Clone Name | basd3f01 |
---|---|
Clone Library Name | barley_pub |
>emb|CT030638.12| Mouse DNA sequence from clone RP23-340M21 on chromosome 14, complete sequence Length = 223278 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 156 gatgattgcactcaggtaaatgg 178 ||||||||||||||||||||||| Sbjct: 43341 gatgattgcactcaggtaaatgg 43319
>gb|AC154614.3| Mus musculus BAC clone RP23-255I2 from chromosome 14, complete sequence Length = 186187 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 156 gatgattgcactcaggtaaatgg 178 ||||||||||||||||||||||| Sbjct: 135995 gatgattgcactcaggtaaatgg 135973
>gb|AC160966.2| Mus musculus BAC clone RP24-362F17 from chromosome 9, complete sequence Length = 129782 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 474 cataagaacttggaagatggtgacag 499 |||||||||||| ||||||||||||| Sbjct: 36843 cataagaacttgaaagatggtgacag 36818
>emb|AL138824.19| Human DNA sequence from clone RP11-14H3 on chromosome 6 Contains the 5' end of an 60S ribosomal protein L7 (RPL7) pseudogene, the 3' end of the CAP2 gene encoding adenylyl cyclase-associated protein 2, a pseudogene similar to SMT3H2, the FAM8A1 gene for family with sequence similarity 8 member A1, the 3'end of the NUP153 gene for nucleoporin 153kD and CpG islands, complete sequence Length = 96202 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 496 acagcaaaacaagccagaagaa 517 |||||||||||||||||||||| Sbjct: 66181 acagcaaaacaagccagaagaa 66160
>gb|AC133282.7| Mus musculus chromosome 15, clone RP24-408B1, complete sequence Length = 183129 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 498 agcaaaacaagccagaagaacc 519 |||||||||||||||||||||| Sbjct: 139905 agcaaaacaagccagaagaacc 139926
>emb|AL138688.27| Human DNA sequence from clone RP11-264J4 on chromosome 13 Contains the 3' end of the ZNF198 gene for zinc finger protein 198, a novel gene, the GJA3 gene for gap junction protein, alpha3, 46kD (connexin 46), a peptidylpropyl isomerase D (cylophilin D) (PPID) pseudogene, the GJB2 gene for gap junction protein beta 2, 26 kD (connexin 26) and 6 CpG islands, complete sequence Length = 127794 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 agcacataagaacttggaaga 490 ||||||||||||||||||||| Sbjct: 105929 agcacataagaacttggaaga 105909
>emb|AL139022.4|CNS01DX4 Human chromosome 14 DNA sequence BAC R-840I19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 190517 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 496 acagcaaaacaagccagaaga 516 ||||||||||||||||||||| Sbjct: 25230 acagcaaaacaagccagaaga 25210
>emb|AL831741.16| Mouse DNA sequence from clone RP23-337N2 on chromosome 4, complete sequence Length = 213347 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 259 cacactccgggtctgttgatg 279 ||||||||||||||||||||| Sbjct: 38308 cacactccgggtctgttgatg 38328
>gb|AC158614.5| Mus musculus 10 BAC RP23-76C5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 223468 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 ggtacttctaaggtgtgctgtggt 425 ||||||||| |||||||||||||| Sbjct: 56421 ggtacttctgaggtgtgctgtggt 56398
>emb|BX571677.10| Zebrafish DNA sequence from clone CH211-276C22 in linkage group 6, complete sequence Length = 82018 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 agaacattgacaggagcaca 475 |||||||||||||||||||| Sbjct: 48801 agaacattgacaggagcaca 48782
>gb|AC119419.9| Medicago truncatula clone mth2-6b12, complete sequence Length = 106395 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 tcttctcagcttgcttcaca 262 |||||||||||||||||||| Sbjct: 89752 tcttctcagcttgcttcaca 89733
>gb|AC148487.14| Medicago truncatula clone mth2-57f20, complete sequence Length = 119671 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 gaacccaatcttccaacttt 534 |||||||||||||||||||| Sbjct: 5261 gaacccaatcttccaacttt 5242
>emb|AL160007.10| Human DNA sequence from clone RP4-798P15 on chromosome 1q24.1-25.2 Contains the 3' end of a gene for regucalcin gene promotor region related protein (RGPR), DKFZp686C2486, complete sequence Length = 112732 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 ccttccttaccattggcagagttt 374 |||||| ||||||||||||||||| Sbjct: 83188 ccttccataccattggcagagttt 83211
>gb|AC145202.24| Medicago truncatula clone mth2-15e9, complete sequence Length = 89293 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 gaacccaatcttccaacttt 534 |||||||||||||||||||| Sbjct: 22356 gaacccaatcttccaacttt 22375
>emb|BX546459.13| Zebrafish DNA sequence from clone RP71-15I6 in linkage group 2, complete sequence Length = 151492 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 agaacattgacaggagcaca 475 |||||||||||||||||||| Sbjct: 106938 agaacattgacaggagcaca 106957
>gb|AC024897.23| Homo sapiens 3 BAC RP11-505J9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 204794 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 ttggaagatggtgacagcaa 502 |||||||||||||||||||| Sbjct: 189506 ttggaagatggtgacagcaa 189487
>gb|AC155883.2| Medicago truncatula chromosome 2 BAC clone mte1-80o18, complete sequence Length = 97452 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 tcttctcagcttgcttcaca 262 |||||||||||||||||||| Sbjct: 4340 tcttctcagcttgcttcaca 4321
>emb|AL773596.12| Zebrafish DNA sequence from clone CH211-208G24 in linkage group 17, complete sequence Length = 206778 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 tgctagcactgtactgttgg 123 |||||||||||||||||||| Sbjct: 40962 tgctagcactgtactgttgg 40981
>gb|AC122785.17| Mus musculus chromosome 3, clone RP24-247G11, complete sequence Length = 134667 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gtaaatggacagaatattga 79 |||||||||||||||||||| Sbjct: 52879 gtaaatggacagaatattga 52898
>ref|NM_001012373.1| Danio rerio death effector domain-associated factor (Dedaf), mRNA Length = 774 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 agaacattgacaggagcaca 475 |||||||||||||||||||| Sbjct: 536 agaacattgacaggagcaca 555
>gb|AY885249.1| Danio rerio death effector domain-associated factor (Dedaf) mRNA, complete cds Length = 774 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 agaacattgacaggagcaca 475 |||||||||||||||||||| Sbjct: 536 agaacattgacaggagcaca 555 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,090,463 Number of Sequences: 3902068 Number of extensions: 5090463 Number of successful extensions: 87250 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87208 Number of HSP's gapped (non-prelim): 42 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)