Clone Name | baak0a07 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | U308_ARATH (Q9ZUU2) UPF0308 protein At2g37240, chloroplast precu... | 176 | 4e-44 | 2 | CI021_MOUSE (Q9D1A0) UPF0308 protein C9orf21 homolog | 35 | 0.089 | 3 | CI021_HUMAN (Q7RTV5) UPF0308 protein C9orf21 | 35 | 0.12 | 4 | CJ058_RAT (Q6AXX6) Protein C10orf58 homolog precursor | 33 | 0.34 | 5 | CJ058_MOUSE (Q9CYH2) Protein C10orf58 homolog precursor | 33 | 0.58 | 6 | CJ058_HUMAN (Q9BRX8) Protein C10orf58 precursor | 32 | 0.75 | 7 | CRTC_CHLRE (Q9STD3) Calreticulin precursor | 32 | 0.98 | 8 | Y4JQ_RHISN (P55517) Hypothetical 115.9 kDa protein y4jQ | 32 | 1.3 | 9 | CWC24_ASPFU (Q4WUA0) Pre-mRNA-splicing factor cwc24 | 30 | 3.7 |
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>U308_ARATH (Q9ZUU2) UPF0308 protein At2g37240, chloroplast precursor| Length = 248 Score = 176 bits (445), Expect = 4e-44 Identities = 77/116 (66%), Positives = 98/116 (84%) Frame = +3 Query: 39 GPGTVEQAKVFSDQTKFKGEVYADPDYSSYRALEFANGLFSTFTPSAGLKIIQLYREGYR 218 GPG+++QA F +QTKFKGEVYADP+++SY ALEF +G+ TFTP A +KI++ Y EGYR Sbjct: 133 GPGSIDQANTFVEQTKFKGEVYADPNHASYEALEFVSGVSVTFTPKAAMKILESYMEGYR 192 Query: 219 QDWELSFEKNTRTKGGWYQGGLLVAGPGIDNISYIHKDKEAGDDPEMEDVLRACCS 386 QDW+LSF K+T +GGW QGG+LVAGPG DNISYI KDKEAGDDP +E++L+ACC+ Sbjct: 193 QDWKLSFMKDTVERGGWQQGGILVAGPGKDNISYIRKDKEAGDDPPVEEILKACCA 248
>CI021_MOUSE (Q9D1A0) UPF0308 protein C9orf21 homolog| Length = 226 Score = 35.4 bits (80), Expect = 0.089 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 2/114 (1%) Frame = +3 Query: 39 GPGTVEQAKVFSDQTKFKGEVYADPDYSSYRALEFANG-LFSTFTPSAGLKIIQLYREGY 215 G + + F T + E+Y DP+ Y+ L G S+ S +K L Sbjct: 97 GQSSYHHIEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEISSSGQSPHIK-SNLLSGSL 155 Query: 216 RQDWELSFEKNTRTKGG-WYQGGLLVAGPGIDNISYIHKDKEAGDDPEMEDVLR 374 + W +G QGG L+ GPG +NI ++H+D+ D + VL+ Sbjct: 156 QSLWRAVTGPLFDFQGDPAQQGGTLILGPG-NNIHFVHRDRNRLDHKPINSVLQ 208
>CI021_HUMAN (Q7RTV5) UPF0308 protein C9orf21| Length = 226 Score = 35.0 bits (79), Expect = 0.12 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 1/113 (0%) Frame = +3 Query: 39 GPGTVEQAKVFSDQTKFKGEVYADPDYSSYRALEFANGLFSTFTPSAGLKIIQLYREGYR 218 G + + F T + E+Y DP+ Y+ L G + + L + Sbjct: 97 GQSSYHHIEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGQSPHIKSNLLSGSLQ 156 Query: 219 QDWELSFEKNTRTKGG-WYQGGLLVAGPGIDNISYIHKDKEAGDDPEMEDVLR 374 W +G QGG L+ GPG +NI +IH+D+ D + VL+ Sbjct: 157 SLWRAVTGPLFDFQGDPAQQGGTLILGPG-NNIHFIHRDRNRLDHKPINSVLQ 208
>CJ058_RAT (Q6AXX6) Protein C10orf58 homolog precursor| Length = 229 Score = 33.5 bits (75), Expect = 0.34 Identities = 28/100 (28%), Positives = 42/100 (42%) Frame = +3 Query: 78 QTKFKGEVYADPDYSSYRALEFANGLFSTFTPSAGLKIIQLYREGYRQDWELSFEKNTRT 257 Q FKGE++ D Y L GL + ++ +R W+ F N Sbjct: 125 QPYFKGEIFLDEKKKFYGPERRKMMLM-------GLVRLGVWYNSFRA-WKGGFSGNFEG 176 Query: 258 KGGWYQGGLLVAGPGIDNISYIHKDKEAGDDPEMEDVLRA 377 +G + GG+ V G G + H++KE GD + VL A Sbjct: 177 EG-FILGGVFVIGSGKQGVLLEHREKEFGDRVNLLSVLEA 215
>CJ058_MOUSE (Q9CYH2) Protein C10orf58 homolog precursor| Length = 218 Score = 32.7 bits (73), Expect = 0.58 Identities = 30/100 (30%), Positives = 42/100 (42%) Frame = +3 Query: 78 QTKFKGEVYADPDYSSYRALEFANGLFSTFTPSAGLKIIQLYREGYRQDWELSFEKNTRT 257 Q FKGE++ D Y E +F GL + ++ +R W F N Sbjct: 114 QPYFKGEIFLDEKKKFYGP-ERRKMMFM------GLIRLGVWYNSFRA-WNGGFSGNLEG 165 Query: 258 KGGWYQGGLLVAGPGIDNISYIHKDKEAGDDPEMEDVLRA 377 +G + GG+ V G G I H++KE GD VL A Sbjct: 166 EG-FILGGVFVIGSGKQGILLEHREKEFGDRVNPLSVLEA 204
>CJ058_HUMAN (Q9BRX8) Protein C10orf58 precursor| Length = 229 Score = 32.3 bits (72), Expect = 0.75 Identities = 28/100 (28%), Positives = 43/100 (43%) Frame = +3 Query: 78 QTKFKGEVYADPDYSSYRALEFANGLFSTFTPSAGLKIIQLYREGYRQDWELSFEKNTRT 257 Q FKGE++ D Y + +F F +++ Y + + W F N Sbjct: 125 QPYFKGEIFLDEKKKFYGP-QRRKMMFMGF-----IRLGVWYN--FFRAWNGGFSGNLEG 176 Query: 258 KGGWYQGGLLVAGPGIDNISYIHKDKEAGDDPEMEDVLRA 377 +G + GG+ V G G I H++KE GD + VL A Sbjct: 177 EG-FILGGVFVVGSGKQGILLEHREKEFGDKVNLLSVLEA 215
>CRTC_CHLRE (Q9STD3) Calreticulin precursor| Length = 420 Score = 32.0 bits (71), Expect = 0.98 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = +3 Query: 213 YRQDWELSFEKNTRTKGGWYQGGLLVAGPGIDNISYIHKDK 335 Y+ +W+ KN KG W P IDN Y+H DK Sbjct: 275 YKGEWKAKMIKNPAYKGIW-------VAPDIDNPDYVHDDK 308
>Y4JQ_RHISN (P55517) Hypothetical 115.9 kDa protein y4jQ| Length = 1039 Score = 31.6 bits (70), Expect = 1.3 Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Frame = +3 Query: 252 RTKG-----GWYQGGLLVAGPGIDNISYIHKDKEAGDDPEMEDVLRACCS*IFS 398 RTKG W QG L VA P I NI K + D DVL IFS Sbjct: 158 RTKGLDAQRRWMQGSLYVANPSISNIILYSKGIASEGDRHPSDVLEVLNRFIFS 211
>CWC24_ASPFU (Q4WUA0) Pre-mRNA-splicing factor cwc24| Length = 339 Score = 30.0 bits (66), Expect = 3.7 Identities = 19/60 (31%), Positives = 27/60 (45%) Frame = +3 Query: 204 REGYRQDWELSFEKNTRTKGGWYQGGLLVAGPGIDNISYIHKDKEAGDDPEMEDVLRACC 383 RE Y+Q WEL E TKG G ++ G + +D E DD E+ + + C Sbjct: 197 REDYKQGWELDREWEIGTKGKQLSGRVVSKRSGDAKTA---EDDEDDDDEELLESIPFAC 253 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,138,642 Number of Sequences: 219361 Number of extensions: 1447889 Number of successful extensions: 3495 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3438 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3492 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)