ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baak0a08 |
|---|---|
| Clone Library Name | barley_pub |
>HMGCL_CHICK (P35915) Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA| lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) Length = 298 Score = 163 bits (413), Expect = 3e-40 Identities = 83/148 (56%), Positives = 98/148 (66%) Frame = +1 Query: 121 PRFVKVVEVGPRDGLQNEKNIVPTSVKIELIHKLVASGLSVVEATSFVSPRWVPQLADAK 300 P+ VKVVEVGPRDGLQNEK++VPT VKI LI L +GL V+EATSFVSPRWVPQ+AD Sbjct: 3 PQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMADHA 62 Query: 301 DVLEGIQHAPDVRFPVLTPNLRXXXXXXXXXXXXXXXXXXXXXXXXXXNINCTIEESLAR 480 +V++GI P V +PVLTPNL+ NINC+IEESL R Sbjct: 63 EVMQGINKLPGVSYPVLTPNLKGFQAAVAAGAKEVSIFGAASELFTKKNINCSIEESLER 122 Query: 481 YREVTCAAKKHGIRVRGYVSCVVGCPVE 564 + EV AA+ I VRGYVSCV+GCP E Sbjct: 123 FSEVMNAARAASIPVRGYVSCVLGCPYE 150
>HMGCL_RAT (P97519) Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor| (EC 4.1.3.4) (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) Length = 325 Score = 161 bits (407), Expect = 1e-39 Identities = 80/149 (53%), Positives = 98/149 (65%) Frame = +1 Query: 118 LPRFVKVVEVGPRDGLQNEKNIVPTSVKIELIHKLVASGLSVVEATSFVSPRWVPQLADA 297 LP+ VK+VEVGPRDGLQNEK+IVPT VKI+LI L +GL V+EATSFVSP+WVPQ+AD Sbjct: 29 LPKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSFVSPKWVPQMADH 88 Query: 298 KDVLEGIQHAPDVRFPVLTPNLRXXXXXXXXXXXXXXXXXXXXXXXXXXNINCTIEESLA 477 DVL+GIQ P + +PVLTPN++ N+NC+IEES Sbjct: 89 SDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSIFGAASELFTRKNVNCSIEESFQ 148 Query: 478 RYREVTCAAKKHGIRVRGYVSCVVGCPVE 564 R+ V AA+ I VRGYVSC +GCP E Sbjct: 149 RFDGVMQAARAASISVRGYVSCALGCPYE 177
>HMGCL_MACFA (Q8HXZ6) Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor| (EC 4.1.3.4) (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) Length = 325 Score = 160 bits (404), Expect = 3e-39 Identities = 80/149 (53%), Positives = 98/149 (65%) Frame = +1 Query: 118 LPRFVKVVEVGPRDGLQNEKNIVPTSVKIELIHKLVASGLSVVEATSFVSPRWVPQLADA 297 LP+ VK+VEVGPRDGLQNEKNIV T VKI+LI L +GLSV+EATSFVSP+WVPQ+AD Sbjct: 29 LPKQVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIEATSFVSPKWVPQMADH 88 Query: 298 KDVLEGIQHAPDVRFPVLTPNLRXXXXXXXXXXXXXXXXXXXXXXXXXXNINCTIEESLA 477 +VL+GIQ P + +PVL PNL+ N+NC+IEES Sbjct: 89 AEVLKGIQKFPGITYPVLIPNLKGFEAAVAAGAKEVSIFGAASELFTKKNVNCSIEESFQ 148 Query: 478 RYREVTCAAKKHGIRVRGYVSCVVGCPVE 564 R+ + AA+ I VRGYVSCV+GCP E Sbjct: 149 RFDAILKAAQSANISVRGYVSCVLGCPYE 177
>HMGCL_PONPY (Q5R9E1) Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor| (EC 4.1.3.4) (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) Length = 325 Score = 159 bits (402), Expect = 5e-39 Identities = 81/159 (50%), Positives = 99/159 (62%) Frame = +1 Query: 88 RALPRKVSWDLPRFVKVVEVGPRDGLQNEKNIVPTSVKIELIHKLVASGLSVVEATSFVS 267 RA+ LP+ VK+VEVGPRDGLQNEKNIV T VKI+LI L +GLSV+E TSFVS Sbjct: 19 RAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVS 78 Query: 268 PRWVPQLADAKDVLEGIQHAPDVRFPVLTPNLRXXXXXXXXXXXXXXXXXXXXXXXXXXN 447 P+WVPQ+ D +VL+GIQ P + +PVLTPNL+ N Sbjct: 79 PKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVAIFGAASELFTKKN 138 Query: 448 INCTIEESLARYREVTCAAKKHGIRVRGYVSCVVGCPVE 564 INC+IEES R+ + AA+ I VRGYVSC +GCP E Sbjct: 139 INCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYE 177
>HMGCL_MOUSE (P38060) Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor| (EC 4.1.3.4) (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) Length = 325 Score = 159 bits (401), Expect = 7e-39 Identities = 82/159 (51%), Positives = 98/159 (61%) Frame = +1 Query: 88 RALPRKVSWDLPRFVKVVEVGPRDGLQNEKNIVPTSVKIELIHKLVASGLSVVEATSFVS 267 RA+ LP+ VK+VEVGPRDGLQNEK+IVPT VKI LI L +GL V+EATSFVS Sbjct: 19 RAVSTSSMGTLPKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPVIEATSFVS 78 Query: 268 PRWVPQLADAKDVLEGIQHAPDVRFPVLTPNLRXXXXXXXXXXXXXXXXXXXXXXXXXXN 447 P WVPQ+AD DVL+GIQ P + +PVLTPN++ N Sbjct: 79 PNWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSVFGAVSELFTRKN 138 Query: 448 INCTIEESLARYREVTCAAKKHGIRVRGYVSCVVGCPVE 564 NC+IEES R+ V AA+ I VRGYVSC +GCP E Sbjct: 139 ANCSIEESFQRFAGVMQAAQAASISVRGYVSCALGCPYE 177
>HMGCL_HUMAN (P35914) Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor| (EC 4.1.3.4) (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) Length = 325 Score = 159 bits (401), Expect = 7e-39 Identities = 81/159 (50%), Positives = 99/159 (62%) Frame = +1 Query: 88 RALPRKVSWDLPRFVKVVEVGPRDGLQNEKNIVPTSVKIELIHKLVASGLSVVEATSFVS 267 RA+ LP+ VK+VEVGPRDGLQNEKNIV T VKI+LI L +GLSV+E TSFVS Sbjct: 19 RAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVS 78 Query: 268 PRWVPQLADAKDVLEGIQHAPDVRFPVLTPNLRXXXXXXXXXXXXXXXXXXXXXXXXXXN 447 P+WVPQ+ D +VL+GIQ P + +PVLTPNL+ N Sbjct: 79 PKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKN 138 Query: 448 INCTIEESLARYREVTCAAKKHGIRVRGYVSCVVGCPVE 564 INC+IEES R+ + AA+ I VRGYVSC +GCP E Sbjct: 139 INCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYE 177
>HMGCL_PSEMV (P13703) Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA| lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) Length = 301 Score = 119 bits (297), Expect = 8e-27 Identities = 61/143 (42%), Positives = 81/143 (56%) Frame = +1 Query: 130 VKVVEVGPRDGLQNEKNIVPTSVKIELIHKLVASGLSVVEATSFVSPRWVPQLADAKDVL 309 VKV EVGPRDGLQNE+ + + ++ LI +L +GL +EA +FVSPRWVPQ+A + +VL Sbjct: 4 VKVFEVGPRDGLQNERQPLSVAARVGLIGELAGTGLRHIEAGAFVSPRWVPQMAGSDEVL 63 Query: 310 EGIQHAPDVRFPVLTPNLRXXXXXXXXXXXXXXXXXXXXXXXXXXNINCTIEESLARYRE 489 + V + L PN + NINC+I+ES R+ Sbjct: 64 RQLPSNDGVSYTALVPNRQGFEAAQRAGCREVAVFAAASEAFSRNNINCSIDESFERFTP 123 Query: 490 VTCAAKKHGIRVRGYVSCVVGCP 558 V AA + IRVRGYVSCV+GCP Sbjct: 124 VLRAANEASIRVRGYVSCVLGCP 146
>SYV_THETN (Q8RBN5) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 879 Score = 31.6 bits (70), Expect = 1.6 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -1 Query: 399 FCTSCNSSLESSEVRS*HRKSHIWCMLDPFK 307 +C SCN++L +EV K H+W + P K Sbjct: 178 WCPSCNTALSDAEVEHKEHKGHLWYIKYPVK 208
>LEU1A_LYCPN (O04973) 2-isopropylmalate synthase A (EC 2.3.3.13)| (Alpha-isopropylmalate synthase A) (Alpha-IPM synthetase A) Length = 589 Score = 31.2 bits (69), Expect = 2.1 Identities = 15/53 (28%), Positives = 31/53 (58%) Frame = +1 Query: 94 LPRKVSWDLPRFVKVVEVGPRDGLQNEKNIVPTSVKIELIHKLVASGLSVVEA 252 +P K+S P++V++ + RDG Q+ + T K+++ +L G+ ++EA Sbjct: 38 VPSKISD--PKYVRIFDTTLRDGEQSPGATMTTKEKLDVARQLAKLGVDIIEA 88
>SYFB_PROAC (Q6A7V6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 839 Score = 30.4 bits (67), Expect = 3.6 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +1 Query: 184 VPTSVKIELIHKLVASGLSVVEATSFVSPRWVPQLADAKDVLEGI 318 VPT IE++ + ++ ++ V+P W P L DA D +E I Sbjct: 441 VPTEEVIEILTRSGVKVTALGDSLHLVAPTWRPDLVDAYDYVEEI 485
>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4| precursor Length = 605 Score = 30.4 bits (67), Expect = 3.6 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%) Frame = -2 Query: 350 NTGNRTSGACWIPSRTSFASASCGTHLGETKLVASTTDR---------PEATNLCISSIF 198 +T T+ + I + TS +S+S T + STT P +++ SS Sbjct: 220 STTTSTTSSTLISTSTSSSSSSTPTTTSSAPISTSTTSSTSTSTSTTSPTSSSAPTSSSN 279 Query: 197 TDVGTMFFSFCSPSRGPTSTTFT 129 T + F+ SPS P+STT T Sbjct: 280 TTPTSTTFTTTSPSTAPSSTTVT 302
>MT3_BOVIN (P37359) Metallothionein-3 (MT-3) (Metallothionein-III) (MT-III)| (Growth inhibitory factor) (GIF) Length = 68 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Frame = +3 Query: 315 DPACTRCAI--SCVNS*PQRIRGCCCSWCKRSC 407 DP C SC S P + GC C+ CK+SC Sbjct: 2 DPETCPCPTGGSCTCSDPCKCEGCTCASCKKSC 34
>TCR_STRAG (P13924) Tetracycline resistance protein| Length = 458 Score = 30.0 bits (66), Expect = 4.7 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = +1 Query: 127 FVKVVEVGPRDGLQNEKNIVPTSVKIELIHKLVASGLSVVEATSFVS 267 F+ ++ V GL K ++PT V L + +G+S++ TSF+S Sbjct: 350 FMTIIIVFVLGGLSFTKTVIPTIVSSSLKQQEAGAGMSLLNFTSFLS 396
>LEU1_DEIRA (Q9RUA9) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 522 Score = 29.6 bits (65), Expect = 6.1 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +1 Query: 130 VKVVEVGPRDGLQNEKNIVPTSVKIELIHKLVASGLSVVEATSFVSPRWVPQLADAKDVL 309 +++ + RDG Q+ + + K+E+ H L G+ V+EA +A D L Sbjct: 16 IRIFDTTLRDGEQSPGVALNHAQKLEIAHTLARMGVDVIEAGF--------PIASPGD-L 66 Query: 310 EGIQH-APDVRFPVLT 354 EG+ A +VR PV+T Sbjct: 67 EGVSRIAREVRGPVIT 82
>Y4JQ_RHISN (P55517) Hypothetical 115.9 kDa protein y4jQ| Length = 1039 Score = 29.6 bits (65), Expect = 6.1 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +1 Query: 244 VEATSFVSP---RWVPQLADAKDVLEGIQHAPDVRFPVLTPN 360 VE + F P RW L D+ +L+G+ APD F + N Sbjct: 299 VEPSRFTIPLLNRWCGYLLDSIGILDGVSSAPDREFDIALAN 340
>X_HBVW2 (P69713) Trans-activating protein X| Length = 154 Score = 29.3 bits (64), Expect = 8.0 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -1 Query: 339 SHIWCMLDPFKDILCIS*LWHPSRGNKTCG 250 + ++C LDP +D+LC+ + SRG G Sbjct: 3 ARLYCQLDPSRDVLCLRPVGAESRGRPLSG 32
>X_HBVAW (P69714) Trans-activating protein X| Length = 154 Score = 29.3 bits (64), Expect = 8.0 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -1 Query: 339 SHIWCMLDPFKDILCIS*LWHPSRGNKTCG 250 + ++C LDP +D+LC+ + SRG G Sbjct: 3 ARLYCQLDPSRDVLCLRPVGAESRGRPLSG 32 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,045,389 Number of Sequences: 219361 Number of extensions: 1985041 Number of successful extensions: 6724 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 6230 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6696 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
