ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3h12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467797.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2063 Score = 167 bits (84), Expect = 5e-38 Identities = 213/256 (83%) Strand = Plus / Plus Query: 308 atcagggctattctgattcaagcacactgataagttctattggtagagataattcaatca 367 ||||||| | ||| |||||||| || || ||||||||||| ||| ||||||| ||||||| Sbjct: 627 atcagggtttttcggattcaagtaccctaataagttctatcggtcgagataactcaatca 686 Query: 368 attgcctggcccgttgctctcggtctgattatggctccatagcatcactgagccggaact 427 |||||| |||||||||||||| || |||||||||||||| |||||| | | ||||||| Sbjct: 687 gttgcctcgcccgttgctctcgttcagattatggctccattgcatcagtcaatcggaact 746 Query: 428 tccgttcccttgtccgtgatggtggtttgtacagagaacggcggaggttagggattgcag 487 ||| || |||||||| ||| | | |||| |||||||| ||| |||||||||| Sbjct: 747 tccactcacttgtccgcagtggggagctttacaaggaacggcgtcagttggggattgcag 806 Query: 488 aacactgggtatatttctcctgcaatgtgcaggagtgggaggcatatgacccataccgtg 547 |||| ||||| |||||||||||||| |||||||||||||| || |||||||| |||||| Sbjct: 807 aacattgggtctatttctcctgcaacgtgcaggagtgggaagcttatgacccttaccgtt 866 Query: 548 gacggtggatgacact 563 ||||||||||||||| Sbjct: 867 cacggtggatgacact 882 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Plus Query: 77 gaatgttggagggtcaatcttgcctgatctcgaggtcactgcccagctcctgcgaacagg 136 ||||||||||||||||||||||| ||||||| ||||| |||| |||||||| || || | Sbjct: 393 gaatgttggagggtcaatcttgcttgatctcaaggtctttgccaagctcctgtgatcaag 452 Query: 137 aatccagattagcttatatgacttaccacctcctcgagatcacgaggactaagcgc 192 ||||||||||||| || ||||| ||||||||||| ||||| ||||||| ||||||| Sbjct: 453 aatccagattagcatacatgacctaccacctccttgagataacgaggagtaagcgc 508
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 167 bits (84), Expect = 5e-38 Identities = 213/256 (83%) Strand = Plus / Minus Query: 308 atcagggctattctgattcaagcacactgataagttctattggtagagataattcaatca 367 ||||||| | ||| |||||||| || || ||||||||||| ||| ||||||| ||||||| Sbjct: 31464607 atcagggtttttcggattcaagtaccctaataagttctatcggtcgagataactcaatca 31464548 Query: 368 attgcctggcccgttgctctcggtctgattatggctccatagcatcactgagccggaact 427 |||||| |||||||||||||| || |||||||||||||| |||||| | | ||||||| Sbjct: 31464547 gttgcctcgcccgttgctctcgttcagattatggctccattgcatcagtcaatcggaact 31464488 Query: 428 tccgttcccttgtccgtgatggtggtttgtacagagaacggcggaggttagggattgcag 487 ||| || |||||||| ||| | | |||| |||||||| ||| |||||||||| Sbjct: 31464487 tccactcacttgtccgcagtggggagctttacaaggaacggcgtcagttggggattgcag 31464428 Query: 488 aacactgggtatatttctcctgcaatgtgcaggagtgggaggcatatgacccataccgtg 547 |||| ||||| |||||||||||||| |||||||||||||| || |||||||| |||||| Sbjct: 31464427 aacattgggtctatttctcctgcaacgtgcaggagtgggaagcttatgacccttaccgtt 31464368 Query: 548 gacggtggatgacact 563 ||||||||||||||| Sbjct: 31464367 cacggtggatgacact 31464352 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Minus Query: 77 gaatgttggagggtcaatcttgcctgatctcgaggtcactgcccagctcctgcgaacagg 136 ||||||||||||||||||||||| ||||||| ||||| |||| |||||||| || || | Sbjct: 31464841 gaatgttggagggtcaatcttgcttgatctcaaggtctttgccaagctcctgtgatcaag 31464782 Query: 137 aatccagattagcttatatgacttaccacctcctcgagatcacgaggactaagcgc 192 ||||||||||||| || ||||| ||||||||||| ||||| ||||||| ||||||| Sbjct: 31464781 aatccagattagcatacatgacctaccacctccttgagataacgaggagtaagcgc 31464726
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11 Length = 155168 Score = 167 bits (84), Expect = 5e-38 Identities = 213/256 (83%) Strand = Plus / Minus Query: 308 atcagggctattctgattcaagcacactgataagttctattggtagagataattcaatca 367 ||||||| | ||| |||||||| || || ||||||||||| ||| ||||||| ||||||| Sbjct: 100004 atcagggtttttcggattcaagtaccctaataagttctatcggtcgagataactcaatca 99945 Query: 368 attgcctggcccgttgctctcggtctgattatggctccatagcatcactgagccggaact 427 |||||| |||||||||||||| || |||||||||||||| |||||| | | ||||||| Sbjct: 99944 gttgcctcgcccgttgctctcgttcagattatggctccattgcatcagtcaatcggaact 99885 Query: 428 tccgttcccttgtccgtgatggtggtttgtacagagaacggcggaggttagggattgcag 487 ||| || |||||||| ||| | | |||| |||||||| ||| |||||||||| Sbjct: 99884 tccactcacttgtccgcagtggggagctttacaaggaacggcgtcagttggggattgcag 99825 Query: 488 aacactgggtatatttctcctgcaatgtgcaggagtgggaggcatatgacccataccgtg 547 |||| ||||| |||||||||||||| |||||||||||||| || |||||||| |||||| Sbjct: 99824 aacattgggtctatttctcctgcaacgtgcaggagtgggaagcttatgacccttaccgtt 99765 Query: 548 gacggtggatgacact 563 ||||||||||||||| Sbjct: 99764 cacggtggatgacact 99749 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Minus Query: 77 gaatgttggagggtcaatcttgcctgatctcgaggtcactgcccagctcctgcgaacagg 136 ||||||||||||||||||||||| ||||||| ||||| |||| |||||||| || || | Sbjct: 100238 gaatgttggagggtcaatcttgcttgatctcaaggtctttgccaagctcctgtgatcaag 100179 Query: 137 aatccagattagcttatatgacttaccacctcctcgagatcacgaggactaagcgc 192 ||||||||||||| || ||||| ||||||||||| ||||| ||||||| ||||||| Sbjct: 100178 aatccagattagcatacatgacctaccacctccttgagataacgaggagtaagcgc 100123
>dbj|AK066613.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073O20, full insert sequence Length = 2062 Score = 167 bits (84), Expect = 5e-38 Identities = 213/256 (83%) Strand = Plus / Plus Query: 308 atcagggctattctgattcaagcacactgataagttctattggtagagataattcaatca 367 ||||||| | ||| |||||||| || || ||||||||||| ||| ||||||| ||||||| Sbjct: 626 atcagggtttttcggattcaagtaccctaataagttctatcggtcgagataactcaatca 685 Query: 368 attgcctggcccgttgctctcggtctgattatggctccatagcatcactgagccggaact 427 |||||| |||||||||||||| || |||||||||||||| |||||| | | ||||||| Sbjct: 686 gttgcctcgcccgttgctctcgttcagattatggctccattgcatcagtcaatcggaact 745 Query: 428 tccgttcccttgtccgtgatggtggtttgtacagagaacggcggaggttagggattgcag 487 ||| || |||||||| ||| | | |||| |||||||| ||| |||||||||| Sbjct: 746 tccactcacttgtccgcagtggggagctttacaaggaacggcgtcagttggggattgcag 805 Query: 488 aacactgggtatatttctcctgcaatgtgcaggagtgggaggcatatgacccataccgtg 547 |||| ||||| |||||||||||||| |||||||||||||| || |||||||| |||||| Sbjct: 806 aacattgggtctatttctcctgcaacgtgcaggagtgggaagcttatgacccttaccgtt 865 Query: 548 gacggtggatgacact 563 ||||||||||||||| Sbjct: 866 cacggtggatgacact 881 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Plus Query: 77 gaatgttggagggtcaatcttgcctgatctcgaggtcactgcccagctcctgcgaacagg 136 ||||||||||||||||||||||| ||||||| ||||| |||| |||||||| || || | Sbjct: 392 gaatgttggagggtcaatcttgcttgatctcaaggtctttgccaagctcctgtgatcaag 451 Query: 137 aatccagattagcttatatgacttaccacctcctcgagatcacgaggactaagcgc 192 ||||||||||||| || ||||| ||||||||||| ||||| ||||||| ||||||| Sbjct: 452 aatccagattagcatacatgacctaccacctccttgagataacgaggagtaagcgc 507
>gb|L29074.1|HUMFMR1S Homo sapiens fragile X mental retardation syndrome protein (FMR1) gene, alternative splice products, complete cds; and pseudogene, complete sequence Length = 185775 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 cagaacactgggtatatttct 505 ||||||||||||||||||||| Sbjct: 121870 cagaacactgggtatatttct 121850
>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence Length = 186961 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 tgagcatgatggaattgctgt 233 ||||||||||||||||||||| Sbjct: 180736 tgagcatgatggaattgctgt 180716
>gb|AC152942.2| Ornithorhynchus anatinus chromosome UNK clone OABb-193A1, complete sequence Length = 139887 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 46 ccctgttgcaatattgttgcagatt 70 ||||||||||||||| ||||||||| Sbjct: 30911 ccctgttgcaatatttttgcagatt 30887
>ref|XM_512899.1| PREDICTED: Pan troglodytes similar to immunoglobulin-like transcript 7 (LOC456290), mRNA Length = 1998 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gatgtgtgcagagggcctgg 26 |||||||||||||||||||| Sbjct: 80 gatgtgtgcagagggcctgg 99
>gb|AC132870.10| Mus musculus chromosome 15, clone RP24-206L11, complete sequence Length = 138560 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ctccctgttgcaatattgtt 63 |||||||||||||||||||| Sbjct: 78875 ctccctgttgcaatattgtt 78856
>ref|NR_003061.1| Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2) on chromosome 19 Length = 5287 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gatgtgtgcagagggcctgg 26 |||||||||||||||||||| Sbjct: 163 gatgtgtgcagagggcctgg 182
>emb|BX842590.1| Rhesus DNA sequence from clone bRH-178N19, complete sequence Length = 114431 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gatgtgtgcagagggcctgg 26 |||||||||||||||||||| Sbjct: 104938 gatgtgtgcagagggcctgg 104957
>emb|BX842589.1| Chimp DNA sequence from clone bCH-61P22, complete sequence Length = 201637 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gatgtgtgcagagggcctgg 26 |||||||||||||||||||| Sbjct: 11017 gatgtgtgcagagggcctgg 11036
>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence Length = 255062 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 aggtcactgcccagctcctg 128 |||||||||||||||||||| Sbjct: 165076 aggtcactgcccagctcctg 165057
>emb|AL139117.11| Human DNA sequence from clone RP1-52N12 on chromosome 19, complete sequence Length = 148497 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gatgtgtgcagagggcctgg 26 |||||||||||||||||||| Sbjct: 128829 gatgtgtgcagagggcctgg 128848
>gb|AC036111.7| Homo sapiens chromosome 2, clone RP11-738O11, complete sequence Length = 184570 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 tattctgattcaagcacact 335 |||||||||||||||||||| Sbjct: 1895 tattctgattcaagcacact 1876
>gb|AC155174.2| Pan troglodytes BAC clone CH251-396C20 from chromosome unknown, complete sequence Length = 185465 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 gatgtgtgcagagggcctgg 26 |||||||||||||||||||| Sbjct: 183510 gatgtgtgcagagggcctgg 183491
>gb|AC160648.3| Pan troglodytes BAC clone CH251-568C23 from chromosome unknown, complete sequence Length = 205923 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gatgtgtgcagagggcctgg 26 |||||||||||||||||||| Sbjct: 145811 gatgtgtgcagagggcctgg 145830
>ref|XR_001531.1| PREDICTED: Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), misc RNA Length = 1683 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gatgtgtgcagagggcctgg 26 |||||||||||||||||||| Sbjct: 163 gatgtgtgcagagggcctgg 182
>ref|XR_001520.1| PREDICTED: Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), misc RNA Length = 1683 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gatgtgtgcagagggcctgg 26 |||||||||||||||||||| Sbjct: 163 gatgtgtgcagagggcctgg 182
>gb|AC005399.21| Homo sapiens chromosome 22 clone p238m15 map 22q11, complete sequence Length = 151834 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 gcagagggcctggagtcttg 33 |||||||||||||||||||| Sbjct: 65383 gcagagggcctggagtcttg 65402
>dbj|AK028624.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732419F13 product:unclassifiable, full insert sequence Length = 2854 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 aggtcactgcccagctcctg 128 |||||||||||||||||||| Sbjct: 1194 aggtcactgcccagctcctg 1175
>ref|XM_624389.1| PREDICTED: Apis mellifera similar to ENSANGP00000022131 (LOC552009), mRNA Length = 1018 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 tattctgattcaagcacact 335 |||||||||||||||||||| Sbjct: 751 tattctgattcaagcacact 732
>gb|AC006293.1|AC006293 Homo sapiens chromosome 19, cosmid F15658, complete sequence Length = 43527 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gatgtgtgcagagggcctgg 26 |||||||||||||||||||| Sbjct: 1830 gatgtgtgcagagggcctgg 1849
>gb|AF072100.1|HSILTX1 Homo sapiens immunoglobulin-like transcript 10 protein gene, exons 1 through 6 Length = 2626 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gatgtgtgcagagggcctgg 26 |||||||||||||||||||| Sbjct: 163 gatgtgtgcagagggcctgg 182
>dbj|AP003033.2| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2517D11, complete sequence Length = 62192 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 tattctgattcaagcacact 335 |||||||||||||||||||| Sbjct: 101 tattctgattcaagcacact 120
>emb|AL683809.7| Mouse DNA sequence from clone RP23-440B21 on chromosome X, complete sequence Length = 213187 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 agaacactgggtatatttct 505 |||||||||||||||||||| Sbjct: 86371 agaacactgggtatatttct 86390 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,033,466 Number of Sequences: 3902068 Number of extensions: 4033466 Number of successful extensions: 65018 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64945 Number of HSP's gapped (non-prelim): 73 length of query: 563 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 540 effective length of database: 17,143,297,704 effective search space: 9257380760160 effective search space used: 9257380760160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
