ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3h14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY224488.1| Oryza sativa (japonica cultivar-group) isolate 30... 70 9e-09
2dbj|AB117997.1| Oryza sativa (japonica cultivar-group) bip110 mR... 70 9e-09
3dbj|AK102933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
4dbj|AK073840.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
5dbj|AK061673.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
6ref|XM_380372.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 42 2.0
7dbj|AB220463.1| Macaca fascicularis mRNA, clone QflA-14990: simi... 42 2.0
8gb|AC093103.1| Drosophila melanogaster, chromosome 2L, region 35... 42 2.0
9gb|AC092246.1|AC092246 Drosophila melanogaster, chromosome 2L, r... 42 2.0
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
11gb|AC009464.8| Homo sapiens 12 BAC RP11-19E18 (Roswell Park Canc... 42 2.0
12gb|AF123716.1|AF123716 Rickettsia montanensis OmpB (ompB) gene, ... 42 2.0
13dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
14gb|AY107368.1| Zea mays PCO129627 mRNA sequence 42 2.0
15gb|AE003645.4| Drosophila melanogaster chromosome 2L, section 54... 42 2.0
16emb|AL645797.11| Mouse DNA sequence from clone RP23-153J5 on chr... 42 2.0
17emb|AL713885.1|CNS07YP2 Mus musculus chromosome 11 region in the... 42 2.0
18emb|AL713884.1|CNS07YP1 Mus musculus chromosome 11 region in the... 42 2.0
19emb|AL713841.1|CNS07YOV Mus musculus chromosome 11 region in the... 42 2.0
20gb|AE008659.1| Rickettsia conorii str. Malish 7, section 91 of 1... 40 8.0
21ref|XM_744521.1| Aspergillus fumigatus Af293 hypothetical protei... 40 8.0
22ref|XM_382798.1| Gibberella zeae PH-1 chromosome 1 conserved hyp... 40 8.0
23gb|AY331393.1| Rickettsia sp. BJ-90 outer membrane protein B (om... 40 8.0
24emb|AL109965.34|HS1121G12 Human DNA sequence from clone RP5-1121... 40 8.0
25gb|AC159820.2| Mus musculus BAC clone RP23-158K20 from chromosom... 40 8.0
26gb|AC163896.2| Glomus intraradices clone JGIATSX-9L7, complete s... 40 8.0
27gb|DQ365798.1| Rickettsia raoultii strain Khabarovsk OmpB (ompB)... 40 8.0
28gb|DQ365797.1| Rickettsia raoultii strain Marne OmpB (ompB) gene... 40 8.0
29gb|AC023282.8| Homo sapiens chromosome 10 clone RP11-257O17, com... 40 8.0
30gb|AC158611.7| Mus musculus 10 BAC RP23-29D19 (Roswell Park Canc... 40 8.0
31gb|AC018682.4| Homo sapiens BAC clone RP11-417F21 from 2, comple... 40 8.0
32gb|AF149110.1|AF149110 Rickettsia conorii outer membrane protein... 40 8.0
33gb|AC007738.2|AC007738 Homo sapiens BAC clone RP11-32P22 from 2,... 40 8.0
34gb|AF123723.2| Rickettsia slovaca OmpB (ompB) gene, partial cds 40 8.0
35gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC... 40 8.0
36gb|AF123726.1|AF123726 Rickettsia conorii strain Indian tick typ... 40 8.0
37gb|AF123724.1|AF123724 Rickettsia honei strain Thai tick typhus ... 40 8.0
38gb|AF123722.1|AF123722 Rickettsia sibirica OmpB (ompB) gene, par... 40 8.0
39gb|AF123721.1|AF123721 Rickettsia conorii strain Seven OmpB (omp... 40 8.0
40gb|AF123720.1|AF123720 Rickettsia sp. S OmpB (ompB) gene, partia... 40 8.0
41gb|AF123717.1|AF123717 Rickettsia parkeri OmpB (ompB) gene, part... 40 8.0
42gb|AF123715.1|AF123715 Rickettsia mongolotimonae OmpB (ompB) gen... 40 8.0
43gb|AF123712.1|AF123712 Israeli tick typhus rickettsia OmpB (ompB... 40 8.0
44gb|AF123711.1|AF123711 Rickettsia honei strain RB OmpB (ompB) ge... 40 8.0
45gb|AF123708.1|AF123708 Astrakhan rickettsia OmpB (ompB) gene, pa... 40 8.0
46gb|AF123706.1|AF123706 Rickettsia africae OmpB (ompB) gene, part... 40 8.0
47emb|AJ585045.1| Rickettsia sp. AL2003 partial ompB gene for oute... 40 8.0
48gb|AY643093.1| Rickettsia conorii subsp. caspia OmpB (ompB) gene... 40 8.0
49emb|X16353.1|RRP120 R.rickettsii ompB gene for outer membrane pr... 40 8.0
50gb|AC156031.2| Mus musculus BAC clone RP24-531B21 from 9, comple... 40 8.0
51dbj|AP006258.1| Homo sapiens genomic DNA, chromosome 11, clone:R... 40 8.0
52dbj|AP005639.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.0
53emb|CT030236.7| Mouse DNA sequence from clone RP23-445B11 on chr... 40 8.0
54gb|AC164630.6| Mus musculus 10 BAC RP23-153M4 (Roswell Park Canc... 40 8.0
55emb|AL669824.13| Mouse DNA sequence from clone RP23-396G1 on chr... 40 8.0 
>gb|AY224488.1| Oryza sativa (japonica cultivar-group) isolate 30843 putative
            ubiquitin-specific protease mRNA, partial cds
          Length = 2529

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                       
Query: 377  cacaaactttccaaactaaggatgctgttgtttcaaatggtgt 419
            |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 1502 cacaaactttcccaactaaggatgctattgtttcaaatggtgt 1544
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>dbj|AB117997.1| Oryza sativa (japonica cultivar-group) bip110 mRNA for BRI1-KD
           interacting protein 110, partial cds
          Length = 1791

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                      
Query: 377 cacaaactttccaaactaaggatgctgttgtttcaaatggtgt 419
           |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 528 cacaaactttcccaactaaggatgctattgtttcaaatggtgt 570
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>dbj|AK102933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114H16, full
            insert sequence
          Length = 3013

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                       
Query: 377  cacaaactttccaaactaaggatgctgttgtttcaaatggtgt 419
            |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 1749 cacaaactttcccaactaaggatgctattgtttcaaatggtgt 1791
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>dbj|AK073840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H15, full
            insert sequence
          Length = 2549

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                       
Query: 377  cacaaactttccaaactaaggatgctgttgtttcaaatggtgt 419
            |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 1285 cacaaactttcccaactaaggatgctattgtttcaaatggtgt 1327
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>dbj|AK061673.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G09, full
           insert sequence
          Length = 1583

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                      
Query: 377 cacaaactttccaaactaaggatgctgttgtttcaaatggtgt 419
           |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 291 cacaaactttcccaactaaggatgctattgtttcaaatggtgt 333
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>ref|XM_380372.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00196.1)
            partial mRNA
          Length = 1461

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 503  cggtgaaggctttgacgacga 523
            |||||||||||||||||||||
Sbjct: 1370 cggtgaaggctttgacgacga 1390
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>dbj|AB220463.1| Macaca fascicularis mRNA, clone QflA-14990: similar to Homo sapiens
            H2B histone family, member S (H2BFS), mRNA, NM_017445.1
          Length = 1937

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 444  tccagtttccagtgagaaaat 464
            |||||||||||||||||||||
Sbjct: 1638 tccagtttccagtgagaaaat 1658
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>gb|AC093103.1| Drosophila melanogaster, chromosome 2L, region 35X-36X, BAC clone
             BACR39O07, complete sequence
          Length = 153352

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 382   actttccaaactaaggatgct 402
             |||||||||||||||||||||
Sbjct: 61432 actttccaaactaaggatgct 61452
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>gb|AC092246.1|AC092246 Drosophila melanogaster, chromosome 2L, region 36X-36X, BAC clone
             BACR33C24, complete sequence
          Length = 202495

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 382   actttccaaactaaggatgct 402
             |||||||||||||||||||||
Sbjct: 47182 actttccaaactaaggatgct 47162
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 395     aggatgctgttgtttcaaatggtgt 419
               |||||||| ||||||||||||||||
Sbjct: 4225736 aggatgctattgtttcaaatggtgt 4225712
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>gb|AC009464.8| Homo sapiens 12 BAC RP11-19E18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 146945

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 439   ggaggtccagtttccagtgag 459
             |||||||||||||||||||||
Sbjct: 93020 ggaggtccagtttccagtgag 93040
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>gb|AF123716.1|AF123716 Rickettsia montanensis OmpB (ompB) gene, partial cds
          Length = 4884

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 239  tgggaaacaatacttctattg 259
            |||||||||||||||||||||
Sbjct: 3393 tgggaaacaatacttctattg 3413
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>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0554A06
          Length = 165311

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 395   aggatgctgttgtttcaaatggtgt 419
             |||||||| ||||||||||||||||
Sbjct: 70957 aggatgctattgtttcaaatggtgt 70933
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>gb|AY107368.1| Zea mays PCO129627 mRNA sequence
          Length = 1313

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 394 aaggatgctgttgtttcaaatggtg 418
           |||||| ||||||||||||||||||
Sbjct: 47  aaggattctgttgtttcaaatggtg 71
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>gb|AE003645.4| Drosophila melanogaster chromosome 2L, section 54 of 83 of the complete
             sequence
          Length = 262207

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 382   actttccaaactaaggatgct 402
             |||||||||||||||||||||
Sbjct: 77736 actttccaaactaaggatgct 77716
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>emb|AL645797.11| Mouse DNA sequence from clone RP23-153J5 on chromosome 11 Contains a
             novel gene and a CpG island, complete sequence
          Length = 190784

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 389   aaactaaggatgctgttgttt 409
             |||||||||||||||||||||
Sbjct: 80387 aaactaaggatgctgttgttt 80407
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>emb|AL713885.1|CNS07YP2 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
              clone 330D23 of library Caltech CITB-BAC from chromosome 11
              of Mus musculus (mouse)
          Length = 181075

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 389    aaactaaggatgctgttgttt 409
              |||||||||||||||||||||
Sbjct: 111720 aaactaaggatgctgttgttt 111700
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>emb|AL713884.1|CNS07YP1 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
             clone 205M5 of library Caltech CITB-BAC from chromosome 11
             of Mus musculus (mouse)
          Length = 120637

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 389   aaactaaggatgctgttgttt 409
             |||||||||||||||||||||
Sbjct: 51286 aaactaaggatgctgttgttt 51266
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>emb|AL713841.1|CNS07YOV Mus musculus chromosome 11 region in the Om locus area
            (D11Mit37-Scya6) clone 261D24 of library Caltech CITB-BAC
            from chromosome 11 of Mus musculus (mouse)
          Length = 92785

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 389  aaactaaggatgctgttgttt 409
            |||||||||||||||||||||
Sbjct: 8976 aaactaaggatgctgttgttt 8996
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>gb|AE008659.1| Rickettsia conorii str. Malish 7, section 91 of 114 of the complete
            genome
          Length = 11116

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 7437 gggaaacaatacttctattg 7418
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>ref|XM_744521.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g04830) partial
            mRNA
          Length = 1575

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    ccgcaaatgatggcaaagct 24
            ||||||||||||||||||||
Sbjct: 1045 ccgcaaatgatggcaaagct 1064
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>ref|XM_382798.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein
           (FG02622.1) partial mRNA
          Length = 2484

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 504 ggtgaaggctttgacgacgagcaa 527
           ||||||||| ||||||||||||||
Sbjct: 199 ggtgaaggcattgacgacgagcaa 222
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>gb|AY331393.1| Rickettsia sp. BJ-90 outer membrane protein B (ompB) gene, partial
            cds
          Length = 4884

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3394 gggaaacaatacttctattg 3413
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>emb|AL109965.34|HS1121G12 Human DNA sequence from clone RP5-1121G12 on chromosome 20 Contains the
             3' end of the C20orf104 gene, the SCAND1 gene for SCAN
             domain containing 1, the 5' end of the C20orf152 gene and
             two CpG islands, complete sequence
          Length = 105230

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   ctcaaacatgttccaagcca 339
             ||||||||||||||||||||
Sbjct: 31448 ctcaaacatgttccaagcca 31429
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>gb|AC159820.2| Mus musculus BAC clone RP23-158K20 from chromosome 9, complete sequence
          Length = 215017

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     aagcccttggacctcaaaat 90
              ||||||||||||||||||||
Sbjct: 212509 aagcccttggacctcaaaat 212528
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>gb|AC163896.2| Glomus intraradices clone JGIATSX-9L7, complete sequence
          Length = 38666

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  ccaagcttgaacttggttgg 356
            ||||||||||||||||||||
Sbjct: 3252 ccaagcttgaacttggttgg 3271
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>gb|DQ365798.1| Rickettsia raoultii strain Khabarovsk OmpB (ompB) gene, partial cds
          Length = 4890

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3400 gggaaacaatacttctattg 3419
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>gb|DQ365797.1| Rickettsia raoultii strain Marne OmpB (ompB) gene, partial cds
          Length = 4887

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3397 gggaaacaatacttctattg 3416
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>gb|AC023282.8| Homo sapiens chromosome 10 clone RP11-257O17, complete sequence
          Length = 168319

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     tcctgcctgccgcacagaaa 72
              ||||||||||||||||||||
Sbjct: 136895 tcctgcctgccgcacagaaa 136876
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>gb|AC158611.7| Mus musculus 10 BAC RP23-29D19 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 214923

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 459   gaaaatgaaggacttaacag 478
             ||||||||||||||||||||
Sbjct: 50313 gaaaatgaaggacttaacag 50294
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>gb|AC018682.4| Homo sapiens BAC clone RP11-417F21 from 2, complete sequence
          Length = 181405

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 544    ccaggacttgagcaagttga 563
              ||||||||||||||||||||
Sbjct: 167294 ccaggacttgagcaagttga 167313
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>gb|AF149110.1|AF149110 Rickettsia conorii outer membrane protein B (ompB) gene, partial cds
          Length = 3922

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 2401 gggaaacaatacttctattg 2420
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>gb|AC007738.2|AC007738 Homo sapiens BAC clone RP11-32P22 from 2, complete sequence
          Length = 183438

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    atggcaaagctgaaactgct 33
             ||||||||||||||||||||
Sbjct: 63880 atggcaaagctgaaactgct 63861
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>gb|AF123723.2| Rickettsia slovaca OmpB (ompB) gene, partial cds
          Length = 4887

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3397 gggaaacaatacttctattg 3416
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>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13,
             complete sequence
          Length = 102842

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   aagccaagcttgaacttggt 353
             ||||||||||||||||||||
Sbjct: 39493 aagccaagcttgaacttggt 39512
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>gb|AF123726.1|AF123726 Rickettsia conorii strain Indian tick typhus rickettsia OmpB (ompB)
            gene, partial cds
          Length = 4890

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3400 gggaaacaatacttctattg 3419
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>gb|AF123724.1|AF123724 Rickettsia honei strain Thai tick typhus rickettsia OmpB (ompB) gene,
            partial cds
          Length = 4887

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3397 gggaaacaatacttctattg 3416
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>gb|AF123722.1|AF123722 Rickettsia sibirica OmpB (ompB) gene, partial cds
          Length = 4887

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3397 gggaaacaatacttctattg 3416
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>gb|AF123721.1|AF123721 Rickettsia conorii strain Seven OmpB (ompB) gene, partial cds
          Length = 4890

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3400 gggaaacaatacttctattg 3419
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>gb|AF123720.1|AF123720 Rickettsia sp. S OmpB (ompB) gene, partial cds
          Length = 4884

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3394 gggaaacaatacttctattg 3413
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>gb|AF123717.1|AF123717 Rickettsia parkeri OmpB (ompB) gene, partial cds
          Length = 4887

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3397 gggaaacaatacttctattg 3416
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>gb|AF123715.1|AF123715 Rickettsia mongolotimonae OmpB (ompB) gene, partial cds
          Length = 4887

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3397 gggaaacaatacttctattg 3416
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>gb|AF123712.1|AF123712 Israeli tick typhus rickettsia OmpB (ompB) gene, partial cds
          Length = 4878

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3397 gggaaacaatacttctattg 3416
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>gb|AF123711.1|AF123711 Rickettsia honei strain RB OmpB (ompB) gene, partial cds
          Length = 4887

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3397 gggaaacaatacttctattg 3416
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>gb|AF123708.1|AF123708 Astrakhan rickettsia OmpB (ompB) gene, partial cds
          Length = 4881

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3400 gggaaacaatacttctattg 3419
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>gb|AF123706.1|AF123706 Rickettsia africae OmpB (ompB) gene, partial cds
          Length = 4887

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3397 gggaaacaatacttctattg 3416
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>emb|AJ585045.1| Rickettsia sp. AL2003 partial ompB gene for outer membrane protein
           B
          Length = 811

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 240 gggaaacaatacttctattg 259
           ||||||||||||||||||||
Sbjct: 579 gggaaacaatacttctattg 598
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>gb|AY643093.1| Rickettsia conorii subsp. caspia OmpB (ompB) gene, partial cds
          Length = 4875

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3394 gggaaacaatacttctattg 3413
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>emb|X16353.1|RRP120 R.rickettsii ompB gene for outer membrane protein B
          Length = 5164

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  gggaaacaatacttctattg 259
            ||||||||||||||||||||
Sbjct: 3652 gggaaacaatacttctattg 3671
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>gb|AC156031.2| Mus musculus BAC clone RP24-531B21 from 9, complete sequence
          Length = 169736

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     aagcccttggacctcaaaat 90
              ||||||||||||||||||||
Sbjct: 151283 aagcccttggacctcaaaat 151264
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>dbj|AP006258.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-24F19, complete
             sequence
          Length = 174444

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   tttccagtgagaaaatgaag 468
             ||||||||||||||||||||
Sbjct: 23810 tttccagtgagaaaatgaag 23829
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>dbj|AP005639.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-131J4, complete
            sequence
          Length = 168302

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  tttccagtgagaaaatgaag 468
            ||||||||||||||||||||
Sbjct: 9413 tttccagtgagaaaatgaag 9432
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>emb|CT030236.7| Mouse DNA sequence from clone RP23-445B11 on chromosome 16, complete
              sequence
          Length = 166709

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 449    tttccagtgagaaaatgaag 468
              ||||||||||||||||||||
Sbjct: 101483 tttccagtgagaaaatgaag 101464
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>gb|AC164630.6| Mus musculus 10 BAC RP23-153M4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187031

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   gaaaatgaaggacttaacag 478
             ||||||||||||||||||||
Sbjct: 38213 gaaaatgaaggacttaacag 38232
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>emb|AL669824.13| Mouse DNA sequence from clone RP23-396G1 on chromosome 2, complete
             sequence
          Length = 139077

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    cctgcctgccgcacagaaag 73
             ||||||||||||||||||||
Sbjct: 83592 cctgcctgccgcacagaaag 83611


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,811,953
Number of Sequences: 3902068
Number of extensions: 5811953
Number of successful extensions: 111433
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111297
Number of HSP's gapped (non-prelim): 136
length of query: 589
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 566
effective length of database: 17,143,297,704
effective search space: 9703106500464
effective search space used: 9703106500464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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