ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3f18 |
|---|---|
| Clone Library Name | barley_pub |
>TIM22_YEAST (Q12328) Mitochondrial import inner membrane translocase subunit| TIM22 Length = 207 Score = 47.4 bits (111), Expect = 2e-05 Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 33/149 (22%) Frame = +3 Query: 81 KTVKGAATGLAAGTIWGTIVATW-YDVP------------RVERHVALPGLVRTLKMCG- 218 K+V TG A G + G +A+ YD P ++ + G+ RT++ Sbjct: 45 KSVVSGVTGFALGGVLGLFMASMAYDTPLHTPTPANTAATATAGNIGVGGISRTVQQISD 104 Query: 219 -------------------SYGVTFAAVGGLYIGVEQIVQSQRKKRDFVNGAIGAFVSGA 341 S F +G +Y GVE +++S R K D NG F +GA Sbjct: 105 LPFRQQMKLQFTDMGKKSYSSAKNFGYIGMIYAGVECVIESLRAKNDIYNGVTAGFFTGA 164 Query: 342 TVYGYRGKSIKSALIGGSSLAFTSAILDV 428 + G ++AL+GG+ A SA +D+ Sbjct: 165 GLAYKAGP--QAALMGGAGFAAFSAAIDL 191
>TIM22_CRYNE (Q5KKL8) Mitochondrial import inner membrane translocase subunit| TIM22 Length = 187 Score = 41.2 bits (95), Expect = 0.002 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 14/137 (10%) Frame = +3 Query: 51 GAMEDDSPATKTVKGAATGLAAGTIWGTIVATW-YDVP-----------RVERHVALPGL 194 G + + P T+ G GLA G + + AT+ Y+ P R + + Sbjct: 46 GMVMESCPLKVTIAGVG-GLAIGGFFSLMSATFAYEDPLSRASNKLTTTRAQTMFVFKEM 104 Query: 195 VRTLKMCGSYGVTFAAVGGLYIGVEQIVQSQRKKRDFVNGAIGAFVSGATVYGYRGKSIK 374 R + S G FA VG +Y GVE ++ R K D NG F++GA + G Sbjct: 105 GRNM---WSSGRGFAKVGMVYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAG---P 158 Query: 375 SALIGG--SSLAFTSAI 419 +A++GG + AF+ AI Sbjct: 159 TAMLGGGVAFAAFSGAI 175
>TIM17_CAEEL (O44477) Probable mitochondrial import inner membrane translocase| subunit Tim17 Length = 181 Score = 41.2 bits (95), Expect = 0.002 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Frame = +3 Query: 102 TGLAAGTIWGTIVATWYDVPRVERHVALPGLVRTLKMCGSY-GVTFAAVGGLYIGVEQIV 278 + A G + G+I + + L G++R ++M + GV FAA GG++ ++ + Sbjct: 19 SAFAMGLVGGSIFQAFGGYKNAAKGKKLVGMMREVRMRSTLTGVQFAAWGGMFSTIDCCL 78 Query: 279 QSQRKKRDFVNGAIGAFVSGATVYGYRGKSIK--SALIGGSSLAFTSAI 419 + RKK D +N + ++GA + G + SA++G LA + Sbjct: 79 VAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAILGSVILAMIEGV 127
>TIM22_KLULA (Q6CRJ6) Mitochondrial import inner membrane translocase subunit| TIM22 Length = 196 Score = 40.8 bits (94), Expect = 0.002 Identities = 39/139 (28%), Positives = 54/139 (38%), Gaps = 23/139 (16%) Frame = +3 Query: 81 KTVKGAATGLAAGTIWGTIVATW-YDVP----RVERHVALPGLVRTL------------- 206 K TG A G ++G +A+ YD P LP V+ L Sbjct: 45 KAAISGVTGFALGGVFGLFMASMAYDTPLHTPAPTNAPGLPNKVKELADLPLKQQIKIQF 104 Query: 207 ----KMCGSYGVTFAAVGGLYIGVEQIVQSQRKKRDFVNG-AIGAFVSGATVYGYRGKSI 371 K S F +G +Y GVE +V+S R K D NG A G G Y Sbjct: 105 SDMGKRSYSSAKNFGYIGMIYSGVECVVESLRAKNDIYNGVAAGCLTGGGLAY---KSGP 161 Query: 372 KSALIGGSSLAFTSAILDV 428 ++AL+G + A S +D+ Sbjct: 162 QAALVGCAGFAAFSTAIDL 180
>TIM22_YARLI (Q6BZY4) Mitochondrial import inner membrane translocase subunit| TIM22 Length = 189 Score = 39.7 bits (91), Expect = 0.005 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 15/131 (11%) Frame = +3 Query: 81 KTVKGAATGLAAGTIWGTIVATW-----YDVP---RVERHVALPGLVRTL-------KMC 215 K+V TG G ++G +A+ YD P V+ LP + K Sbjct: 45 KSVMAGVTGFGLGGVFGLFMASVSINMAYDAPVGMGVQTMSDLPFKQQMKIQFTDMGKRA 104 Query: 216 GSYGVTFAAVGGLYIGVEQIVQSQRKKRDFVNGAIGAFVSGATVYGYRGKSIKSALIGGS 395 S F +GG++ G E ++S R K D NG ++G + G ++AL+G + Sbjct: 105 WSSAKNFGFIGGVFSGTECCIESLRAKNDIWNGVAAGCLTGGGLAVKAGP--QAALVGCA 162 Query: 396 SLAFTSAILDV 428 A SA +DV Sbjct: 163 GFAAFSAAIDV 173
>TIM22_DEBHA (Q6BT35) Mitochondrial import inner membrane translocase subunit| TIM22 Length = 182 Score = 37.7 bits (86), Expect = 0.018 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 15/131 (11%) Frame = +3 Query: 81 KTVKGAATGLAAGTIWGTIVATW-YDVPRVERHVALPGLVRTL--------------KMC 215 KTV +G G +G +A+ YDVP V+ +R L K Sbjct: 41 KTVMAGVSGFFLGGFFGLFMASMSYDVPIGTNAVSN---IRDLPFKQQMKLQFSDMGKRT 97 Query: 216 GSYGVTFAAVGGLYIGVEQIVQSQRKKRDFVNGAIGAFVSGATVYGYRGKSIKSALIGGS 395 S F +G +Y GVE ++S R K D NG ++G + G ++AL+G + Sbjct: 98 YSSAKNFGYIGMVYSGVECAIESLRAKHDIYNGVSAGCITGGGLAIRAGP--QAALVGCA 155 Query: 396 SLAFTSAILDV 428 A S +D+ Sbjct: 156 GFAAFSTAIDL 166
>TIM22_ASHGO (Q75E80) Mitochondrial import inner membrane translocase subunit| TIM22 Length = 201 Score = 36.2 bits (82), Expect = 0.052 Identities = 22/65 (33%), Positives = 33/65 (50%) Frame = +3 Query: 234 FAAVGGLYIGVEQIVQSQRKKRDFVNGAIGAFVSGATVYGYRGKSIKSALIGGSSLAFTS 413 F +G +Y GVE ++S R K D NG ++G + G S +ALIG + A S Sbjct: 123 FGYIGMIYSGVECTIESLRAKNDLYNGVAAGCLTGGGLAYKSGPS--AALIGCAGFAAFS 180 Query: 414 AILDV 428 +D+ Sbjct: 181 TAIDL 185
>TIM22_CAEEL (Q9NAQ9) Mitochondrial import inner membrane translocase subunit| tim-22 Length = 213 Score = 35.0 bits (79), Expect = 0.12 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Frame = +3 Query: 219 SYGVTFAAVGGLYIGVEQIVQSQRKKRDFVNGAIGAFVSGATVYGYRG--KSIKSALIGG 392 SYG F ++G ++ G E +++ R K D+ NG SG V G G I A+ G Sbjct: 142 SYGKNFGSIGLMFSGTECALETIRAKSDWRNGT----YSGGIVGGLLGLRAGIMPAVWGA 197 Query: 393 SSLAFTSAILD 425 + A S I+D Sbjct: 198 AGFAVFSTIID 208
>TIM22_NEUCR (Q9C1E8) Mitochondrial import inner membrane translocase subunit| tim-22 Length = 194 Score = 34.7 bits (78), Expect = 0.15 Identities = 21/64 (32%), Positives = 33/64 (51%) Frame = +3 Query: 234 FAAVGGLYIGVEQIVQSQRKKRDFVNGAIGAFVSGATVYGYRGKSIKSALIGGSSLAFTS 413 FA VG L+ G+E ++ R K D NG ++GA + G ++A +G + A S Sbjct: 123 FAKVGALFSGIECGIEGLRAKNDLGNGVAAGCLTGAILAKNGGP--QAAAVGCAGFAAFS 180 Query: 414 AILD 425 A +D Sbjct: 181 AAID 184
>PHOSP_SV5 (P11208) Phosphoprotein (Protein P)| Length = 392 Score = 33.5 bits (75), Expect = 0.34 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +3 Query: 360 GKSIKSALIGGSSLAFTSAILDVGGNTTQSGQWQSVPCIHNGKE 491 GK I + L+G S T +LD+ G T SG ++ V GKE Sbjct: 95 GKPIPNPLLGLDSTPSTQTVLDLSGKTLPSGSYKGVKLAKFGKE 138
>V_SV5 (P11207) Nonstructural protein V| Length = 222 Score = 33.5 bits (75), Expect = 0.34 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +3 Query: 360 GKSIKSALIGGSSLAFTSAILDVGGNTTQSGQWQSVPCIHNGKE 491 GK I + L+G S T +LD+ G T SG ++ V GKE Sbjct: 95 GKPIPNPLLGLDSTPSTQTVLDLSGKTLPSGSYKGVKLAKFGKE 138
>NUJM_NEUCR (P25710) NADH-ubiquinone oxidoreductase 21.3 kDa subunit (EC| 1.6.5.3) (EC 1.6.99.3) Length = 200 Score = 33.1 bits (74), Expect = 0.44 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = +3 Query: 228 VTFAAVGGLYIGVEQIVQSQRKKRDFVNGAIGAFVSGATV 347 ++F GG+Y +Q + R+K D N AIGAF+ G+ + Sbjct: 59 ISFTLAGGIYRFAQQASANLREKEDGWNHAIGAFLGGSVM 98
>TIM17_SCHPO (P87130) Mitochondrial import inner membrane translocase subunit| tim17 (Mitochondrial protein import protein 2) Length = 164 Score = 32.3 bits (72), Expect = 0.75 Identities = 22/81 (27%), Positives = 34/81 (41%) Frame = +3 Query: 105 GLAAGTIWGTIVATWYDVPRVERHVALPGLVRTLKMCGSYGVTFAAVGGLYIGVEQIVQS 284 G G IW +I W + P E+ ++ +T G F GGL+ + V+ Sbjct: 26 GTIGGAIWHSIKG-WRNSPPGEKRISAIAAAKT--RAPVLGGNFGVWGGLFSTFDCAVKG 82 Query: 285 QRKKRDFVNGAIGAFVSGATV 347 R+K D N I F +G + Sbjct: 83 VRRKEDPWNAIIAGFFTGGAL 103
>CLCN6_RABIT (Q9TT16) Chloride channel protein 6 (ClC-6)| Length = 869 Score = 32.3 bits (72), Expect = 0.75 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 33/101 (32%) Frame = +3 Query: 138 VATWYDVPRVERH---VALPGLVRTLKM-CGSYGVTFAAVGGLYIGVE------------ 269 VA +P ++ + V +PG+VR + C +GV F+ GGL++G E Sbjct: 153 VAAGSGIPEIKCYLNGVKVPGIVRLRTLLCKVFGVLFSVAGGLFVGKEGPMIHSGAVVGA 212 Query: 270 -----------------QIVQSQRKKRDFVNGAIGAFVSGA 341 +S R KRDFV+ A ++ A Sbjct: 213 GLPQFQSISLRKIQFNFPYFRSDRDKRDFVSAGAAAGIAAA 253
>CLCN6_MOUSE (O35454) Chloride channel protein 6 (ClC-6)| Length = 870 Score = 32.0 bits (71), Expect = 0.98 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 33/101 (32%) Frame = +3 Query: 138 VATWYDVPRVERH---VALPGLVRTLKM-CGSYGVTFAAVGGLYIGVE------------ 269 VA +P ++ + V +PG+VR + C +GV F+ GGL++G E Sbjct: 153 VAAGSGIPEIKCYLNGVKVPGIVRLRTLLCKVFGVLFSVSGGLFVGKEGPMIHSGAVVGA 212 Query: 270 -----------------QIVQSQRKKRDFVNGAIGAFVSGA 341 +S R KRDFV+ A V+ A Sbjct: 213 GLPQFQSISLRKIQFNFPYFRSDRDKRDFVSAGAAAGVAAA 253
>PCYOX_ARATH (P57681) Probable prenylcysteine oxidase precursor (EC 1.8.3.5)| Length = 500 Score = 32.0 bits (71), Expect = 0.98 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Frame = +3 Query: 51 GAMEDDSPATKTVKGAATG--LAAGTIWGTIVATWYDVPRV---ERHVALPGLVRTLKMC 215 G +EDDSPAT + G+ G A + V+T + ++ ERH + G +RT+ + Sbjct: 28 GGVEDDSPATVCIVGSGIGGSSVAHFLRNYSVSTGLNQAKILMFERHEIVGGRMRTVTVA 87 Query: 216 GSYGVTFAAVGGL 254 G TF A G + Sbjct: 88 GD---TFEAGGSI 97
>CLCN6_HUMAN (P51797) Chloride channel protein 6 (ClC-6)| Length = 869 Score = 31.6 bits (70), Expect = 1.3 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 33/101 (32%) Frame = +3 Query: 138 VATWYDVPRVERH---VALPGLVRTLKM-CGSYGVTFAAVGGLYIGVE------------ 269 VA +P V+ + V +PG+VR + C GV F+ GGL++G E Sbjct: 153 VAAGSGIPEVKCYLNGVKVPGIVRLRTLLCKVLGVLFSVAGGLFVGKEGPMIHSGSVVGA 212 Query: 270 -----------------QIVQSQRKKRDFVNGAIGAFVSGA 341 +S R KRDFV+ A V+ A Sbjct: 213 GLPQFQSISLRKIQFNFPYFRSDRDKRDFVSAGAAAGVAAA 253
>Y336_MYCPN (P75442) Hypothetical protein MG240 homolog (F10_orf291)| Length = 344 Score = 30.8 bits (68), Expect = 2.2 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%) Frame = +3 Query: 132 TIVATWYDVPRVERHVALPGLVRTLKMCGSY-GVTFAAVGGLYIGVEQIVQSQRKKRDFV 308 TI+ T D PR++ + + L +TL + G T G + +Q+ Q+Q +K V Sbjct: 183 TILQTLLDEPRMQHCLRVGQLAKTLAVANKLDGKTAYTAGAYHDLAKQLPQAQLEKLAKV 242 Query: 309 NGAIGAFVSGATVYGYRGKSIKSALIGGSSLAFTSAI 419 G + + S ++ Y G I G ++ A SAI Sbjct: 243 AG-VNDYPSWKVLHSYAGAYILKHWYGLNNSAVFSAI 278
>VIRB8_AGRTU (P09781) Protein virB8| Length = 230 Score = 29.3 bits (64), Expect = 6.4 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = +3 Query: 39 EVGKGAMEDDSPATKTVKGAATGLAAGTIWGTIVATWYDVPRVERHVALPGLVRTLKMCG 218 EV A D +P+T+ ++ T + G + +V+TW R E+ +LPG +R G Sbjct: 152 EVEHIASNDVTPSTQQIRYKRTLVVDGKM--PVVSTWTATVRYEKVTSLPGRLRLTNPAG 209
>VIRB8_AGRT9 (P05357) Protein virB8| Length = 230 Score = 29.3 bits (64), Expect = 6.4 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = +3 Query: 39 EVGKGAMEDDSPATKTVKGAATGLAAGTIWGTIVATWYDVPRVERHVALPGLVRTLKMCG 218 EV A D +P+T+ ++ T + G + +V+TW R E+ +LPG +R G Sbjct: 152 EVEHIASNDVTPSTQQIRYKRTLVVDGKM--PVVSTWTATVRYEKVTSLPGRLRLTNPAG 209
>TYPH_BRAJA (Q89QK7) Putative thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 513 Score = 29.3 bits (64), Expect = 6.4 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = +3 Query: 270 QIVQSQRKKRDFVNGAIGAFVSGATVYGYRGKSIKSALIGGSSLAFTSAILDVGGNTTQS 449 + V+++ + R IGA ++ Y Y I + LIG +S + +L + G Q+ Sbjct: 102 EAVRAKIRGRTLSQAEIGAIINDLAHYRYSDMEIAAFLIGSASFITSDELLALTGAMAQA 161 Query: 450 G 452 G Sbjct: 162 G 162
>MDR21_ARATH (Q9LSJ2) Putative multidrug resistance protein 21 (P-glycoprotein| 22) Length = 1262 Score = 29.3 bits (64), Expect = 6.4 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%) Frame = +3 Query: 90 KGAATGLAAGT------IWGTIVATWYDVPRVERHVALPGLVRTLKMCGSYGVT 233 +G A G+A G+ IWG + TWY V H A G + + +C +YG T Sbjct: 279 QGIAKGIAIGSNGVTYAIWGFM--TWYGSRMVMYHGAKGGTIFAVIICITYGGT 330
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 29.3 bits (64), Expect = 6.4 Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 12/75 (16%) Frame = -1 Query: 265 TPM*SPPTAAKVTP*L--PHILSVRTR----PGSATWRSTRGTSYQVATMVPQ------M 122 TP + T TP L PH S T PG+ T TRGTS AT P + Sbjct: 3464 TPAATTGTTQPSTPALSSPHPSSRTTESPPSPGTTTPGHTRGTSRTTATATPSKTRTSTL 3523 Query: 121 VPAARPVAAPFTVFV 77 +P++ P +AP T V Sbjct: 3524 LPSS-PTSAPITTVV 3537
>SYFB_HAHCH (Q2SDJ7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 790 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = -1 Query: 148 QVATMVPQMVPAARPVAAPFTVFVAGESSSIAPFP 44 Q TM V AA VA PF+ V GE S+ P P Sbjct: 23 QQITMAGLEVDAAERVAKPFSGIVVGEVLSVEPHP 57 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.131 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,226,903 Number of Sequences: 219361 Number of extensions: 959284 Number of successful extensions: 3673 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3543 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3672 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
