>ARHG4_HUMAN (Q9NR80) Rho guanine nucleotide exchange factor 4 (APC-stimulated|
           guanine nucleotide exchange factor) (Asef)
          Length = 657

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 174 NGQNNDPSSDMNPLVTSTEPVDDSSQLASHSGSVDGGTQAK 296
           +G+   P+S +   V   EP DD + LA +SG+ DGG +A+
Sbjct: 205 DGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAEDGGAEAQ 245

>RHO_PSEFL (P52155) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 419

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 10/188 (5%)
 Frame = +3

Query: 33  KANLGSSVEVNGQNIDMIPDKKAFASTVLLGVPSQSHTGSIDDCTQVNGQNNDPSSDMNP 212
           +A  GS+ ++ G+ ID+          +++  P    T  + +    N   N+P   +  
Sbjct: 148 EAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPPKAGKTIMLQNIA-ANIARNNPEVHLIV 206

Query: 213 LVTSTEPVDDSSQLASHSGSVDGGTQAKPPTIFESVGE-----TAQVNESRPSL-----P 362
           L+    P + +    +  G V   T  +PPT    V E       ++ E +  +      
Sbjct: 207 LLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDS 266

Query: 363 LAEFLAARNVFWNGTSKVCCGNDDAAIPSFQRTLTGAHKNLEDGDSKTSQKNPIFQLSLL 542
           +     A N     + KV  G  DA      +   GA +N+E+G S T     I   +L+
Sbjct: 267 ITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRFFGAARNIEEGGSLT-----IIATALV 321

Query: 543 KKALEVDE 566
           +   ++DE
Sbjct: 322 ETGSKMDE 329

>TTKA_DROME (P42282) Protein tramtrack, alpha isoform (Tramtrack p88)|
           (Repressor protein fushi tarazu)
          Length = 813

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 24/100 (24%), Positives = 42/100 (42%)
 Frame = +3

Query: 63  NGQNIDMIPDKKAFASTVLLGVPSQSHTGSIDDCTQVNGQNNDPSSDMNPLVTSTEPVDD 242
           N  N   +P + +  S+ L+    +     +   +   G + D     N +  S++  + 
Sbjct: 172 NAGNTPTLPVQPSLLSSALMPKRKRGRPRKLSGSSNGTGNDYDDFDRENMMNDSSDLGNG 231

Query: 243 SSQLASHSGSVDGGTQAKPPTIFESVGETAQVNESRPSLP 362
                S+SG+ DG    +P     + G T  +NESR SLP
Sbjct: 232 KMCNESYSGNDDGSDDNQP-----NAGHTDDLNESRDSLP 266

>RHO_MYCTU (P66028) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 602

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 10/154 (6%)
 Frame = +3

Query: 75  IDMIPDKKAFASTVLLGVPSQSHTGSIDDCTQVNGQNNDPSSDMNPLVTSTEPVDDSSQL 254
           ID+I         +++  P    T  + D      +NN P   +  ++    P + +   
Sbjct: 337 IDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNN-PECHLMVVLVDERPEEVTDMQ 395

Query: 255 ASHSGSVDGGTQAKPPTIFESVGETA------QVNESRPSLPLAEFLAARNVFWNGTS-- 410
            S  G V   T  +PP+   SV E A       V + +  + L + +      +N  S  
Sbjct: 396 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 455

Query: 411 --KVCCGNDDAAIPSFQRTLTGAHKNLEDGDSKT 506
             ++  G  D+      +   GA +N+E+G S T
Sbjct: 456 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLT 489

>RHO_MYCBO (P66029) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 602

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 10/154 (6%)
 Frame = +3

Query: 75  IDMIPDKKAFASTVLLGVPSQSHTGSIDDCTQVNGQNNDPSSDMNPLVTSTEPVDDSSQL 254
           ID+I         +++  P    T  + D      +NN P   +  ++    P + +   
Sbjct: 337 IDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNN-PECHLMVVLVDERPEEVTDMQ 395

Query: 255 ASHSGSVDGGTQAKPPTIFESVGETA------QVNESRPSLPLAEFLAARNVFWNGTS-- 410
            S  G V   T  +PP+   SV E A       V + +  + L + +      +N  S  
Sbjct: 396 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 455

Query: 411 --KVCCGNDDAAIPSFQRTLTGAHKNLEDGDSKT 506
             ++  G  D+      +   GA +N+E+G S T
Sbjct: 456 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLT 489

>MUC18_MOUSE (Q8R2Y2) Cell surface glycoprotein MUC18 precursor|
           (Melanoma-associated antigen MUC18) (Melanoma cell
           adhesion molecule) (Gicerin)
          Length = 648

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 51  SVEVNGQNIDMIPDKKAFASTV-LLGVPSQSHTGSIDDCTQVNGQNNDPSSDMNPLVTST 227
           S  VNG   +  PD +   ST+ +L  P    TG+  +CT  N   ++ ++ +  LVT T
Sbjct: 465 SWNVNGSATEWNPDPQTVVSTLNVLVTPELLETGA--ECTASNSLGSNTTTIVLKLVTLT 522

Query: 228 EPVDDSSQ 251
             + DSSQ
Sbjct: 523 TLIPDSSQ 530

>TTKB_DROME (P17789) Protein tramtrack, beta isoform (Tramtrack p69) (Repressor|
           protein fushi tarazu)
          Length = 643

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 24/100 (24%), Positives = 42/100 (42%)
 Frame = +3

Query: 63  NGQNIDMIPDKKAFASTVLLGVPSQSHTGSIDDCTQVNGQNNDPSSDMNPLVTSTEPVDD 242
           N  N   +P + +  S+ L+    +     +   +   G + D     N +  S++  + 
Sbjct: 172 NAGNTPTLPVQPSLLSSALMPKRKRGRPRKLSGSSNGTGNDYDDFDRENMMNDSSDLGNG 231

Query: 243 SSQLASHSGSVDGGTQAKPPTIFESVGETAQVNESRPSLP 362
                S+SG+ DG    +P     + G T  +NESR SLP
Sbjct: 232 KMCNESYSGNDDGSDDNQP-----NAGHTDDLNESRDSLP 266

>NOL4_MOUSE (P60954) Nucleolar protein 4|
          Length = 523

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
 Frame = +3

Query: 135 QSHTGSIDDCTQVNGQNNDPSSDMNPLVTSTEPV-----DDSSQLAS-------HSGSVD 278
           +S    + D T+++  N+D SS++   + S + V     DDS+  +S       HS +  
Sbjct: 105 ESDEFDMSDSTRMSAVNSDLSSNLEERMQSPQTVHGQQDDDSAAESSNGNETLGHSSAAS 164

Query: 279 GGTQAKPPTIFESVGETAQVNESRP 353
           GG   + P    S G+T    E +P
Sbjct: 165 GGAHGREPEDSSSDGKTGLEQEEQP 189

>YKZA_SCHPO (Q9UTI1) Hypothetical protein C15E1.10 in chromosome I|
          Length = 265

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 10/119 (8%)
 Frame = +3

Query: 138 SHTGSIDDCTQVNGQNNDPSSDMNPLVTSTEPVDDSSQLASHSGSVDGGT---------- 287
           ++T S    T++   ++D   ++  LV    PVD  ++LA H+      T          
Sbjct: 77  ANTSSNITATRIFRLDDDQPWNLESLVAEVCPVDTDNRLAEHAARTAKDTSANELNYESY 136

Query: 288 QAKPPTIFESVGETAQVNESRPSLPLAEFLAARNVFWNGTSKVCCGNDDAAIPSFQRTL 464
           Q K    F   G    +  S+P  P    + A +++  G      GND   IP+F   +
Sbjct: 137 QEKSRAPFGFAGPFGAMPGSQPMFP---SIGASDLYPAGIGGSDMGNDGGMIPTFNHPI 192

>MUC18_RAT (Q9EPF2) Cell surface glycoprotein MUC18 precursor|
           (Melanoma-associated antigen MUC18) (Melanoma cell
           adhesion molecule) (Gicerin)
          Length = 648

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
 Frame = +3

Query: 51  SVEVNGQNIDMIPDKKAFASTV-LLGVPSQSHTGSIDDCTQVNGQNNDPSSDMNPLVTST 227
           S  +NG   +  PD +   ST+ +L  P    TG+  +CT  N   ++ +  +  LVT T
Sbjct: 465 SWNINGSATEWNPDPQTVVSTLNVLVTPELLETGA--ECTASNSLGSNTTVIILKLVTLT 522

Query: 228 EPVDDSSQ--------LASHSGSVDGGTQAKPP 302
               DSSQ        ++ HS +    T+ K P
Sbjct: 523 TLTPDSSQTTGLSTPTVSPHSRANSTSTEKKLP 555

>LMO7_HUMAN (Q8WWI1) LIM domain only protein 7 (LOMP) (F-box only protein 20)|
          Length = 1683

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 123  GVPSQSHTGSIDDCTQVNGQNNDPSSDMNPLVTSTEPVDDSSQLASHSGS 272
            G+ S   + ++DD  + NG   D     N +V++  P  D+SQLAS   S
Sbjct: 923  GISSLPRSYTMDDAWKYNGDIEDIKRTPNNVVSTPAPSPDASQLASSLSS 972

>TERT_MOUSE (O70372) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase|
           catalytic subunit)
          Length = 1122

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/36 (50%), Positives = 18/36 (50%)
 Frame = -2

Query: 570 VPHQPLKLS*VAKVGRLGSSGLFCCHHLPSSYVLLS 463
           VP     LS   KV  L  SG  CC H PSS  LLS
Sbjct: 282 VPTAEKDLSSKGKVSDLSLSGSVCCKHKPSSTSLLS 317

>MUC13_RAT (P97881) Mucin-13 precursor|
          Length = 547

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +3

Query: 129 PSQSHTGSIDDCTQVNGQNNDPSSDMNPLVTSTEPVDDSSQLASHSGSVDGGTQAKPPTI 308
           P+ + T       Q  G    PSS   P  T+T+P   +SQ    +    GG  +   T+
Sbjct: 92  PTTTATQPTSTSFQTPGTTQLPSSTSTPTTTATQPTSTASQTPG-TTQPPGGASSPTTTV 150

Query: 309 FESVGETAQ 335
            +  G ++Q
Sbjct: 151 TQPTGSSSQ 159

>YMH6_YEAST (Q03631) Putative 107.6 kDa transcriptional regulatory protein in|
            CPR3-HMG1 intergenic region
          Length = 944

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +3

Query: 132  SQSHTGSIDDCTQVNGQNNDPSSDMNPLVTSTEPVDDSSQLASHSGSVDGGTQAKPPTIF 311
            +Q+ T   D+   V  +  D ++ MN  + ST  +++S     H  S+ G T   PP I 
Sbjct: 834  NQNITAVPDEMLPVYSRVRDDTAAMNLNINSTSYMNESPH--EHRESMTGTTLLPPPFIS 891

Query: 312  ESVGETAQVNESRPS 356
              V  +A     +PS
Sbjct: 892  NDVTNSADSTNIKPS 906

>SERA_PLAF7 (Q9TY95) Serine-repeat antigen protein precursor (p126) (111 kDa|
           antigen)
          Length = 997

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +3

Query: 135 QSHTGSIDDCTQV----NGQNNDPSSDMNPLVTSTEPVDDSSQLASHSGSVDGGTQAKPP 302
           +S++GS++    V    NG   +  S    +   TEP+ DSS  +S S S    + +   
Sbjct: 167 ESNSGSLEKKKYVKLPSNGTTGEQGSSTGTVRGDTEPISDSSSSSSSSSSSSSSSSSSSS 226

Query: 303 TIFESVGETAQVN 341
           +   S  E+   N
Sbjct: 227 SSSSSSSESLPAN 239

>CO6A3_HUMAN (P12111) Collagen alpha-3(VI) chain precursor|
          Length = 3176

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +3

Query: 168  QVNGQNNDPSSDMNPLVTSTEPVDDSSQLASHSGSVDGGTQAKPPTIFESVGETAQVNES 347
            QVN  NN  SS  +  VT+T+PV  +  + + +  V   T  KP TI           + 
Sbjct: 2855 QVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVT--TTTKPVTIINQPSVKPAAAKP 2912

Query: 348  RPSLPLA 368
             P+ P+A
Sbjct: 2913 APAKPVA 2919

>ALS1_CANAL (P46590) Agglutinin-like protein 1 precursor|
          Length = 1260

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 120  LGVPSQSHTGSIDDCTQVNGQNNDPSSDMNPLVT-STEPVDDSSQLASHSGSVDGGTQAK 296
            L   S S T  I   +Q  G N D +S  NP+ T +T  +  +S+  + SGS +  + + 
Sbjct: 1022 LSTTSNSITEDITT-SQPTGDNGDNTSSTNPVPTVATSTLASASEEDNKSGSHESASTSL 1080

Query: 297  PPTIFESVGET 329
             P++ E+ G T
Sbjct: 1081 KPSMGENSGLT 1091

>ONEC_DROME (Q9NJB5) Homeobox protein onecut|
          Length = 1081

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 10/126 (7%)
 Frame = +3

Query: 138 SHTGSIDDCTQVNGQNNDPSSDMNPLVTSTE-----PVDDSSQLASHSGSVDGGTQAKPP 302
           SH+ S    T VN + + P        T T      P+   S+  ++SG + GG      
Sbjct: 312 SHS-SYQTLTSVNDRLSSPGFSQTSYATLTPIQPLPPISTMSEKFAYSGHISGGDSGDTD 370

Query: 303 TIFESVG----ETAQV-NESRPSLPLAEFLAARNVFWNGTSKVCCGNDDAAIPSFQRTLT 467
              +  G    E  +V N+S  +       +      N TS VC  ND ++  +    + 
Sbjct: 371 VNGDGAGGGVVEVGEVTNQSSEATGTVSISSG-----NATSSVCSNNDCSSFSALSMPIG 425

Query: 468 GAHKNL 485
             H  L
Sbjct: 426 SGHLGL 431

>EF2_KLULA (Q6CPQ9) Elongation factor 2 (EF-2)|
          Length = 842

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
 Frame = +3

Query: 45  GSSVEVNGQNI------DMIPDKKAFASTVLLGVPS----------QSHTGSIDDCTQVN 176
           G   E+ G+N+        +P   A    ++L +PS          Q + G  DD   + 
Sbjct: 309 GDEKELEGKNLLKVVMRKFLPAADALLEMIILHLPSPVTAQNYRAEQLYEGPSDDPACIA 368

Query: 177 GQNNDPSSDMNPLVTSTEPVDDSSQLASHSGSVDGGT 287
            +N DP SD+   V+   P  D  +  +  G V  GT
Sbjct: 369 IKNCDPKSDLMLYVSKMVPTSDKGRFYAF-GRVFAGT 404

>SERA_PLAFG (P69192) Serine-repeat antigen protein precursor (p126) (111 kDa|
           antigen)
          Length = 989

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +3

Query: 135 QSHTGSIDDCTQV----NGQNNDPSSDMNPLVTSTEPVDDSSQLASHSGSVDGGTQAKPP 302
           +S++GS++    V    NG   +  S    +   TEP+ DSS  +S S S    + +   
Sbjct: 151 ESNSGSLEKKKYVKLPSNGTTGEQGSSTGTVRGDTEPISDSSS-SSSSSSSSSSSSSSSS 209

Query: 303 TIFESVGETAQVNESRPSLP 362
           +   S   ++  + S  SLP
Sbjct: 210 SSSSSSSSSSSSSSSSESLP 229

>SERA_PLAFD (P69193) Serine-repeat antigen protein precursor (p126) (111 kDa|
           antigen)
          Length = 989

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +3

Query: 135 QSHTGSIDDCTQV----NGQNNDPSSDMNPLVTSTEPVDDSSQLASHSGSVDGGTQAKPP 302
           +S++GS++    V    NG   +  S    +   TEP+ DSS  +S S S    + +   
Sbjct: 151 ESNSGSLEKKKYVKLPSNGTTGEQGSSTGTVRGDTEPISDSSS-SSSSSSSSSSSSSSSS 209

Query: 303 TIFESVGETAQVNESRPSLP 362
           +   S   ++  + S  SLP
Sbjct: 210 SSSSSSSSSSSSSSSSESLP 229

>ATG11_DEBHA (Q6BRA6) Autophagy-related protein 11|
          Length = 1282

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 2/146 (1%)
 Frame = +3

Query: 153  IDDCTQVNGQNNDPSSDMNPLVTSTEPVDDSSQLASHSGSVDGGTQAKPPTIFE--SVGE 326
            +DD  ++ G  +D  S  N    S+E  D+ S  A+ +GSV        P      SV E
Sbjct: 1017 VDDINKIIGWVDDIQSFKNISTKSSEDGDEKSCSANTAGSVSSSVIDDLPEEITNLSVEE 1076

Query: 327  TAQVNESRPSLPLAEFLAARNVFWNGTSKVCCGNDDAAIPSFQRTLTGAHKNLEDGDSKT 506
            T + N  R SL L +    R++F +    +    D      F+  +     N    DS  
Sbjct: 1077 TNKFN--RQSLELVKLF--RDIFKSSNGSISKFEDFINTIRFKENIC---INQNQDDSGV 1129

Query: 507  SQKNPIFQLSLLKKALEVDEGHGKFL 584
            S K   F L  + K  +  EG  K L
Sbjct: 1130 SNK---FFLGAITKRFKDVEGFAKKL 1152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,083,942
Number of Sequences: 219361
Number of extensions: 1868249
Number of successful extensions: 5097
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5092
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)