Clone Name | baak0c02 |
---|---|
Clone Library Name | barley_pub |
>RPB6_RAT (O88828) DNA-directed RNA polymerases I, II, and III 14.4 kDa| polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4) Length = 127 Score = 134 bits (338), Expect = 2e-31 Identities = 66/77 (85%), Positives = 70/77 (90%) Frame = +1 Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414 R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ARKIP IRRYL Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110 Query: 415 PDGSYEDWGVDELIVED 465 PDGSYEDWGVDELI+ D Sbjct: 111 PDGSYEDWGVDELIISD 127
>RPB6_MOUSE (P61219) DNA-directed RNA polymerases I, II, and III 14.4 kDa| polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4) Length = 127 Score = 134 bits (338), Expect = 2e-31 Identities = 66/77 (85%), Positives = 70/77 (90%) Frame = +1 Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414 R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ARKIP IRRYL Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110 Query: 415 PDGSYEDWGVDELIVED 465 PDGSYEDWGVDELI+ D Sbjct: 111 PDGSYEDWGVDELIISD 127
>RPB6_PONPY (Q5R592) DNA-directed RNA polymerases I, II, and III 14.4 kDa| polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4) Length = 127 Score = 134 bits (337), Expect = 2e-31 Identities = 66/77 (85%), Positives = 70/77 (90%) Frame = +1 Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414 R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ARKIP IRRYL Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110 Query: 415 PDGSYEDWGVDELIVED 465 PDGSYEDWGVDELI+ D Sbjct: 111 PDGSYEDWGVDELIITD 127
>RPB6_HUMAN (P61218) DNA-directed RNA polymerases I, II, and III 14.4 kDa| polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4) (RPABC2) Length = 127 Score = 134 bits (337), Expect = 2e-31 Identities = 66/77 (85%), Positives = 70/77 (90%) Frame = +1 Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414 R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ARKIP IRRYL Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110 Query: 415 PDGSYEDWGVDELIVED 465 PDGSYEDWGVDELI+ D Sbjct: 111 PDGSYEDWGVDELIITD 127
>RPB6_CRIGR (P61217) DNA-directed RNA polymerases I, II, and III 14.4 kDa| polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4) Length = 127 Score = 134 bits (337), Expect = 2e-31 Identities = 66/77 (85%), Positives = 70/77 (90%) Frame = +1 Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414 R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ARKIP IRRYL Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110 Query: 415 PDGSYEDWGVDELIVED 465 PDGSYEDWGVDELI+ D Sbjct: 111 PDGSYEDWGVDELIITD 127
>RPB6_YEAST (P20435) DNA-directed RNA polymerases I, II, and III 23 kDa| polypeptide (EC 2.7.7.6) (ABC23) Length = 155 Score = 127 bits (320), Expect = 2e-29 Identities = 62/76 (81%), Positives = 67/76 (88%) Frame = +1 Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414 R TT YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL +KIP IRRYL Sbjct: 79 RATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYL 138 Query: 415 PDGSYEDWGVDELIVE 462 PDGS+EDW V+ELIV+ Sbjct: 139 PDGSFEDWSVEELIVD 154
>RPB6_DROME (Q24320) DNA-directed RNA polymerases I, II, and III 14.4 kDa| polypeptide (EC 2.7.7.6) (RPB6) Length = 131 Score = 127 bits (319), Expect = 2e-29 Identities = 60/78 (76%), Positives = 70/78 (89%) Frame = +1 Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414 R TTKYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+ +KIP IRRYL Sbjct: 54 RITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYL 113 Query: 415 PDGSYEDWGVDELIVEDS 468 PD SYEDW +DELI+ D+ Sbjct: 114 PDHSYEDWSIDELIMVDN 131
>RPB6_SCHPO (P36595) DNA-directed RNA polymerases I, II, and III 15 kDa| polypeptide (EC 2.7.7.6) (RPABC6) Length = 142 Score = 127 bits (318), Expect = 3e-29 Identities = 61/74 (82%), Positives = 66/74 (89%) Frame = +1 Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414 R TT YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IAMKEL +KIP +RRYL Sbjct: 69 RTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYL 128 Query: 415 PDGSYEDWGVDELI 456 PDGSYEDW V ELI Sbjct: 129 PDGSYEDWSVAELI 142
>RPB6_CAEEL (Q17684) Probable DNA-directed RNA polymerases I, II, and III 14.4| kDa polypeptide (EC 2.7.7.6) (RPB6) Length = 137 Score = 121 bits (303), Expect = 2e-27 Identities = 57/75 (76%), Positives = 65/75 (86%) Frame = +1 Query: 241 TTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPD 420 TT +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL+ R+IP +RRYLPD Sbjct: 62 TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPD 121 Query: 421 GSYEDWGVDELIVED 465 GSYEDW D+L + D Sbjct: 122 GSYEDWPTDQLQLAD 136
>RPOK_METMA (Q8PW42) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 83 Score = 65.5 bits (158), Expect = 1e-10 Identities = 30/51 (58%), Positives = 42/51 (82%) Frame = +1 Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408 T++ERARI+G RALQI+M APV+VE +G DPL +A++EL+A IP T++R Sbjct: 30 TRFERARIVGARALQIAMGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 80
>RPOK_METAC (Q8TT40) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 60 Score = 63.9 bits (154), Expect = 3e-10 Identities = 29/51 (56%), Positives = 41/51 (80%) Frame = +1 Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408 T++ERARI+G RALQI+M APV+V+ +G DPL +A+ EL+A IP T++R Sbjct: 7 TRFERARIVGARALQIAMGAPVLVDDDGRLDPLGVAIAELKAEIIPITVKR 57
>RPOK_AERPE (Q9YDJ9) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 89 Score = 62.0 bits (149), Expect = 1e-09 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Frame = +1 Query: 250 YMTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRARKIPFTIRRYLPDG 423 Y+TKYERARI+G RA Q+S+ AP +V+ E G +PL+IA E+ +P +I RYLP G Sbjct: 7 YLTKYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGG 66 Query: 424 SYEDWGVDELI 456 + + L+ Sbjct: 67 GGQSLSLSRLV 77
>RPO6_MIMIV (Q5UQ32) DNA-directed RNA polymerase subunit 6 (EC 2.7.7.6)| Length = 396 Score = 60.8 bits (146), Expect = 3e-09 Identities = 31/73 (42%), Positives = 42/73 (57%) Frame = +1 Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414 R T +T YE RILGTRA Q + A +++ P ++A EL A+ F +RR+L Sbjct: 187 RETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEGMHPAKMAFVELTAKMTSFIVRRHL 246 Query: 415 PDGSYEDWGVDEL 453 P YEDW +DEL Sbjct: 247 PGKKYEDWRIDEL 259
>RPOK_ARCFU (O29134) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 75 Score = 60.1 bits (144), Expect = 5e-09 Identities = 28/51 (54%), Positives = 41/51 (80%) Frame = +1 Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408 T++E+ARI+G RALQI+M APV++E + +T+PLEIA++E IP T+RR Sbjct: 12 TRFEKARIIGARALQIAMGAPVLIETD-KTEPLEIALEEFNRGVIPITVRR 61
>RPOK_METTH (O26148) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 61 Score = 59.7 bits (143), Expect = 6e-09 Identities = 27/55 (49%), Positives = 41/55 (74%) Frame = +1 Query: 244 TKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408 +K +T++ERAR++G RALQISM A +VE++ DP++IA KEL + +P +RR Sbjct: 5 SKKLTRFERARLIGARALQISMGARPLVEIKESLDPVDIARKELEKKVMPLDVRR 59
>RPOK_PYRAE (Q8ZTF9) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 106 Score = 58.9 bits (141), Expect = 1e-08 Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%) Frame = +1 Query: 253 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRARKIPFTIRRYLPDG 423 +TKYE ARI+G RALQ++M A +V+++ G DP+ IAM+ELR + F I R +PDG Sbjct: 31 LTKYETARIIGARALQLAMGAQPLVDIQEVGSVDPVLIAMEELRRGLLDFIIVREMPDG 89
>RPOK_PICTO (Q6L1M4) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 60 Score = 57.0 bits (136), Expect = 4e-08 Identities = 27/53 (50%), Positives = 40/53 (75%), Gaps = 1/53 (1%) Frame = +1 Query: 253 MTKYERARILGTRALQISMNAPVMVELEGE-TDPLEIAMKELRARKIPFTIRR 408 +TK+E+ARI+G RALQI+M APV++++ + DP++IAM E IP TI+R Sbjct: 6 LTKFEKARIIGARALQIAMGAPVIIDISPDIIDPIDIAMIEFENNVIPITIKR 58
>RPOK_HALSA (Q9HQJ0) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 60 Score = 56.2 bits (134), Expect = 7e-08 Identities = 25/55 (45%), Positives = 43/55 (78%) Frame = +1 Query: 244 TKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408 +++ ++YE+ARI+G RALQ++ APV+V+ + +T+P+ IA +E A +PFT+RR Sbjct: 4 SQHFSRYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57
>RPOK_SULSO (Q97ZJ9) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 95 Score = 55.5 bits (132), Expect = 1e-07 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%) Frame = +1 Query: 253 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRARKIPFTIRRYLPDG 423 +T+YE AR++ RALQ++M AP ++++ TD + IA +E R +P TIRR LP+G Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNG 85
>RPOK_THEAC (Q9HJ14) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 61 Score = 53.9 bits (128), Expect = 3e-07 Identities = 26/52 (50%), Positives = 39/52 (75%), Gaps = 1/52 (1%) Frame = +1 Query: 256 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRARKIPFTIRR 408 TK+E+ARI+G RALQI+M APV++++ + DP++IAM E IP TI++ Sbjct: 4 TKFEKARIIGARALQIAMGAPVIIDVPKNIIDPVDIAMLEFENNVIPITIKK 55
>RPOK_THEVO (P58232) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 61 Score = 53.1 bits (126), Expect = 6e-07 Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 1/52 (1%) Frame = +1 Query: 256 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRARKIPFTIRR 408 TK+E+ARI+G RALQI+M APV++++ + DP++IA E IP TI+R Sbjct: 4 TKFEKARIIGARALQIAMGAPVIIDIPKNVIDPVDIATIEFENNVIPITIKR 55
>RPOK_PYRFU (Q8U0E8) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 57 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/51 (49%), Positives = 35/51 (68%) Frame = +1 Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408 T++E+ARI+G RALQISM APV++++ PLE A+ E IP T+ R Sbjct: 5 TRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIR 55
>RPOK_PYRHO (P62015) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 57 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/51 (47%), Positives = 35/51 (68%) Frame = +1 Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408 T++E+ARI+G RALQI+M APV++++ PLE A+ E IP T+ R Sbjct: 5 TRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>RPOK_PYRAB (P62014) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 57 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/51 (47%), Positives = 35/51 (68%) Frame = +1 Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408 T++E+ARI+G RALQI+M APV++++ PLE A+ E IP T+ R Sbjct: 5 TRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>RPOK_SULAC (P39463) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 89 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Frame = +1 Query: 238 NTTKYMTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRARKIPFTIRRY 411 N +TKYE ARI+ RALQ+SM A +++ D + IA +EL+ +P TIRR Sbjct: 13 NWKNKLTKYEIARIISARALQLSMGALPLIDTSNLKSDDVISIAEEELKRGVLPITIRRI 72 Query: 412 LPDGSYE 432 P+G E Sbjct: 73 YPNGQVE 79
>RPOK_PYRKO (Q5JJD0) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 57 Score = 50.4 bits (119), Expect = 4e-06 Identities = 23/51 (45%), Positives = 35/51 (68%) Frame = +1 Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408 T++E+ARI+G RALQI+M APV++++ PL+ A+ E IP T+ R Sbjct: 5 TRFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIR 55
>RPOK_HALMA (P29200) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 57 Score = 50.1 bits (118), Expect = 5e-06 Identities = 25/51 (49%), Positives = 36/51 (70%) Frame = +1 Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408 ++YE+AR LG RALQ++ APV++E E T P+ IA +E A +PFT+ R Sbjct: 6 SRYEKARKLGARALQLAHGAPVLIETE-HTQPILIAAEEYDAGVLPFTVNR 55
>RPOK_SULTO (Q972B1) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 86 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%) Frame = +1 Query: 253 MTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRARKIPFTIRRYLPDGS 426 +TKYE ARI+ RALQ++M A +++ D + IA +EL+ +P T+RR P+G Sbjct: 15 LTKYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRGVLPITVRRVYPNGK 74 Query: 427 YE 432 E Sbjct: 75 IE 76
>RPOK_METJA (Q57650) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 57 Score = 40.0 bits (92), Expect = 0.005 Identities = 21/47 (44%), Positives = 33/47 (70%) Frame = +1 Query: 253 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIP 393 +TK+E ARILG R+LQIS A +E + ++ L+IA +E++ K+P Sbjct: 3 LTKFEIARILGARSLQISSGAYATIETKCDSS-LKIAYEEIKQGKVP 48
>RPOZ_BRUME (Q8YG64) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 133 Score = 30.8 bits (68), Expect = 3.2 Identities = 14/43 (32%), Positives = 27/43 (62%) Frame = +1 Query: 247 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKEL 375 K ++E + G RA QIS AP+ V+ + + +P+ +A++E+ Sbjct: 12 KVENRFELVLLAGHRARQISQGAPITVDRDNDKNPV-VALREI 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,242,685 Number of Sequences: 219361 Number of extensions: 1188668 Number of successful extensions: 3426 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3344 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3414 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)