ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3e18 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 202 bits (515), Expect = 3e-52 Identities = 101/159 (63%), Positives = 126/159 (79%) Frame = +1 Query: 1 CLRNKAEMVILEAARAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAST 180 CLRNK EMVI EAA AI L T+REL PA++VLQLF SS KP LR+AAVRTLNKVA Sbjct: 258 CLRNKHEMVIYEAASAIIHLPNCTARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMK 317 Query: 181 HPLAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIADEFKI 360 HP AVT CN+D+E+LI+D NRS KTG+ESSVDRLMKQ+++F+S+I+DEFK+ Sbjct: 318 HPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKV 377 Query: 361 VVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKA 477 VVV+AI +LC K+P K+ +M FLSN+LR++GGF+YKKA Sbjct: 378 VVVQAISALCHKYPRKHSVMMTFLSNMLRDDGGFEYKKA 416
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 202 bits (513), Expect = 6e-52 Identities = 100/159 (62%), Positives = 126/159 (79%) Frame = +1 Query: 1 CLRNKAEMVILEAARAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAST 180 CLRNK EMVI EAA AI L T+REL PA++VLQLF SS KP LR+AAVRTLNKVA Sbjct: 258 CLRNKHEMVIYEAASAIIHLPNCTARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMK 317 Query: 181 HPLAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIADEFKI 360 HP AVT CN+D+E+LI+D NRS KTG+ESSVDRLMKQ+++F+S+I+DEFK+ Sbjct: 318 HPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKV 377 Query: 361 VVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKA 477 VVV+AI +LC K+P K+ +M FLSN+LR++GGF+YK+A Sbjct: 378 VVVQAISALCQKYPRKHSVMMTFLSNMLRDDGGFEYKRA 416
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 201 bits (510), Expect = 1e-51 Identities = 98/159 (61%), Positives = 126/159 (79%) Frame = +1 Query: 1 CLRNKAEMVILEAARAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAST 180 CLRNK EMV+ EAA AI +L G +++EL PA++VLQLF SS K LR+AAVRTLNKVA Sbjct: 258 CLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 Query: 181 HPLAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIADEFKI 360 HP AVT CN+D+E+L++D NRS KTG+ESS+DRLMKQ+++FMS+I+DEFK+ Sbjct: 318 HPSAVTACNLDLENLVTDSNRSIATLAITTLLKTGSESSIDRLMKQISSFMSEISDEFKV 377 Query: 361 VVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKA 477 VVV+AI +LC K+P K+ LMNFL +LREEGGF+YK+A Sbjct: 378 VVVQAISALCQKYPRKHAVLMNFLFTMLREEGGFEYKRA 416
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 199 bits (506), Expect = 4e-51 Identities = 97/159 (61%), Positives = 126/159 (79%) Frame = +1 Query: 1 CLRNKAEMVILEAARAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAST 180 CLRNK EMV+ EAA AI +L G +++EL PA++VLQLF SS K LR+AAVRTLNKVA Sbjct: 258 CLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 Query: 181 HPLAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIADEFKI 360 HP AVT CN+D+E+L++D NRS KTG+E S+DRLMKQ+++FMS+I+DEFK+ Sbjct: 318 HPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSEGSIDRLMKQISSFMSEISDEFKV 377 Query: 361 VVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKA 477 VVV+AI +LC K+P K+ LMNFL ++LREEGGF+YK+A Sbjct: 378 VVVQAISALCQKYPRKHAVLMNFLFSMLREEGGFEYKRA 416
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 179 bits (454), Expect = 4e-45 Identities = 89/159 (55%), Positives = 116/159 (72%) Frame = +1 Query: 1 CLRNKAEMVILEAARAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAST 180 CLR+K+EMV+ EAARAI L T E+ PAIT LQ+ +S K +RFAAVRTLNKVA Sbjct: 253 CLRHKSEMVVYEAARAIVSLPQTTPSEIQPAITALQMCCTSPKAAVRFAAVRTLNKVAMA 312 Query: 181 HPLAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIADEFKI 360 HP AV +CN+D+E I+D NRS KTG ESSV+RLM+Q+ F+++I+DEFKI Sbjct: 313 HPNAVMSCNVDLEKFITDPNRSIATLAITTLLKTGAESSVERLMQQIAGFVNEISDEFKI 372 Query: 361 VVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKA 477 VVV+AIRSLC ++P K+ +M FL+ +LR +G +DYKKA Sbjct: 373 VVVDAIRSLCSRYPRKHTVMMPFLAKMLRSDGSYDYKKA 411
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 172 bits (437), Expect = 4e-43 Identities = 84/158 (53%), Positives = 117/158 (74%) Frame = +1 Query: 4 LRNKAEMVILEAARAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVASTH 183 L++K +MV LE AR + L ++ +L P ++VL++FLSS + RF+A+RTLN++A T Sbjct: 279 LKSKGDMVNLEVARNMVRLKNISDDDLQPVVSVLKIFLSSHRSATRFSAIRTLNELAMTR 338 Query: 184 PLAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIADEFKIV 363 P V +CN+++ESLI+D NRS KTGN+ SVDRLMKQ+ FMSDI+D FKI+ Sbjct: 339 PHLVHSCNLNIESLITDVNRSIATYAITTLLKTGNDESVDRLMKQIVTFMSDISDNFKII 398 Query: 364 VVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKA 477 VV+AIRSLCLKFP K S++ FLSNIL +EGG+++K+A Sbjct: 399 VVDAIRSLCLKFPRKQDSMLTFLSNILCDEGGYEFKRA 436
>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 935 Score = 122 bits (305), Expect = 8e-28 Identities = 63/164 (38%), Positives = 101/164 (61%), Gaps = 6/164 (3%) Frame = +1 Query: 4 LRNKAEMVILEAARAITDLNGVTSRELTP-----AITVLQLFLSSSKPVLRFAAVRTLNK 168 L NK E V LE A+ IT SR + P AI+ LQ L+ + RFAA+R LN+ Sbjct: 272 LSNKFESVQLETAKLITSFATRNSRLVAPELYAAAISALQSLLTVPRVSSRFAALRILNR 331 Query: 169 VASTHPLAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIAD 348 ++ P + CN ++ESLI+D NR+ KTG ++ L+ +TNF+ D++D Sbjct: 332 ISMVSPEKIVVCNPELESLINDSNRNISTYAITTLLKTGTSKNISSLISTITNFIHDVSD 391 Query: 349 EFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILR-EEGGFDYKKA 477 +FKI++++A+R+L L FP +++S++NFL ++L+ EGGF +K + Sbjct: 392 DFKIIIIDAVRTLSLNFPQEWKSILNFLIDVLKNSEGGFKFKNS 435
>AP1G1_SCHPO (Q9UU81) AP-1 complex subunit gamma-1 (Gamma(1)-adaptin) (Clathrin| assembly protein large gamma-1 chain) (Clathrin assembly protein complex 1 gamma-1 large chain) Length = 865 Score = 47.0 bits (110), Expect = 3e-05 Identities = 32/152 (21%), Positives = 67/152 (44%) Frame = +1 Query: 7 RNKAEMVILEAARAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVASTHP 186 RN ++ +A R I DLN +S + + +L FL + R+ A+ L V ++ Sbjct: 310 RNAGNAILYQAVRTILDLNSDSSLRVL-GVNILAKFLGNRDNNTRYVALNMLKLVVNSEE 368 Query: 187 LAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIADEFKIVV 366 AV + + ++D + S NE++V +++++ +F+ +++DE + Sbjct: 369 NAVQRHRSTILACLNDVDSSIQSRALELSTFLVNEANVRFMVRELLSFLDNVSDELRGST 428 Query: 367 VEAIRSLCLKFPLKYRSLMNFLSNILREEGGF 462 + I + F R + L + + G F Sbjct: 429 AQYITEVTNAFAPNKRWHFDTLLRVFKSAGNF 460
>AP1G1_USTMA (Q99128) AP-1 complex subunit gamma-1 (Gamma(1)-adaptin) (Clathrin| assembly protein large gamma-1 chain) (Clathrin assembly protein complex 1 gamma-1 large chain) (Gamma-ADA) Length = 853 Score = 41.2 bits (95), Expect = 0.002 Identities = 35/152 (23%), Positives = 66/152 (43%) Frame = +1 Query: 7 RNKAEMVILEAARAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVASTHP 186 +N ++ E I +++ + AI +L FLS+ +R+ A+ TL+KV S Sbjct: 284 KNVGNSILYETVLTILEIDADNGLRVM-AINILGKFLSNRDNNIRYVALNTLSKVVSMDT 342 Query: 187 LAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIADEFKIVV 366 AV + + D + S NES+V L +++ +F+ +EFK+ + Sbjct: 343 NAVQRHRNIILDCLRDGDISIRRRALELSYALINESNVRVLTRELLSFLEVADNEFKLGM 402 Query: 367 VEAIRSLCLKFPLKYRSLMNFLSNILREEGGF 462 I KF R ++ + +L+ G + Sbjct: 403 TTQICLAAEKFAPNKRWHIDTVLRVLKLAGNY 434
>AP1G1_MOUSE (P22892) AP-1 complex subunit gamma-1 (Adapter-related protein| complex 1 gamma-1 subunit) (Gamma-adaptin) (Adaptor protein complex AP-1 gamma-1 subunit) (Golgi adaptor HA1/AP1 adaptin subunit gamma-1) (Clathrin assembly protein complex 1 gamm Length = 821 Score = 36.2 bits (82), Expect = 0.056 Identities = 30/152 (19%), Positives = 59/152 (38%) Frame = +1 Query: 7 RNKAEMVILEAARAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVASTHP 186 +N ++ E I D+ + + AI +L FL ++ +R+ A+ +L K T Sbjct: 281 KNVGNAILYETVLTIMDIKSESGLRVL-AINILGRFLLNNDKNIRYVALTSLLKTVQTDH 339 Query: 187 LAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIADEFKIVV 366 AV + + D + S N +++ +MK++ F+ EFK Sbjct: 340 NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADC 399 Query: 367 VEAIRSLCLKFPLKYRSLMNFLSNILREEGGF 462 I K+ R ++ + +L G + Sbjct: 400 ASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSY 431
>AP1G1_HUMAN (O43747) AP-1 complex subunit gamma-1 (Adapter-related protein| complex 1 gamma-1 subunit) (Gamma-adaptin) (Adaptor protein complex AP-1 gamma-1 subunit) (Golgi adaptor HA1/AP1 adaptin subunit gamma-1) (Clathrin assembly protein complex 1 gamm Length = 821 Score = 36.2 bits (82), Expect = 0.056 Identities = 30/152 (19%), Positives = 59/152 (38%) Frame = +1 Query: 7 RNKAEMVILEAARAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVASTHP 186 +N ++ E I D+ + + AI +L FL ++ +R+ A+ +L K T Sbjct: 281 KNVGNAILYETVLTIMDIKSESGLRVL-AINILGRFLLNNDKNIRYVALTSLLKTVQTDH 339 Query: 187 LAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIADEFKIVV 366 AV + + D + S N +++ +MK++ F+ EFK Sbjct: 340 NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADC 399 Query: 367 VEAIRSLCLKFPLKYRSLMNFLSNILREEGGF 462 I K+ R ++ + +L G + Sbjct: 400 ASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSY 431
>GLYA_IDILO (Q5QXT4) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 418 Score = 31.2 bits (69), Expect = 1.8 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Frame = +1 Query: 289 ESSVDRLMKQMTNFMSDIADEFKIVVV-EAIRSLCLKFPL 405 E+ +++ + + + DIADE KI V E +++LC KFP+ Sbjct: 377 EAEAEQVANWICDVLDDIADESKINQVREQVKALCAKFPV 416
>FIMB_YEAST (P32599) Fimbrin (ABP67)| Length = 642 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Frame = +1 Query: 313 KQMTNFMSDIAD--EFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKK 474 +++TNF D++D + I++ + +LC K PL+ LM +L+ D +K Sbjct: 308 RRVTNFSKDVSDGENYTILLNQLDPALCSKAPLQTTDLMERAEQVLQNAEKLDCRK 363
>ADCY9_CHICK (Q9DGG6) Adenylate cyclase type 9 (EC 4.6.1.1) (Adenylate cyclase| type IX) (ATP pyrophosphate-lyase 9) (Adenylyl cyclase 9) Length = 1334 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/63 (31%), Positives = 33/63 (52%) Frame = -2 Query: 383 DLIASTTTILNSSAMSDIKLVICFIKRSTLDSLPVLSSVVIARVAMLLF*SEIKLSISML 204 D+ STT L I V CF+K + S P ++VV+ +A+LL + +S+ M+ Sbjct: 772 DVFLSTTVFL-------ILSVTCFLKHGMVASPPPPAAVVVFVIAILLEVLSLVISVRMV 824 Query: 203 QFV 195 F+ Sbjct: 825 FFL 827
>RPOB_EHRCR (Q8KWX2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1380 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/56 (33%), Positives = 31/56 (55%) Frame = +1 Query: 283 GNESSVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE 450 G + ++K +NF I + F ++V E +RSLCL LK +FLSN +++ Sbjct: 1328 GRVKIYESIIKGDSNFECGIPESFNVMVKE-LRSLCLDVALKQDK--DFLSNEVKD 1380
>AP4E1_HUMAN (Q9UPM8) AP-4 complex subunit epsilon-1 (Adapter-related protein| complex 4 epsilon-1 subunit) (Epsilon subunit of AP-4) (AP-4 adapter complex epsilon subunit) Length = 1137 Score = 29.3 bits (64), Expect = 6.9 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +1 Query: 28 ILEAARAITDLNGVTSRELTPAI-TVLQLFLSSSKPVLRFAAVRTLNKVASTHPLAVTNC 204 ++E A+T ++ + RE+ PA+ +++ L SK ++R AV L K P V + Sbjct: 147 LVEVCMALTVVSQIFPREMIPAVLPLIEDKLQHSKEIVRRKAVLALYKFHLIAPNQVQHI 206 Query: 205 NIDMESLISDQN 240 +I + D++ Sbjct: 207 HIKFRKALCDRD 218
>ATM_ASPOR (Q2U639) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase tel1) (Telomere length regulation protein 1) (ATM homolog) Length = 2925 Score = 28.9 bits (63), Expect = 9.0 Identities = 11/32 (34%), Positives = 21/32 (65%) Frame = +1 Query: 307 LMKQMTNFMSDIADEFKIVVVEAIRSLCLKFP 402 LM Q+T+ + D+ DEF+ ++ I +C++ P Sbjct: 2423 LMNQLTSRLLDVPDEFQKMLFSLITRICVEHP 2454
>MATK_LOTJA (Q9BBU2) Maturase K (Intron maturase)| Length = 508 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +1 Query: 280 TGNESSVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNI 441 + N+S+ +R ++ NF S I E ++VE + SL L L+ ++ N+ Sbjct: 73 SANDSNKNRFLRYNKNFYSQIISEGFAIIVEILFSLQLSSSLEEAEIIKSYKNL 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,463,450 Number of Sequences: 219361 Number of extensions: 1204793 Number of successful extensions: 2561 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2533 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2561 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
