ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak0a09 |
|---|---|
| Clone Library Name | barley_pub |
>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)| (Fertility restorer) (Restorer for CMS) Length = 791 Score = 56.6 bits (135), Expect = 1e-08 Identities = 30/82 (36%), Positives = 46/82 (56%) Frame = +3 Query: 39 QPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEK 218 +P+V TY+ LI + A + D + M + PNTVT + +++GYC+ R++D Sbjct: 508 KPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALV 567 Query: 219 LLSAMLESANSKPDVWTMNIIL 284 L M ES+ PD+ T NIIL Sbjct: 568 LFKEM-ESSGVSPDIITYNIIL 588 Score = 48.1 bits (113), Expect = 5e-06 Identities = 27/89 (30%), Positives = 44/89 (49%) Frame = +3 Query: 42 PDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKL 221 PDV TY+ +I A A D + M + V P+ +T N +L GYC +G+ + Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288 Query: 222 LSAMLESANSKPDVWTMNIILSLFGNSGQ 308 L M S +PDV T ++++ +G+ Sbjct: 289 LKKM-RSDGVEPDVVTYSLLMDYLCKNGR 316 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/69 (31%), Positives = 42/69 (60%) Frame = +3 Query: 108 DAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNIILS 287 + +++ M V PN +T N +++GYC AG++D+ KLLS M+ S KP+ T + +++ Sbjct: 496 EKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV-SVGLKPNTVTYSTLIN 554 Query: 288 LFGNSGQVE 314 + ++E Sbjct: 555 GYCKISRME 563 Score = 47.0 bits (110), Expect = 1e-05 Identities = 26/92 (28%), Positives = 44/92 (47%) Frame = +3 Query: 39 QPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEK 218 +PDV TYS+L+ R ++ M +R + P T +L GY G L +M Sbjct: 298 EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 357 Query: 219 LLSAMLESANSKPDVWTMNIILSLFGNSGQVE 314 LL M+ + PD + +I++ + G+V+ Sbjct: 358 LLDLMVRN-GIHPDHYVFSILICAYAKQGKVD 388 Score = 45.4 bits (106), Expect = 3e-05 Identities = 23/91 (25%), Positives = 48/91 (52%) Frame = +3 Query: 42 PDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKL 221 P Y+ LI +++ + + EM +R + NT+ N ++ +C+ GR+ + EKL Sbjct: 439 PGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL 498 Query: 222 LSAMLESANSKPDVWTMNIILSLFGNSGQVE 314 M+ KP+V T N +++ + +G+++ Sbjct: 499 FELMVR-IGVKPNVITYNTLINGYCLAGKMD 528 Score = 45.4 bits (106), Expect = 3e-05 Identities = 23/83 (27%), Positives = 43/83 (51%) Frame = +3 Query: 42 PDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKL 221 PD Y +SILI A+ + D ++ +M ++ + PN VT V+ C++GR++D Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428 Query: 222 LSAMLESANSKPDVWTMNIILSL 290 M++ S ++ ++I L Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGL 451 Score = 45.1 bits (105), Expect = 4e-05 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 38/129 (29%) Frame = +3 Query: 36 CQPDVYTYSILIKAFVDAPR--------------------------------------FD 101 C P+V++Y+IL+K D R D Sbjct: 154 CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSD 213 Query: 102 LVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNII 281 + Y EM +R + P+ VT N +++ C+A +D ++L+ M+++ PD T N I Sbjct: 214 KAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSI 272 Query: 282 LSLFGNSGQ 308 L + +SGQ Sbjct: 273 LHGYCSSGQ 281 Score = 44.7 bits (104), Expect = 6e-05 Identities = 26/82 (31%), Positives = 44/82 (53%) Frame = +3 Query: 39 QPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEK 218 +P+ TYS LI + R + ++KEM V+P+ +T NI+L G + R ++ Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602 Query: 219 LLSAMLESANSKPDVWTMNIIL 284 L + ES ++ ++ T NIIL Sbjct: 603 LYVRITES-GTQIELSTYNIIL 623 Score = 39.7 bits (91), Expect = 0.002 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 3/101 (2%) Frame = +3 Query: 45 DVYTYSILIKAF-VDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKL 221 D ++ L+K D D +D + + M E PN + NI+L G C R + +L Sbjct: 121 DAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALEL 180 Query: 222 LSAMLE--SANSKPDVWTMNIILSLFGNSGQVELMEKWYEK 338 L M + S PDV + +++ F G + Y + Sbjct: 181 LHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHE 221 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/88 (22%), Positives = 41/88 (46%) Frame = +3 Query: 42 PDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKL 221 PD TY+ ++ + + + K+M V P+ VT ++++ C+ GR + K+ Sbjct: 264 PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKI 323 Query: 222 LSAMLESANSKPDVWTMNIILSLFGNSG 305 +M + KP++ T +L + G Sbjct: 324 FDSMTK-RGLKPEITTYGTLLQGYATKG 350 Score = 35.8 bits (81), Expect = 0.027 Identities = 22/81 (27%), Positives = 36/81 (44%) Frame = +3 Query: 42 PDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKL 221 PD+ TY ILI A R DL A + ++ + + +L G C R D + Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144 Query: 222 LSAMLESANSKPDVWTMNIIL 284 + + P+V++ NI+L Sbjct: 145 VLRRMTELGCIPNVFSYNILL 165 Score = 35.4 bits (80), Expect = 0.035 Identities = 19/100 (19%), Positives = 45/100 (45%) Frame = +3 Query: 39 QPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEK 218 +P++ TY L++ + + + M + P+ +I++ Y + G++D Sbjct: 333 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAML 392 Query: 219 LLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEK 338 + S M + P+ T ++ + SG+VE ++E+ Sbjct: 393 VFSKMRQQ-GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431 Score = 35.0 bits (79), Expect = 0.046 Identities = 20/81 (24%), Positives = 36/81 (44%) Frame = +3 Query: 42 PDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKL 221 PD+ TY+I+++ R +Y + E T NI+L G C+ DD ++ Sbjct: 579 PDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQM 638 Query: 222 LSAMLESANSKPDVWTMNIIL 284 + + K + T NI++ Sbjct: 639 FQNLC-LMDLKLEARTFNIMI 658
>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915| Length = 463 Score = 44.3 bits (103), Expect = 8e-05 Identities = 26/91 (28%), Positives = 44/91 (48%) Frame = +3 Query: 42 PDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKL 221 PDV TY+ LI + + A+ + M + + P+ T N +++G R LD + L Sbjct: 46 PDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYL 105 Query: 222 LSAMLESANSKPDVWTMNIILSLFGNSGQVE 314 MLE PD+W+ N ++ + G+ E Sbjct: 106 FDEMLE-WGIYPDLWSYNTLMCCYFKLGKHE 135 Score = 40.0 bits (92), Expect = 0.001 Identities = 24/92 (26%), Positives = 44/92 (47%) Frame = +3 Query: 39 QPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEK 218 +PDV TY+ LI D V ++ EM E + P+ + N ++ Y + G+ ++ + Sbjct: 80 RPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFR 139 Query: 219 LLSAMLESANSKPDVWTMNIILSLFGNSGQVE 314 +L L+ A P T N++L G ++ Sbjct: 140 VLYKDLQLAGLNPGPDTYNVLLDALCKCGYID 171 Score = 39.3 bits (90), Expect = 0.002 Identities = 24/84 (28%), Positives = 44/84 (52%) Frame = +3 Query: 42 PDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKL 221 P TY++L+ A D ++KEM R P +T NI+++G C++ R+ + + Sbjct: 152 PGPDTYNVLLDALCKCGYIDNALELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAKWM 210 Query: 222 LSAMLESANSKPDVWTMNIILSLF 293 L+ + +S + P+ T IL L+ Sbjct: 211 LTELKKSGYT-PNAVTYTTILKLY 233 Score = 36.2 bits (82), Expect = 0.021 Identities = 16/63 (25%), Positives = 31/63 (49%) Frame = +3 Query: 45 DVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLL 224 D YT++I++ + + + + M E + N VT N ++ G C+AG +D + Sbjct: 327 DEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYF 386 Query: 225 SAM 233 +M Sbjct: 387 ESM 389 Score = 33.1 bits (74), Expect = 0.18 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +3 Query: 141 VAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNIILS 287 V P+ VT N ++SGYCR +++ + M A +PDV T N +++ Sbjct: 44 VDPDVVTYNTLISGYCRFVGIEEAYAVTRRM-RDAGIRPDVATYNSLIA 91 Score = 32.7 bits (73), Expect = 0.23 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = +3 Query: 39 QPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRL 203 +P++ TY+ILI + R M E+ + PN VT +L Y + R+ Sbjct: 185 KPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRI 239
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I| Length = 1261 Score = 40.4 bits (93), Expect = 0.001 Identities = 23/82 (28%), Positives = 39/82 (47%) Frame = +3 Query: 39 QPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEK 218 +P V+ Y+ ++ A R +++EM E + P +VT V++ CR G EK Sbjct: 923 KPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEK 982 Query: 219 LLSAMLESANSKPDVWTMNIIL 284 L + M N +P V N ++ Sbjct: 983 LFAEMENQPNYQPRVAPYNTMI 1004
>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)| (Leucine-rich PPR motif-containing protein) Length = 1273 Score = 36.6 bits (83), Expect = 0.016 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +3 Query: 45 DVYTYSILIKAFVDAP-RFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKL 221 DV Y+ L+K ++ +F D + K M E ++ PN VT +++ YC G ++ K+ Sbjct: 40 DVSHYNALLKVYLQNEYKFSPTDFLAK-MEEANIQPNRVTYQRLIASYCNVGDIEGASKI 98 Query: 222 LSAM 233 L M Sbjct: 99 LGFM 102 Score = 35.0 bits (79), Expect = 0.046 Identities = 21/100 (21%), Positives = 48/100 (48%) Frame = +3 Query: 39 QPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEK 218 QP+ TY LI ++ + + + M + + + +++G+ RAG +++ E Sbjct: 73 QPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAEN 132 Query: 219 LLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEK 338 +L+ M A +P T +L+ + G ++ +++ EK Sbjct: 133 ILTVM-RDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEK 171
>MYSH_ACACA (P47808) High molecular weight form of myosin-1 (High molecular| weight form of myosin I) (HMWMI) Length = 1577 Score = 33.5 bits (75), Expect = 0.13 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 10/105 (9%) Frame = +3 Query: 18 MKANPLCQPDVYTYSILIKAFVDAPR------FDLVDAMYKEMAERSVAPNTVTQNIVLS 179 + NP + +YT +++ + P+ +++ D Y+ M + N + Q+I++S Sbjct: 113 ISVNPFKRLPLYTPTVMDQYMHKVPKEMPPHTYNIADDAYRAMID-----NRMNQSILIS 167 Query: 180 GYCRAGRLDDMEKLLSAMLESANS----KPDVWTMNIILSLFGNS 302 G AG+ + ++ L+ E A S + ++ N IL FGN+ Sbjct: 168 GESGAGKTECTKQCLTYFAELAGSTNGVEQNILLANPILESFGNA 212
>MYSC_ACACA (P10569) Myosin IC heavy chain| Length = 1168 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 96 FDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTM- 272 + L D MY+ M S Q +++SG AG+ + +K++ + + + DV + Sbjct: 78 YALADDMYRTMLSESE-----DQCVIISGESGAGKTEASKKIMQYIAAVSGATGDVMRVK 132 Query: 273 NIILSLFGNS 302 ++IL FGN+ Sbjct: 133 DVILEAFGNA 142
>PLXA2_HUMAN (O75051) Plexin-A2 precursor (Semaphorin receptor OCT)| Length = 1909 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Frame = +1 Query: 112 LCTK--RWLSAPWRQTRSRRTLFSVATAGPEGWMIWRSYSRRCSKVQI--VNQMSGP 270 LC K R W R TL T+ W+ W S++ +CS QI + +SGP Sbjct: 828 LCLKADRKFECGWCSGERRCTLHQHCTSPSSPWLDWSSHNVKCSNPQITEILTVSGP 884
>DGKA_RAT (P51556) Diacylglycerol kinase alpha (EC 2.7.1.107) (Diglyceride| kinase alpha) (DGK-alpha) (DAG kinase alpha) (80 kDa diacylglycerol kinase) Length = 727 Score = 30.0 bits (66), Expect = 1.5 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +3 Query: 9 EEDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYC 188 E + KAN +C DVY Y L++ + + +Y +M + +T + I+L Sbjct: 84 ETESKANVICLSDVYCYFTLLEGGSPEDKLEFTFKLY-DMDRNGILDSTEVEKIILQMMR 142 Query: 189 RAGRLD-DMEKLLSAMLE 239 A LD D+ +L + E Sbjct: 143 VAEYLDWDVSELRPILQE 160
>STSYN_PEA (Q93XK2) Stachyose synthase precursor (EC 2.4.1.67)| (Galactinol--raffinose galactosyltransferase) Length = 853 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Frame = +3 Query: 90 PRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDME------KLLSAMLESANS 251 PRF ++D ++ ++ PN +N+VL G +GRL + K S +L NS Sbjct: 252 PRFVIIDDGWQSISFDGYDPNEDAKNLVLGGEQMSGRLHRFDECYKFRKYESGLLLGPNS 311 Query: 252 KP 257 P Sbjct: 312 PP 313
>FUS_PHODV (P28886) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 537 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +3 Query: 165 NIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNI 278 N+ + C LD+ EKLL+++LE N + T N+ Sbjct: 48 NVSIIDNCTKAELDEYEKLLNSVLEPINQALTLMTKNV 85
>PC11X_PANTR (Q71M42) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +3 Query: 6 HEEDMKANPLCQPDVYTYSILIKAFVD--APRFDLVDAMYKEMAERSVAPNT 155 H +KAN L QPD +++ FV+ L++ + ++ E V PNT Sbjct: 747 HRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT 798
>PC11X_PANPA (Q6WYY1) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +3 Query: 6 HEEDMKANPLCQPDVYTYSILIKAFVD--APRFDLVDAMYKEMAERSVAPNT 155 H +KAN L QPD +++ FV+ L++ + ++ E V PNT Sbjct: 747 HRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT 798
>PC11X_HUMAN (Q9BZA7) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) (PCDH-X) (Protocadherin-S) Length = 1347 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +3 Query: 6 HEEDMKANPLCQPDVYTYSILIKAFVD--APRFDLVDAMYKEMAERSVAPNT 155 H +KAN L QPD +++ FV+ L++ + ++ E V PNT Sbjct: 747 HRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT 798
>VIOA_CHRVO (Q9S3V1) Probable L-tryptophan oxidase vioA (EC 1.4.-.-)| Length = 418 Score = 28.5 bits (62), Expect = 4.3 Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Frame = -3 Query: 269 GPDIWFTICTFEHRRE*LLHIIQPSGPAVATENNVLRDRVW---RHGALSHLFVHSIDEV 99 G D W EHR L+ I PS A NV W R+G+L LF + Sbjct: 224 GDDGW----KLEHRTRHLILAIPPSAMAGL---NVDFPEAWSGARYGSLP-LFKGFLTYG 275 Query: 98 EPWGVDEGLDEYAIGVD 48 EPW +D LD+ + VD Sbjct: 276 EPWWLDYKLDDQVLIVD 292
>PC11Y_HUMAN (Q9BZA8) Protocadherin-11 Y-linked precursor (Protocadherin-11)| (Protocadherin-22) (Protocadherin on the Y chromosome) (PCDH-Y) (Protocadherin prostate cancer) (Protocadherin-PC) Length = 1340 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +3 Query: 6 HEEDMKANPLCQPDVYTYSILIKAFVD--APRFDLVDAMYKEMAERSVAPNT 155 H +KAN L QPD +++ FV+ L++ + ++ E V PNT Sbjct: 779 HRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNT 830
>POLN_FCVC6 (P27407) Non-structural polyprotein [Contains: p5.6; p32; Helicase| (2C-like protein) (p39); 3A-like protein (p30); Viral genome-linked protein (VPg) (p13); Thiol protease P3C (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA polymera Length = 1762 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 324 SPSAQPGHCSQTSLG*CSWSRHLVYYLHF 238 S SA G+C QT+LG C ++ L + HF Sbjct: 758 SLSALEGNCVQTALGVCMSNKDLTHLCHF 786
>PC11X_PONPY (Q6WXV7) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +3 Query: 6 HEEDMKANPLCQPDVYTYSILIKAFVD--APRFDLVDAMYKEMAERSVAPNT 155 H +KAN L QPD +++ FV+ L++ + ++ E V PNT Sbjct: 747 HRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNT 798
>PC11X_GORGO (Q6X862) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +3 Query: 6 HEEDMKANPLCQPDVYTYSILIKAFVD--APRFDLVDAMYKEMAERSVAPNT 155 H +KAN L QPD +++ FV+ L++ + ++ E V PNT Sbjct: 747 HRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNT 798
>Y476_PYRFU (Q8U3J0) Protein PF0476| Length = 252 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +3 Query: 204 DDMEKLLSAMLESANSKPDV 263 DD+E + S +LES N KPDV Sbjct: 44 DDVEDIRSVILESLNRKPDV 63
>PME4_ARATH (O80722) Pectinesterase-4 precursor (EC 3.1.1.11) (Pectin| methylesterase 4) (PE 4) (VANGUARD1-like protein 1) (VGD1-like protein 1) (AtPME4) Length = 588 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Frame = +1 Query: 100 TSSMLCTKRWLSAPWRQTRSRRTLFSVATAG----PEGWMIW--RSYSRRCSKVQIVNQM 261 T L +L PW++ + T+ G PEGW IW S+ + C V+ N+ Sbjct: 484 TPERLTVATYLGRPWKKFST--TVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRG 541 Query: 262 SG 267 G Sbjct: 542 PG 543
>Y4CA_RHISN (P55383) Hypothetical 133.7 kDa protein y4cA| Length = 1197 Score = 27.7 bits (60), Expect = 7.4 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = -3 Query: 275 VHGPDIWFTICTFEHRRE*LLHIIQPSGPAVATENNVLRDRVWRHGALSHLFVHSIDEVE 96 V PD+ RRE + I+ SGP T ++ +R W GA + LF H I E Sbjct: 292 VENPDV--------RRREMIAAIV--SGPVSETTDHDIRTLKWALGARADLFEHFITRCE 341
>DGKA_MOUSE (O88673) Diacylglycerol kinase alpha (EC 2.7.1.107) (Diglyceride| kinase alpha) (DGK-alpha) (DAG kinase alpha) (80 kDa diacylglycerol kinase) Length = 730 Score = 27.7 bits (60), Expect = 7.4 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = +3 Query: 21 KANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGR 200 KAN +C DVY Y L++ + + +Y +M + +T + I+L A Sbjct: 91 KANVICLSDVYCYFTLLEGGRPEDKLEFTFKLY-DMDRNGILDSTEVEKIILQMMRVAEY 149 Query: 201 LD-DMEKLLSAMLE 239 LD D+ +L + E Sbjct: 150 LDWDVSELRPILQE 163
>PME5_ARATH (Q5MFV8) Pectinesterase-5 precursor (EC 3.1.1.11) (Pectin| methylesterase 5) (PE 5) (VANGUARD 1 protein) Length = 595 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = +1 Query: 112 LCTKRWLSAPWRQTRSRRTLFSVA--TAGPEGWMIW--RSYSRRCSKVQIVNQMSG 267 L + +L PW++ + + S PEGW IW S+ + C V+ N+ G Sbjct: 495 LIVESYLGRPWKKFSTTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPG 550
>GLE1_DROME (Q9V4W1) Nucleoporin GLE1| Length = 677 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -3 Query: 188 AVATENNVLRDRVWRHGALSHLFVHSIDEVEPWGVDEGLDEYAIG 54 A AT +V DR+ + + L+ +D V+P +E L +Y G Sbjct: 361 ATATSTSVHPDRLKFYNDILALYQSKVDAVKPLQTEESLKQYRTG 405
>LEU2_CAMJE (Q9PLW1) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 470 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 102 LVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDME 215 L+DA+Y E+ V +IV G C GRL+D++ Sbjct: 321 LLDALYYVNLEQDQVIEGVKIDIVFIGSCTNGRLEDLK 358
>YLM5_CAEEL (P34379) Hypothetical protein D2007.5| Length = 443 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/44 (27%), Positives = 25/44 (56%) Frame = +3 Query: 198 RLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKW 329 R+D++ ++ + + + S P V T+ + L+ SGQ+ +E W Sbjct: 50 RIDELGEISAYLKSNIKSYPPVGTLTLEFLLYTPSGQLLPLEAW 93
>LEU2_CAMJR (Q5HS78) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 468 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 102 LVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDME 215 L+DA+Y E+ V +IV G C GRL+D++ Sbjct: 319 LLDALYYVNLEQDQVIEGVKIDIVFIGSCTNGRLEDLK 356
>DYH11_HUMAN (Q96DT5) Ciliary dynein heavy chain 11 (Axonemal beta dynein heavy| chain 11) Length = 4523 Score = 27.3 bits (59), Expect = 9.7 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +3 Query: 48 VYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAG---RLDDMEK 218 V + I I+ DA RFD VDA +KE+ + T VL CR +L D++ Sbjct: 1556 VCSEDIRIQLVKDARRFDGVDAEFKELMFK-----TAKVENVLEATCRPNLYEKLKDLQS 1610 Query: 219 LLS 227 LS Sbjct: 1611 RLS 1613 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,547,902 Number of Sequences: 219361 Number of extensions: 985127 Number of successful extensions: 2997 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2912 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2995 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
