Clone Information

BLAST Search Result

Clone Name	basd3g04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MARH2_MOUSE (Q99M02) Membrane-associated RING finger protein 2 (...	46	1e-04
2	MARH4_HUMAN (Q9P2E8) Membrane-associated RING finger protein 4 (...	45	1e-04
3	MARH4_MOUSE (Q80TE3) Membrane-associated RING finger protein 4 (...	45	1e-04
4	MARH3_MOUSE (Q8BRX9) Membrane-associated RING finger protein 3 (...	45	2e-04
5	MARH3_RAT (Q5XIE5) Membrane-associated RING finger protein 3 (Me...	45	2e-04
6	MARH3_HUMAN (Q86UD3) Membrane-associated RING finger protein 3 (...	45	2e-04
7	SSM4_YEAST (P40318) Protein SSM4	41	2e-04
8	MARH2_HUMAN (Q9P0N8) Membrane-associated RING finger protein 2 (...	42	0.001
9	STATB_CAEEL (Q20977) Signal transducer and activator of transcri...	35	0.17
10	MIR2_HHV8 (P90489) Modulator of immune recognition 2 (EC 6.3.2.-...	35	0.23
11	MIR1_HHV8 (P90495) Modulator of immune recognition 1 (EC 6.3.2.-...	33	0.66
12	VIE1_BHV4D (P27426) 32.7 kDa immediate early protein IE1	32	1.5
13	PURA_PSEF5 (Q4KJ68) Adenylosuccinate synthetase (EC 6.3.4.4) (IM...	31	3.3
14	RNF24_MOUSE (Q8BGI1) RING finger protein 24	30	4.2
15	PURA_PSEU2 (Q4ZYX5) Adenylosuccinate synthetase (EC 6.3.4.4) (IM...	30	4.2
16	PURA_PSESM (Q87VJ9) Adenylosuccinate synthetase (EC 6.3.4.4) (IM...	30	4.2
17	PURA_PSE14 (Q48NZ7) Adenylosuccinate synthetase (EC 6.3.4.4) (IM...	30	4.2
18	MUC4_HUMAN (Q99102) Mucin-4 (Tracheobronchial mucin) (Fragment)	30	4.2
19	RNF24_HUMAN (Q9Y225) RING finger protein 24	30	5.6
20	FEOB_STAAW (Q8NUR5) Ferrous iron transport protein B	30	5.6
21	FEOB_STAAS (Q6G6C4) Ferrous iron transport protein B	30	5.6
22	FEOB_STAAR (Q6GDP8) Ferrous iron transport protein B	30	5.6
23	FEOB_STAAN (Q7A3F2) Ferrous iron transport protein B	30	5.6
24	FEOB_STAAM (Q99R86) Ferrous iron transport protein B	30	5.6
25	FEOB_STAAC (Q5HD01) Ferrous iron transport protein B	30	5.6
26	PURA_PSEPF (Q3KIY4) Adenylosuccinate synthetase (EC 6.3.4.4) (IM...	30	5.6
27	CD22_HUMAN (P20273) B-cell receptor CD22 precursor (Leu-14) (B-l...	30	5.6
28	CD22_GORGO (Q9N1E4) B-cell receptor CD22 precursor (Siglec-2) (F...	30	5.6
29	PURA_LEGPN (Q8RNM2) Adenylosuccinate synthetase (EC 6.3.4.4) (IM...	30	7.2
30	PURA_LEGPL (Q5WZ56) Adenylosuccinate synthetase (EC 6.3.4.4) (IM...	30	7.2
31	PURA_LEGPH (Q5ZY86) Adenylosuccinate synthetase (EC 6.3.4.4) (IM...	30	7.2
32	PURA_THEFY (Q47KH7) Adenylosuccinate synthetase (EC 6.3.4.4) (IM...	30	7.2
33	CUTL1_RAT (P53565) Homeobox protein cut-like 1 (CCAAT displaceme...	30	7.2
34	CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displace...	30	7.2
35	Y053_NPVAC (P41457) Hypothetical 17.0 kDa protein in LEF8-FP int...	30	7.2
36	MIF2_YEAST (P35201) Protein MIF2	30	7.2
37	CUTL1_MOUSE (P53564) Homeobox protein cut-like 1 (CCAAT displace...	30	7.2
38	PURA_PSEAE (Q9HUM6) Adenylosuccinate synthetase (EC 6.3.4.4) (IM...	30	7.2
39	CD22_PANTR (Q9N1E6) B-cell receptor CD22 precursor (Siglec-2) (F...	30	7.2
40	CD22_PANPA (Q9N1E5) B-cell receptor CD22 precursor (Siglec-2) (F...	30	7.2
41	PURA_LEGPA (Q5X7Q5) Adenylosuccinate synthetase (EC 6.3.4.4) (IM...	29	9.5
42	LRP2_HUMAN (P98164) Low-density lipoprotein receptor-related pro...	29	9.5

>MARH2_MOUSE (Q99M02) Membrane-associated RING finger protein 2|
           (Membrane-associated RING-CH protein II) (MARCH-II)
          Length = 246

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +2

Query: 443 CRICQEEDDIKNLESPCACTGSVKYAHRACVQRW 544
           CRIC E  + +NL SPC CTG++   H++C+++W
Sbjct: 64  CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKW 97

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>MARH4_HUMAN (Q9P2E8) Membrane-associated RING finger protein 4|
           (Membrane-associated RING-CH protein IV) (MARCH-IV)
           (RING finger protein 174)
          Length = 410

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +2

Query: 443 CRICQEEDDIKNLESPCACTGSVKYAHRACVQRWCNEKG 559
           CRIC +  +   L SPC C GSVK  H+ C+ +W +E+G
Sbjct: 163 CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERG 201

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>MARH4_MOUSE (Q80TE3) Membrane-associated RING finger protein 4|
           (Membrane-associated RING-CH protein IV) (MARCH-IV)
          Length = 408

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +2

Query: 443 CRICQEEDDIKNLESPCACTGSVKYAHRACVQRWCNEKG 559
           CRIC +  +   L SPC C GSVK  H+ C+ +W +E+G
Sbjct: 162 CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERG 200

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>MARH3_MOUSE (Q8BRX9) Membrane-associated RING finger protein 3|
           (Membrane-associated RING-CH protein III) (MARCH-III)
          Length = 218

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 416 EEPLLQMTECRICQEEDDIKNLESPCACTGSVKYAHRACVQRW 544
           + P      CRIC E    ++L SPC CTG++   HR+C++ W
Sbjct: 62  QSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHW 104

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>MARH3_RAT (Q5XIE5) Membrane-associated RING finger protein 3|
           (Membrane-associated RING-CH protein III) (MARCH-III)
          Length = 253

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 416 EEPLLQMTECRICQEEDDIKNLESPCACTGSVKYAHRACVQRW 544
           + P      CRIC E    ++L SPC CTG++   HR+C++ W
Sbjct: 62  QSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHW 104

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>MARH3_HUMAN (Q86UD3) Membrane-associated RING finger protein 3|
           (Membrane-associated RING-CH protein III) (MARCH-III)
           (RING finger protein 173)
          Length = 253

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 416 EEPLLQMTECRICQEEDDIKNLESPCACTGSVKYAHRACVQRW 544
           + P      CRIC E    ++L SPC CTG++   HR+C++ W
Sbjct: 62  QSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHW 104

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>SSM4_YEAST (P40318) Protein SSM4|
          Length = 1319

 Score = 41.2 bits (95), Expect(2) = 2e-04
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 443 CRICQEEDDIKN-LESPCACTGSVKYAHRACVQRWCNEK 556
           CRIC+ E    N L  PC C GS+KY H +C+  W   K
Sbjct: 39  CRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASK 77



 Score = 22.7 bits (47), Expect(2) = 2e-04
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 561 DVTCEICHEPYE 596
           DV C+ICH P +
Sbjct: 87  DVKCDICHYPIQ 98

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>MARH2_HUMAN (Q9P0N8) Membrane-associated RING finger protein 2|
           (Membrane-associated RING-CH protein II) (MARCH-II)
           (RING finger protein 172)
          Length = 246

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +2

Query: 443 CRICQEEDDIKNLESPCACTGSVKYAHRACVQRW 544
           CRIC E  + + L SPC CTG++   H++C+++W
Sbjct: 64  CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKW 97

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>STATB_CAEEL (Q20977) Signal transducer and activator of transcription b (Zinc|
           finger protein STAT-B)
          Length = 966

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 443 CRICQEEDDIKNLESPCACTGSVKYAHRACVQRWCN--EKGRCDM 571
           CRICQ  +   ++  PC C G++   H  C+ +W N   K  C++
Sbjct: 52  CRICQMHEG--DMVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEI 94

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>MIR2_HHV8 (P90489) Modulator of immune recognition 2 (EC 6.3.2.-) (MIR2)|
           (IE1A protein) (ORF K5)
          Length = 256

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 443 CRICQEEDDIKNLESPCACTGSVKYAHRACVQRW 544
           C IC+EE   + +  PCACTG +   H  C+  W
Sbjct: 15  CWICREEVGNEGIH-PCACTGELDVVHPQCLSTW 47

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>MIR1_HHV8 (P90495) Modulator of immune recognition 1 (EC 6.3.2.-) (MIR1)|
           (IE1B protein) (ORF K3)
          Length = 333

 Score = 33.1 bits (74), Expect = 0.66
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 443 CRICQEEDDIKNLESPCACTGSVKYAHRACVQRW 544
           C IC EE   +   + C CTG ++  HR+C+  W
Sbjct: 9   CWICNEELGNERFRA-CGCTGELENVHRSCLSTW 41

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>VIE1_BHV4D (P27426) 32.7 kDa immediate early protein IE1|
          Length = 285

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 440 ECRICQEEDDIKNLESPCACTGSVKYAHRACVQRWCNEKG 559
           +C IC++ + +      C C G ++Y H  C++ W +  G
Sbjct: 131 QCWICRDGESLPEARY-CNCYGDLQYCHEECLKTWISMSG 169

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>PURA_PSEF5 (Q4KJ68) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 430

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 414 SGTMLSPTAKKECPVMGSAVVSLDEELLGAPVTSMGSGTIRRSTLSIR*SF 262
           S + L     +E P    A +   EEL+GAP+  + +G  R  T+ +R  F
Sbjct: 379 SESTLGAKTLEELPAAAQAYIKRIEELVGAPIDIISTGPDRNETIVLRHPF 429

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>RNF24_MOUSE (Q8BGI1) RING finger protein 24|
          Length = 148

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 383 FFAVGDSMVPEEEPLLQMTE-CRICQEEDDIKNLESPCACTGSVKYA-HRACVQRWCNEK 556
           F+A    ++ E+   L + E C +C E+   ++    C C    K+A HR C+ +W   +
Sbjct: 57  FYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPC----KHAFHRKCLVKWLEVR 112

Query: 557 GRCDM*NLP 583
             C + N+P
Sbjct: 113 KVCPLCNMP 121

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>PURA_PSEU2 (Q4ZYX5) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 430

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 414 SGTMLSPTAKKECPVMGSAVVSLDEELLGAPVTSMGSGTIRRSTLSIR*SF 262
           S + L     +E P    A +   EEL+GAP+  + +G  R  T+ +R  F
Sbjct: 379 SESTLGAKTLEELPAAARAYIKRVEELVGAPIDIISTGPDRNETIVLRHPF 429

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>PURA_PSESM (Q87VJ9) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 430

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 414 SGTMLSPTAKKECPVMGSAVVSLDEELLGAPVTSMGSGTIRRSTLSIR*SF 262
           S + L     +E P    A +   EEL+GAP+  + +G  R  T+ +R  F
Sbjct: 379 SESTLGAKTLEELPAAARAYIKRVEELVGAPIDIISTGPDRNETIVLRHPF 429

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>PURA_PSE14 (Q48NZ7) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 430

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 414 SGTMLSPTAKKECPVMGSAVVSLDEELLGAPVTSMGSGTIRRSTLSIR*SF 262
           S + L     +E P    A +   EEL+GAP+  + +G  R  T+ +R  F
Sbjct: 379 SESTLGAKTLEELPAAARAYIKRVEELVGAPIDIISTGPDRNETIVLRHPF 429

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>MUC4_HUMAN (Q99102) Mucin-4 (Tracheobronchial mucin) (Fragment)|
          Length = 610

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 308 PIEVTGAPKSSSSRDTTALPITGHSFFAVGDS 403
           P+ VT +P S+S+ DTT LP+T  S  + GD+
Sbjct: 363 PLPVT-SPSSASTGDTTPLPVTDTSSVSTGDT 393

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>RNF24_HUMAN (Q9Y225) RING finger protein 24|
          Length = 148

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 383 FFAVGDSMVPEEEPLLQMTE-CRICQEEDDIKNLESPCACTGSVKYA-HRACVQRWCNEK 556
           F+A    ++ E+   L + E C +C E+   ++    C C    K+A HR C+ +W   +
Sbjct: 57  FYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPC----KHAFHRKCLIKWLEVR 112

Query: 557 GRCDM*NLP 583
             C + N+P
Sbjct: 113 KVCPLCNMP 121

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>FEOB_STAAW (Q8NUR5) Ferrous iron transport protein B|
          Length = 664

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 607 VYPCSYGSWQISHVTSPFLIAPSLYTSPMRILYTAG 500
           V P  +G+WQ      P  +A  +  S M I+Y++G
Sbjct: 556 VQPLGFGTWQAGATLVPGFLAKEVIVSSMAIIYSSG 591

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>FEOB_STAAS (Q6G6C4) Ferrous iron transport protein B|
          Length = 664

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 607 VYPCSYGSWQISHVTSPFLIAPSLYTSPMRILYTAG 500
           V P  +G+WQ      P  +A  +  S M I+Y++G
Sbjct: 556 VQPLGFGTWQAGATLVPGFLAKEVIVSSMAIIYSSG 591

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>FEOB_STAAR (Q6GDP8) Ferrous iron transport protein B|
          Length = 664

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 607 VYPCSYGSWQISHVTSPFLIAPSLYTSPMRILYTAG 500
           V P  +G+WQ      P  +A  +  S M I+Y++G
Sbjct: 556 VQPLGFGTWQAGATLVPGFLAKEVIVSSMAIIYSSG 591

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>FEOB_STAAN (Q7A3F2) Ferrous iron transport protein B|
          Length = 664

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 607 VYPCSYGSWQISHVTSPFLIAPSLYTSPMRILYTAG 500
           V P  +G+WQ      P  +A  +  S M I+Y++G
Sbjct: 556 VQPLGFGTWQAGATLVPGFLAKEVIVSSMAIIYSSG 591

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>FEOB_STAAM (Q99R86) Ferrous iron transport protein B|
          Length = 664

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 607 VYPCSYGSWQISHVTSPFLIAPSLYTSPMRILYTAG 500
           V P  +G+WQ      P  +A  +  S M I+Y++G
Sbjct: 556 VQPLGFGTWQAGATLVPGFLAKEVIVSSMAIIYSSG 591

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>FEOB_STAAC (Q5HD01) Ferrous iron transport protein B|
          Length = 664

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 607 VYPCSYGSWQISHVTSPFLIAPSLYTSPMRILYTAG 500
           V P  +G+WQ      P  +A  +  S M I+Y++G
Sbjct: 556 VQPLGFGTWQAGATLVPGFLAKEVIVSSMAIIYSSG 591

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>PURA_PSEPF (Q3KIY4) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 429

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -1

Query: 423 GSSSGTMLSPTAKKECPVMGSAVVSLDEELLGAPVTSMGSGTIRRSTLSIR*SF 262
           G S  T+ + T + E P    A +   EEL+GAP+  + +G  R  T+ +R  F
Sbjct: 376 GWSESTVGAKTLE-ELPANARAYIKRVEELIGAPIDIISTGPDRNETIVLRHPF 428

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>CD22_HUMAN (P20273) B-cell receptor CD22 precursor (Leu-14) (B-lymphocyte cell|
           adhesion molecule) (BL-CAM) (Siglec-2)
          Length = 847

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 160 CQFNNYEADEEIF-LFHNEAHQRPW*EIRGTKYSSSTFEGRTPSSLAR 20
           C +   + D E F LFHN  + +   +  GT+   ST +G+ PS   R
Sbjct: 44  CTYRALDGDLESFILFHNPEYNKNTSKFDGTRLYESTKDGKVPSEQKR 91

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>CD22_GORGO (Q9N1E4) B-cell receptor CD22 precursor (Siglec-2) (Fragment)|
          Length = 332

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 160 CQFNNYEADEEIF-LFHNEAHQRPW*EIRGTKYSSSTFEGRTPSSLAR 20
           C +   + D E F LFHN  + +   +  GT+   ST +G+ PS   R
Sbjct: 44  CTYRALDGDLESFILFHNPEYNKNTSKFDGTRLYESTKDGKVPSEQKR 91

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>PURA_LEGPN (Q8RNM2) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 431

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 393 TAKKECPVMGSAVVSLDEELLGAPVTSMGSGTIRRSTLSIR*SF 262
           T   + P    A +   EE+LG P+  + +G  R ST+++R  F
Sbjct: 387 TVMSDLPANARAYLKRIEEILGIPIDMLSTGPERDSTITLRGPF 430

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>PURA_LEGPL (Q5WZ56) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 431

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 393 TAKKECPVMGSAVVSLDEELLGAPVTSMGSGTIRRSTLSIR*SF 262
           T   + P    A +   EE+LG P+  + +G  R ST+++R  F
Sbjct: 387 TVMSDLPANARAYLKRIEEILGIPIDMLSTGPERDSTITLRDPF 430

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>PURA_LEGPH (Q5ZY86) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 431

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 393 TAKKECPVMGSAVVSLDEELLGAPVTSMGSGTIRRSTLSIR*SF 262
           T   + P    A +   EE+LG P+  + +G  R ST+++R  F
Sbjct: 387 TVMSDLPANARAYLKRIEEILGIPIDMLSTGPERDSTITLRGPF 430

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>PURA_THEFY (Q47KH7) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 427

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 381 ECPVMGSAVVSLDEELLGAPVTSMGSGTIRRSTLSIR 271
           + P    A V   EE+ GAP++++G G  R  TL +R
Sbjct: 388 DLPKNAQAYVRAIEEMSGAPISAIGVGPGREQTLELR 424

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>CUTL1_RAT (P53565) Homeobox protein cut-like 1 (CCAAT displacement protein)|
           (CDP) (CDP2) (Fragment)
          Length = 862

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 302 PEPIEVTGAPKSSSSRDTTALPITGHSFFAVGD--SMVPE 415
           PEP +    P +S S+ TT LP++GHS  ++ +  +M PE
Sbjct: 432 PEPSD----PPTSDSQPTTPLPLSGHSALSIQELVAMSPE 467

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>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP)
          Length = 1505

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 302  PEPIEVTGAPKSSSSRDTTALPITGHSFFAVGD--SMVPE 415
            PEP +    P +S S+ TT LP++GHS  ++ +  +M PE
Sbjct: 1090 PEPSD----PPASDSQPTTPLPLSGHSALSIQELVAMSPE 1125

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>Y053_NPVAC (P41457) Hypothetical 17.0 kDa protein in LEF8-FP intergenic region|
          Length = 139

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +2

Query: 437 TECRICQEEDDIKNLESPCACTGSV---KYAHRACVQRWCNEKGR 562
           TEC+IC E+ D          TG +   K  H  C+QRW  E  R
Sbjct: 27  TECQICLEKIDDNGGIVAMPDTGMLNLEKMFHEQCIQRWRREHTR 71

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>MIF2_YEAST (P35201) Protein MIF2|
          Length = 549

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 28/120 (23%), Positives = 51/120 (42%)
 Frame = -1

Query: 402 LSPTAKKECPVMGSAVVSLDEELLGAPVTSMGSGTIRRSTLSIR*SFTIATK*QIFEQKN 223
           L+   K   P    +  S D+E++ +P +  G G+ R S LS + +F            N
Sbjct: 61  LNGDTKNVLPPFLQSYKSQDDEVVQSP-SGKGDGSRRSSLLSHQSNF--------LSPAN 111

Query: 222 SF*DPVRSAQSPESDC*INLSVNSTITKRMKKFSYSTMRHTSVLGER*EAPNIRAPPSRV 43
            F +P+      E +        + IT+++ K +Y     T    +  E+P++R  P R+
Sbjct: 112 DF-EPIEEEPEQEENDIRGNDFATPITQKLSKPTYKRKYSTRYSLDTSESPSVRLTPDRI 170

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>CUTL1_MOUSE (P53564) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP) (Homeobox protein Cux)
          Length = 1515

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 302  PEPIEVTGAPKSSSSRDTTALPITGHSFFAVGD--SMVPE 415
            PEP +    P +S S+ TT LP++GHS  ++ +  +M PE
Sbjct: 1085 PEPSD----PPASDSQPTTPLPLSGHSALSIQELVAMSPE 1120

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>PURA_PSEAE (Q9HUM6) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 430

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -1

Query: 423 GSSSGTMLSPTAKKECPVMGSAVVSLDEELLGAPVTSMGSGTIRRSTLSIR*SF 262
           G S  T+ + T + E P    A +   EEL+GAP+  + +G  R  T+ +R  F
Sbjct: 377 GWSESTVGAKTLE-ELPANARAYIKRVEELVGAPIDIISTGPDRNETIILRHPF 429

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>CD22_PANTR (Q9N1E6) B-cell receptor CD22 precursor (Siglec-2) (Fragment)|
          Length = 332

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 160 CQFNNYEADEEIF-LFHNEAHQRPW*EIRGTKYSSSTFEGRTPSSLAR 20
           C +   + D E F LFHN  + +   +  GT+   ST +G+ PS   R
Sbjct: 44  CTYRALDRDLESFILFHNPEYSKNTSKFDGTRLYESTKDGKVPSEQKR 91

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>CD22_PANPA (Q9N1E5) B-cell receptor CD22 precursor (Siglec-2) (Fragment)|
          Length = 332

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 160 CQFNNYEADEEIF-LFHNEAHQRPW*EIRGTKYSSSTFEGRTPSSLAR 20
           C +   + D E F LFHN  + +   +  GT+   ST +G+ PS   R
Sbjct: 44  CTYRALDRDLESFILFHNPEYNKNTSKFDGTRLYESTEDGKVPSEQKR 91

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>PURA_LEGPA (Q5X7Q5) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 431

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 393 TAKKECPVMGSAVVSLDEELLGAPVTSMGSGTIRRSTLSIR*SF 262
           T   + P    A +   EE+LG P+  + +G  R ST+++R  F
Sbjct: 387 TVMSDLPANARAYLKRIEEILGIPIDLLSTGPERDSTITLRGPF 430

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>LRP2_HUMAN (P98164) Low-density lipoprotein receptor-related protein 2|
           precursor (Megalin) (Glycoprotein 330) (gp330)
          Length = 4655

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = +2

Query: 449 ICQEEDDIKNLESPCACTGSVKYAHRACVQRW-CNEKGRC 565
           +C  EDD K+      C       H+   + W C E GRC
Sbjct: 240 VCDGEDDCKDNGDEDGCESGPHDVHKCSPREWSCPESGRC 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,949,905
Number of Sequences: 219361
Number of extensions: 1838551
Number of successful extensions: 4666
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 4482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4665
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result