |||||||| | || |||| ||||||| || ||||| 
Sbjct: 11564390 ccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcga 11564449

                       
Query: 557      attgtaa 563
                |||||||
Sbjct: 11564450 attgtaa 11564456



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                            
Query: 627      gagcttcaaacaagatgaagcactctacatcgacccctaattttgtttctggtggatcct 686
                |||||||||||| |||||||||||||   || || |||||| || | |||||||| ||||
Sbjct: 11564508 gagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcct 11564567

                   
Query: 687      ctg 689
                |||
Sbjct: 11564568 ctg 11564570



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>dbj|AK102650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101B01, full
            insert sequence
          Length = 3311

 Score =  220 bits (111), Expect = 5e-54
 Identities = 394/487 (80%), Gaps = 6/487 (1%)
 Strand = Plus / Plus

                                                                        
Query: 80   agtgtcagttctagttctggtcgaacagaaactggtcgaagcttcgggaatggtcgcgtg 139
            |||||||||||||||||||| |||  |||| |||| | |||||  || ||||| || |||
Sbjct: 1272 agtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtg 1331

                                                                        
Query: 140  cttgagcaattgtcttttcctccacttcaagaccaggatattcctgatgctaggatggat 199
             |||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||| 
Sbjct: 1332 tttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggac 1391

                                                                        
Query: 200  gccattccctatgaaacctcgtttcctcccgtctcagagcagcaatcaaggtatgcgctg 259
             |   |||  |||||||||| || ||| || |||||||||||||| | || ||||| |  
Sbjct: 1392 tctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcat 1451

                                                                        
Query: 260  gctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatcattattccctcca 319
            ||||||| |||||| ||    |   |||| | |||||| ||||| | |||||||||||||
Sbjct: 1452 gctcttagtcagagttcccttg---ctgccaagcttggggatgagttattattccctcca 1508

                                                                        
Query: 320  ttgcctgggtcaagtaacaa---gggttctgcttcaacacaacaggggctgcaaagtctt 376
             | ||||||||||||| |||   ||||||| ||||||| ||||||||||| |||||||| 
Sbjct: 1509 ctacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtcta 1568

                                                                        
Query: 377  gctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcaccgtgaaggtacta 436
            || |||||||||||||||||||||||||| || ||||| |||||||  ||||| ||||| 
Sbjct: 1569 gcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtactt 1628

                                                                        
Query: 437  tattctgctcggtctcaaacagctgaaaatcctgagatagtacctcatgtttccacttcc 496
             ||||||| ||| |||   || |||||||||||||   ||| |||| |||||| | ||||
Sbjct: 1629 cattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttcc 1688

                                                                        
Query: 497  acccagacatggcctaaacctgaccaggggctacatctttctggttcttctcaacttcgg 556
             | ||||  ||||||| |||||| |||||||| | || |||| ||||||| || ||||| 
Sbjct: 1689 ccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcga 1748

                   
Query: 557  attgtaa 563
            |||||||
Sbjct: 1749 attgtaa 1755



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                        
Query: 627  gagcttcaaacaagatgaagcactctacatcgacccctaattttgtttctggtggatcct 686
            |||||||||||| |||||||||||||   || || |||||| || | |||||||| ||||
Sbjct: 1807 gagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcct 1866

               
Query: 687  ctg 689
            |||
Sbjct: 1867 ctg 1869



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>dbj|AK100629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C14, full
            insert sequence
          Length = 3137

 Score =  220 bits (111), Expect = 5e-54
 Identities = 394/487 (80%), Gaps = 6/487 (1%)
 Strand = Plus / Plus

                                                                        
Query: 80   agtgtcagttctagttctggtcgaacagaaactggtcgaagcttcgggaatggtcgcgtg 139
            |||||||||||||||||||| |||  |||| |||| | |||||  || ||||| || |||
Sbjct: 1224 agtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtg 1283

                                                                        
Query: 140  cttgagcaattgtcttttcctccacttcaagaccaggatattcctgatgctaggatggat 199
             |||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||| 
Sbjct: 1284 tttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggac 1343

                                                                        
Query: 200  gccattccctatgaaacctcgtttcctcccgtctcagagcagcaatcaaggtatgcgctg 259
             |   |||  |||||||||| || ||| || |||||||||||||| | || ||||| |  
Sbjct: 1344 tctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcat 1403

                                                                        
Query: 260  gctcttaatcagagctcaaggggttctgcaaggcttggtgatgaatcattattccctcca 319
            ||||||| |||||| ||    |   |||| | |||||| ||||| | |||||||||||||
Sbjct: 1404 gctcttagtcagagttcccttg---ctgccaagcttggggatgagttattattccctcca 1460

                                                                        
Query: 320  ttgcctgggtcaagtaacaa---gggttctgcttcaacacaacaggggctgcaaagtctt 376
             | ||||||||||||| |||   ||||||| ||||||| ||||||||||| |||||||| 
Sbjct: 1461 ctacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtcta 1520

                                                                        
Query: 377  gctaagaacacacttgcatcaaggcttcaacaacgtagtaagggcaccgtgaaggtacta 436
            || |||||||||||||||||||||||||| || ||||| |||||||  ||||| ||||| 
Sbjct: 1521 gcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtactt 1580

                                                                        
Query: 437  tattctgctcggtctcaaacagctgaaaatcctgagatagtacctcatgtttccacttcc 496
             ||||||| ||| |||   || |||||||||||||   ||| |||| |||||| | ||||
Sbjct: 1581 cattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttcc 1640

                                                                        
Query: 497  acccagacatggcctaaacctgaccaggggctacatctttctggttcttctcaacttcgg 556
             | ||||  ||||||| |||||| |||||||| | || |||| ||||||| || ||||| 
Sbjct: 1641 ccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcga 1700

                   
Query: 557  attgtaa 563
            |||||||
Sbjct: 1701 attgtaa 1707



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                        
Query: 627  gagcttcaaacaagatgaagcactctacatcgacccctaattttgtttctggtggatcct 686
            |||||||||||| |||||||||||||   || || |||||| || | |||||||| ||||
Sbjct: 1759 gagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcct 1818

               
Query: 687  ctg 689
            |||
Sbjct: 1819 ctg 1821



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>ref|XM_712472.1| Candida albicans SC5314 phospholipase B5 (CaO19_12568), mRNA
          Length = 2265

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 682 atcctctgcccaggcatcatcaa 704
           |||||||||||||||||||||||
Sbjct: 180 atcctctgcccaggcatcatcaa 202



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>emb|AL033501.1|CAC41C10 C.albicans cosmid Ca41C10
          Length = 38874

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 682   atcctctgcccaggcatcatcaa 704
             |||||||||||||||||||||||
Sbjct: 34921 atcctctgcccaggcatcatcaa 34943



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>gb|AF038128.1|AF038128 Candida albicans putative phospholipase B precursor (PLB1) gene,
           complete cds
          Length = 2400

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 682 atcctctgcccaggcatcatcaa 704
           |||||||||||||||||||||||
Sbjct: 281 atcctctgcccaggcatcatcaa 303



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>gb|AC160146.10| Mus musculus 10 BAC RP24-421I12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 167510

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 163   acttcaagaccaggatattcct 184
             ||||||||||||||||||||||
Sbjct: 14557 acttcaagaccaggatattcct 14578



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>gb|U91328.1|HSU91328 Human hereditary haemochromatosis region, histone 2A-like protein gene,
              hereditary haemochromatosis (HLA-H) gene, RoRet gene, and
              sodium phosphate transporter (NPT3) gene, complete cds
          Length = 246282

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 493    ttccacccagacatggcctaaa 514
              ||||||||||||||||||||||
Sbjct: 199238 ttccacccagacatggcctaaa 199259



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>gb|AC135019.3| Mus musculus BAC clone RP23-186D15 from 10, complete sequence
          Length = 189457

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 163    acttcaagaccaggatattcct 184
              ||||||||||||||||||||||
Sbjct: 142547 acttcaagaccaggatattcct 142568



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>gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 13, complete
              sequence
          Length = 787999

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 512    aaacctgaccaggggctacat 532
              |||||||||||||||||||||
Sbjct: 263444 aaacctgaccaggggctacat 263424



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>gb|AY656702.1| Homo sapiens interleukin 13 receptor, alpha 2 (IL13RA2) gene,
            complete cds
          Length = 17618

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 289  aaggcttggtgatgaatcatt 309
            |||||||||||||||||||||
Sbjct: 5694 aaggcttggtgatgaatcatt 5674



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>emb|AL121878.11|HSDA204F4 Human DNA sequence from clone RP6-204F4 on chromosome Xq23-24 Contains
             the IL13RA2 gene for interleukin 13 receptor, alpha 2, a
             zinc finger protein 33a (ZNF33A) pseudogene, a
             Yes-associated protein 1 65kDa (YAP1) pseudogene and the
             3'end of a novel gene (KIAA1495), complete sequence
          Length = 122889

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 289   aaggcttggtgatgaatcatt 309
             |||||||||||||||||||||
Sbjct: 17984 aaggcttggtgatgaatcatt 18004



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>gb|AC122441.6| Mus musculus BAC clone RP24-225A21 from chromosome 8, complete sequence
          Length = 177689

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 516   ctgaccaggggctacatcttt 536
             |||||||||||||||||||||
Sbjct: 69051 ctgaccaggggctacatcttt 69031



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>dbj|AP003393.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-196E1, complete
             sequences
          Length = 174303

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 35    cttggaagtcaagttgatagtgttg 59
             |||||||| ||||||||||||||||
Sbjct: 91439 cttggaagccaagttgatagtgttg 91415



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>emb|AL672269.15| Mouse DNA sequence from clone RP23-57F11 on chromosome 11, complete
            sequence
          Length = 169954

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 311  ttccctccattgcctgggtca 331
            |||||||||||||||||||||
Sbjct: 7872 ttccctccattgcctgggtca 7852



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>gb|AC168274.5| Mus musculus  BAC RP23-229B1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 177020

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 515    cctgaccaggggctacatct 534
              ||||||||||||||||||||
Sbjct: 175534 cctgaccaggggctacatct 175553



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>gb|AC156952.22| Mus musculus 10 BAC RP24-385D2 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 179140

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 515   cctgaccaggggctacatct 534
             ||||||||||||||||||||
Sbjct: 90156 cctgaccaggggctacatct 90175



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>gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0062D09, complete sequence
          Length = 160244

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   gcttcaacaacgtagtaagg 419
             ||||||||||||||||||||
Sbjct: 53964 gcttcaacaacgtagtaagg 53945



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>gb|AC102499.10| Mus musculus chromosome 1, clone RP24-151M13, complete sequence
          Length = 184760

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 452    caaacagctgaaaatcctga 471
              ||||||||||||||||||||
Sbjct: 170383 caaacagctgaaaatcctga 170364



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>gb|AC113050.9| Mus musculus chromosome 1, clone RP23-250O14, complete sequence
          Length = 207359

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   caaacagctgaaaatcctga 471
             ||||||||||||||||||||
Sbjct: 22108 caaacagctgaaaatcctga 22089



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>gb|AC182658.2| Populus trichocarpa clone Pop1-124E10, complete sequence
          Length = 99811

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    taagtgtcagttctagttct 97
             ||||||||||||||||||||
Sbjct: 54912 taagtgtcagttctagttct 54893



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>gb|AC146227.2| Pan troglodytes BAC clone RP43-32J19 from 7, complete sequence
          Length = 181835

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 516   ctgaccaggggctacatctt 535
             ||||||||||||||||||||
Sbjct: 16684 ctgaccaggggctacatctt 16703



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 516   ctgaccaggggctacatctt 535
             ||||||||||||||||||||
Sbjct: 16359 ctgaccaggggctacatctt 16378



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 516   ctgaccaggggctacatctt 535
             ||||||||||||||||||||
Sbjct: 16229 ctgaccaggggctacatctt 16248



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>emb|AL109757.14|HSJ636F13 Human DNA sequence from clone RP4-636F13 on chromosome 1p36.13-36.23
             Contains part of the VPS13D gene for vacuolar protein
             sorting 13D (yeast), complete sequence
          Length = 54746

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   tgaaaatcctgagatagtac 479
             ||||||||||||||||||||
Sbjct: 46854 tgaaaatcctgagatagtac 46873



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>emb|AL031012.1|HS364I22 Human DNA sequence from clone RP3-364I22 on chromosome Xq21.31-22.3,
             complete sequence
          Length = 130988

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   tgggctcatgccatctgcct 602
             ||||||||||||||||||||
Sbjct: 91953 tgggctcatgccatctgcct 91934



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 400     gcttcaacaacgtagtaagg 419
               ||||||||||||||||||||
Sbjct: 8545607 gcttcaacaacgtagtaagg 8545626



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>gb|AC145937.2| Pan troglodytes BAC clone RP43-10P16 from chromosome 7, complete
             sequence
          Length = 182785

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   ctgaccaggggctacatctt 535
             ||||||||||||||||||||
Sbjct: 86578 ctgaccaggggctacatctt 86559



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   ctgaccaggggctacatctt 535
             ||||||||||||||||||||
Sbjct: 86513 ctgaccaggggctacatctt 86494



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   ctgaccaggggctacatctt 535
             ||||||||||||||||||||
Sbjct: 86189 ctgaccaggggctacatctt 86170



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   ctgaccaggggctacatctt 535
             ||||||||||||||||||||
Sbjct: 86124 ctgaccaggggctacatctt 86105



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   ctgaccaggggctacatctt 535
             ||||||||||||||||||||
Sbjct: 86059 ctgaccaggggctacatctt 86040



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>gb|AC163632.3| Mus musculus BAC clone RP23-339H2 from chromosome 16, complete sequence
          Length = 190341

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    attattccctccattgcctg 326
              ||||||||||||||||||||
Sbjct: 150202 attattccctccattgcctg 150221



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 400     gcttcaacaacgtagtaagg 419
               ||||||||||||||||||||
Sbjct: 8616370 gcttcaacaacgtagtaagg 8616389



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>gb|AC154512.2| Mus musculus BAC clone RP24-70L20 from chromosome 16, complete
            sequence
          Length = 166329

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  attattccctccattgcctg 326
            ||||||||||||||||||||
Sbjct: 3186 attattccctccattgcctg 3205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,333,047
Number of Sequences: 3902068
Number of extensions: 6333047
Number of successful extensions: 105438
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105269
Number of HSP's gapped (non-prelim): 164
length of query: 725
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 702
effective length of database: 17,143,297,704
effective search space: 12034594988208
effective search space used: 12034594988208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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