ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak0a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK110712.1| Oryza sativa (japonica cultivar-group) cDNA clon... 351 1e-93
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 96 1e-16
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
4gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome... 96 1e-16
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
6dbj|AP003736.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
7dbj|AP005786.2| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
8dbj|AK064568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
9gb|AC122010.3| Mus musculus BAC clone RP24-349I15 from chromosom... 44 0.44
10emb|CR382363.14| Zebrafish DNA sequence from clone DKEY-23P11 in... 44 0.44
11gb|AC026811.5| Homo sapiens chromosome 5 clone RP3_474K3, comple... 44 0.44
12gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Canc... 42 1.7
13gb|AC132342.3| Mus musculus BAC clone RP24-168N15 from chromosom... 42 1.7
14ref|XM_386665.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 1.7
15gb|AC122296.4| Mus musculus BAC clone RP23-265P8 from 6, complet... 42 1.7
16gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 42 1.7
17emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.7
18gb|AC105213.5| Homo sapiens chromosome 8, clone RP11-346A14, com... 42 1.7
19dbj|AK039826.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 42 1.7
20gb|AC139764.5| Homo sapiens 3 BAC RP11-125N10 (Roswell Park Canc... 42 1.7
21gb|AC151349.2| Xenopus tropicalis clone ISB-39N3, complete sequence 42 1.7
22gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone... 42 1.7
23gb|AC151325.2| Xenopus tropicalis clone ISB-280A23, complete seq... 42 1.7
24ref|NM_129280.2| Arabidopsis thaliana unknown protein AT2G37240 ... 40 6.9
25gb|AY323752.1| Ambystoma mexicanum Rag-1 gene, partial cds 40 6.9
26gb|AC116480.10| Mus musculus chromosome 12, clone RP23-398M9, co... 40 6.9
27gb|AC124171.3| Mus musculus BAC clone RP23-167E23 from chromosom... 40 6.9
28gb|AC124465.6| Mus musculus BAC clone RP24-156M16 from chromosom... 40 6.9
29ref|XM_759363.1| Theileria parva strain Muguga chromosome 4 hypo... 40 6.9
30gb|AC164163.2| Mus musculus BAC clone RP23-243L21 from chromosom... 40 6.9
31ref|XM_681678.1| PREDICTED: Danio rerio similar to LIM domain ki... 40 6.9
32ref|XM_681513.1| PREDICTED: Danio rerio similar to mLimk1 (LOC55... 40 6.9
33gb|AY050345.1| Arabidopsis thaliana At2g37240/F3G5.3 mRNA, compl... 40 6.9
34gb|BT006337.1| Arabidopsis thaliana At2g37240/F3G5.3 gene, compl... 40 6.9
35gb|AC121569.4| Mus musculus BAC clone RP23-228C13 from chromosom... 40 6.9
36gb|AY691718.1| Plethodon yonahlossee voucher RMB 2458 recombinat... 40 6.9
37gb|AY650131.1| Ambystoma gracile recombination activating protei... 40 6.9
38gb|AY650130.1| Ambystoma opacum recombination activating protein... 40 6.9
39gb|AC011235.4| Homo sapiens BAC clone RP11-295A19 from 2, comple... 40 6.9
40gb|AY088891.1| Arabidopsis thaliana clone 98881 mRNA, complete s... 40 6.9
41gb|U82696.2| Homo sapiens chromosome X clone ICRFXc104-F064, ICR... 40 6.9
42gb|AF274855.3| Homo sapiens chromosome X clone RP11-366F6 map q2... 40 6.9
43emb|BX649570.7| Zebrafish DNA sequence from clone CH211-13L22 in... 40 6.9
44emb|BX004995.15| Zebrafish DNA sequence from clone CH211-179G4 i... 40 6.9
45gb|AC124991.14| Mus musculus chromosome 12, clone RP23-138M19, c... 40 6.9
46emb|CT030235.12| Mouse DNA sequence from clone RP23-240F19 on ch... 40 6.9
47gb|U15611.1|AMU15611 Ambystoma mexicanum recombinase activating ... 40 6.9 
>dbj|AK110712.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-D02, full
           insert sequence
          Length = 938

 Score =  351 bits (177), Expect = 1e-93
 Identities = 331/381 (86%), Gaps = 1/381 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctgcaggagtttctcttgttttaatncggaccaggtactgttgaacaggcaaaggtgttt 71
           ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||  |||
Sbjct: 456 ctgcaggggttgctcttgttttaat-cggaccaggtactgttgaacaggcaaaggcattt 514

                                                                       
Query: 72  tctgatcaaaccaaattcaaaggagaagtatatgccgatccggattactcatcatatagg 131
           | ||| |||||||||||||||||||||||||| || |||||   | ||||||||||||  
Sbjct: 515 tatgaccaaaccaaattcaaaggagaagtatacgctgatccaagtcactcatcatataat 574

                                                                       
Query: 132 gctctggaatttgccaatggcttgttctcaacattcactccatcggcgggtctgaagatt 191
           || || ||||||||   |||  |||||||||| || ||||||||||| ||| ||||||||
Sbjct: 575 gcccttgaatttgcatttgggctgttctcaacgtttactccatcggccggtttgaagatt 634

                                                                       
Query: 192 atacagctgtacagggaagggtacaggcaggactgggaactgtcatttgaaaagaacacc 251
           |||||| |||||| |||||| ||||||||||| ||||||||||| || || |||| ||||
Sbjct: 635 atacagttgtacatggaaggatacaggcaggattgggaactgtcgttcgagaagaccacc 694

                                                                       
Query: 252 aggacgaaaggcggatggtatcaagggggcctccttgttgcaggcccaggcatcgacaac 311
           || |||||||| |||||||||||||||||||| ||||||||||| | |||||||||||| 
Sbjct: 695 agaacgaaaggtggatggtatcaagggggcctacttgttgcaggactaggcatcgacaat 754

                                                                       
Query: 312 atctcctacatccacaaggacaaagaagctggagatgaccctgaaatggaggatgttttg 371
           || |  || |||||||||||||||||||| |||||||||||||| ||||| ||||| |||
Sbjct: 755 attttgtatatccacaaggacaaagaagcaggagatgaccctgacatggatgatgtcttg 814

                                
Query: 372 agagcttgttgttcctagatc 392
           | |||||| ||||||||||||
Sbjct: 815 aaagcttgctgttcctagatc 835
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                           
Query: 184     tgaagattatacagctgtacagggaagggtacaggcaggactgggaactgtcatttgaaa 243
               |||||||||||||| |||||| |||||| ||||||||||| ||||||||||| || || |
Sbjct: 9763311 tgaagattatacagttgtacatggaaggatacaggcaggattgggaactgtcgttcgaga 9763370

                                           
Query: 244     agaacaccaggacgaaaggcggatggta 271
               ||| |||||| |||||||| ||||||||
Sbjct: 9763371 agaccaccagaacgaaaggtggatggta 9763398



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                           
Query: 328     aggacaaagaagctggagatgaccctgaaatggaggatgttttgagagcttgttgttcct 387
               ||||||||||||| |||||||||||||| ||||| ||||| |||| |||||| |||||||
Sbjct: 9763686 aggacaaagaagcaggagatgaccctgacatggatgatgtcttgaaagcttgctgttcct 9763745

                    
Query: 388     agatc 392
               |||||
Sbjct: 9763746 agatc 9763750



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                          
Query: 268     ggtatcaagggggcctccttgttgcaggcccaggcatcgacaa 310
               |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 9763491 ggtatcaagggggcctacttgttgcaggaccaggcatcgacaa 9763533



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 46/49 (93%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                                
Query: 12      ctgcaggagtttctcttgttttaatncggaccaggtactgttgaacagg 60
               ||||||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 9761866 ctgcaggggttgctcttgttttaat-cggaccaggtactgttgaacagg 9761913



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 57      caggcaaaggtgttttctgatcaaaccaaattcaaaggag 96
               ||||||||||  |||| ||| |||||||||||||||||||
Sbjct: 9762395 caggcaaaggcattttatgaccaaaccaaattcaaaggag 9762434
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                           
Query: 184     tgaagattatacagctgtacagggaagggtacaggcaggactgggaactgtcatttgaaa 243
               |||||||||||||| |||||| |||||| ||||||||||| ||||||||||| || || |
Sbjct: 9761432 tgaagattatacagttgtacatggaaggatacaggcaggattgggaactgtcgttcgaga 9761491

                                           
Query: 244     agaacaccaggacgaaaggcggatggta 271
               ||| |||||| |||||||| ||||||||
Sbjct: 9761492 agaccaccagaacgaaaggtggatggta 9761519



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                           
Query: 328     aggacaaagaagctggagatgaccctgaaatggaggatgttttgagagcttgttgttcct 387
               ||||||||||||| |||||||||||||| ||||| ||||| |||| |||||| |||||||
Sbjct: 9761807 aggacaaagaagcaggagatgaccctgacatggatgatgtcttgaaagcttgctgttcct 9761866

                    
Query: 388     agatc 392
               |||||
Sbjct: 9761867 agatc 9761871



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                          
Query: 268     ggtatcaagggggcctccttgttgcaggcccaggcatcgacaa 310
               |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 9761612 ggtatcaagggggcctacttgttgcaggaccaggcatcgacaa 9761654



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 46/49 (93%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                                
Query: 12      ctgcaggagtttctcttgttttaatncggaccaggtactgttgaacagg 60
               ||||||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 9759987 ctgcaggggttgctcttgttttaat-cggaccaggtactgttgaacagg 9760034



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 57      caggcaaaggtgttttctgatcaaaccaaattcaaaggag 96
               ||||||||||  |||| ||| |||||||||||||||||||
Sbjct: 9760516 caggcaaaggcattttatgaccaaaccaaattcaaaggag 9760555
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>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0013D02,
              complete sequence
          Length = 131883

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                          
Query: 184    tgaagattatacagctgtacagggaagggtacaggcaggactgggaactgtcatttgaaa 243
              |||||||||||||| |||||| |||||| ||||||||||| ||||||||||| || || |
Sbjct: 111186 tgaagattatacagttgtacatggaaggatacaggcaggattgggaactgtcgttcgaga 111127

                                          
Query: 244    agaacaccaggacgaaaggcggatggta 271
              ||| |||||| |||||||| ||||||||
Sbjct: 111126 agaccaccagaacgaaaggtggatggta 111099



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                          
Query: 328    aggacaaagaagctggagatgaccctgaaatggaggatgttttgagagcttgttgttcct 387
              ||||||||||||| |||||||||||||| ||||| ||||| |||| |||||| |||||||
Sbjct: 110811 aggacaaagaagcaggagatgaccctgacatggatgatgtcttgaaagcttgctgttcct 110752

                   
Query: 388    agatc 392
              |||||
Sbjct: 110751 agatc 110747



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                         
Query: 268    ggtatcaagggggcctccttgttgcaggcccaggcatcgacaa 310
              |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 111006 ggtatcaagggggcctacttgttgcaggaccaggcatcgacaa 110964



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 46/49 (93%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                               
Query: 12     ctgcaggagtttctcttgttttaatncggaccaggtactgttgaacagg 60
              ||||||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 112631 ctgcaggggttgctcttgttttaat-cggaccaggtactgttgaacagg 112584



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                      
Query: 57     caggcaaaggtgttttctgatcaaaccaaattcaaaggag 96
              ||||||||||  |||| ||| |||||||||||||||||||
Sbjct: 112102 caggcaaaggcattttatgaccaaaccaaattcaaaggag 112063
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 41/44 (93%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                            
Query: 13       tgcaggagtttctcttgttttaatncggaccaggtactgttgaa 56
                |||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct: 21338283 tgcaggggttgctcttgttttaat-cggaccaggtactgttgaa 21338241
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>dbj|AP003736.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1008_E09
          Length = 101964

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 41/44 (93%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 13    tgcaggagtttctcttgttttaatncggaccaggtactgttgaa 56
             |||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct: 58451 tgcaggggttgctcttgttttaat-cggaccaggtactgttgaa 58409
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>dbj|AP005786.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0458H05
          Length = 136299

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 41/44 (93%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                          
Query: 13     tgcaggagtttctcttgttttaatncggaccaggtactgttgaa 56
              |||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct: 124568 tgcaggggttgctcttgttttaat-cggaccaggtactgttgaa 124526
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>dbj|AK064568.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-D06, full
            insert sequence
          Length = 1763

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 41/44 (93%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                        
Query: 13   tgcaggagtttctcttgttttaatncggaccaggtactgttgaa 56
            |||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct: 1402 tgcaggggttgctcttgttttaat-cggaccaggtactgttgaa 1444
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>gb|AC122010.3| Mus musculus BAC clone RP24-349I15 from chromosome 8, complete sequence
          Length = 198118

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 434    aactcctttagtatacccactgccac 459
              |||||||||||| |||||||||||||
Sbjct: 130587 aactcctttagtctacccactgccac 130612
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>emb|CR382363.14| Zebrafish DNA sequence from clone DKEY-23P11 in linkage group 25,
             complete sequence
          Length = 129281

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 386   ctagatctttagtattgctttgatctgaga 415
             ||||||||||||||| | ||||||||||||
Sbjct: 81483 ctagatctttagtatagttttgatctgaga 81454
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>gb|AC026811.5| Homo sapiens chromosome 5 clone RP3_474K3, complete sequence
          Length = 159147

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 348   gaccctgaaatggaggatgttttgag 373
             |||||||||||| |||||||||||||
Sbjct: 47780 gaccctgaaatgcaggatgttttgag 47755
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>gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 241022

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 15     caggagtttctcttgttttaa 35
              |||||||||||||||||||||
Sbjct: 209265 caggagtttctcttgttttaa 209285
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>gb|AC132342.3| Mus musculus BAC clone RP24-168N15 from chromosome 12, complete sequence
          Length = 165700

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 440    tttagtatacccactgccaca 460
              |||||||||||||||||||||
Sbjct: 130318 tttagtatacccactgccaca 130338
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>ref|XM_386665.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06489.1)
            partial mRNA
          Length = 3189

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 133  ctctggaatttgccaatggct 153
            |||||||||||||||||||||
Sbjct: 1571 ctctggaatttgccaatggct 1591
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>gb|AC122296.4| Mus musculus BAC clone RP23-265P8 from 6, complete sequence
          Length = 211697

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 329   ggacaaagaagctggagatga 349
             |||||||||||||||||||||
Sbjct: 98950 ggacaaagaagctggagatga 98930
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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 43     caggtactgttgaacaggcaaaggt 67
              |||||| ||||||||||||||||||
Sbjct: 540731 caggtaatgttgaacaggcaaaggt 540755
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>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 308    caacatctcctacatccacaa 328
              |||||||||||||||||||||
Sbjct: 173246 caacatctcctacatccacaa 173266
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>gb|AC105213.5| Homo sapiens chromosome 8, clone RP11-346A14, complete sequence
          Length = 200131

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 364   atgttttgagagcttgttgtt 384
             |||||||||||||||||||||
Sbjct: 55992 atgttttgagagcttgttgtt 55972
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>dbj|AK039826.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430010J10 product:unclassifiable, full
           insert sequence
          Length = 2041

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 329 ggacaaagaagctggagatga 349
           |||||||||||||||||||||
Sbjct: 577 ggacaaagaagctggagatga 597
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>gb|AC139764.5| Homo sapiens 3 BAC RP11-125N10 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 50217

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 385  cctagatctttagtattgctt 405
            |||||||||||||||||||||
Sbjct: 8302 cctagatctttagtattgctt 8282
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>gb|AC151349.2| Xenopus tropicalis clone ISB-39N3, complete sequence
          Length = 100129

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 140   atttgccaatggcttgttctc 160
             |||||||||||||||||||||
Sbjct: 21464 atttgccaatggcttgttctc 21484
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>gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202i7, complete
             sequence
          Length = 226567

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    caggagtttctcttgttttaa 35
             |||||||||||||||||||||
Sbjct: 99135 caggagtttctcttgttttaa 99115
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>gb|AC151325.2| Xenopus tropicalis clone ISB-280A23, complete sequence
          Length = 67620

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 140   atttgccaatggcttgttctc 160
             |||||||||||||||||||||
Sbjct: 37522 atttgccaatggcttgttctc 37502
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>ref|NM_129280.2| Arabidopsis thaliana unknown protein AT2G37240 mRNA, complete cds
          Length = 1086

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 309 aacatctcctacatccacaaggacaaagaagctggagatgaccc 352
           |||||||| || || | ||||||||||||||| || ||||||||
Sbjct: 710 aacatctcttatatacgcaaggacaaagaagccggtgatgaccc 753
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>gb|AY323752.1| Ambystoma mexicanum Rag-1 gene, partial cds
          Length = 1528

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 353  tgaaatggaggatgttttga 372
            ||||||||||||||||||||
Sbjct: 1488 tgaaatggaggatgttttga 1507
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>gb|AC116480.10| Mus musculus chromosome 12, clone RP23-398M9, complete sequence
          Length = 194708

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   tgtacagggaagggtacagg 218
             ||||||||||||||||||||
Sbjct: 31931 tgtacagggaagggtacagg 31950
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>gb|AC124171.3| Mus musculus BAC clone RP23-167E23 from chromosome 13, complete sequence
          Length = 198242

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 408    atctgagaaattagaaataa 427
              ||||||||||||||||||||
Sbjct: 135214 atctgagaaattagaaataa 135195
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>gb|AC124465.6| Mus musculus BAC clone RP24-156M16 from chromosome 13, complete sequence
          Length = 169973

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 408    atctgagaaattagaaataa 427
              ||||||||||||||||||||
Sbjct: 169065 atctgagaaattagaaataa 169084
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>ref|XM_759363.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0819) partial mRNA
          Length = 1939

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 ggactgggaactgtcatttg 240
           ||||||||||||||||||||
Sbjct: 608 ggactgggaactgtcatttg 627
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>gb|AC164163.2| Mus musculus BAC clone RP23-243L21 from chromosome 16, complete
             sequence
          Length = 178656

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   aagctggagatgaccctgaa 356
             ||||||||||||||||||||
Sbjct: 60402 aagctggagatgaccctgaa 60383
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>ref|XM_681678.1| PREDICTED: Danio rerio similar to LIM domain kinase 1 isoform 1
            (LOC558461), mRNA
          Length = 6747

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 98   agtatatgccgatccggatt 117
            ||||||||||||||||||||
Sbjct: 6597 agtatatgccgatccggatt 6616
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>ref|XM_681513.1| PREDICTED: Danio rerio similar to mLimk1 (LOC558313), mRNA
          Length = 1848

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 98   agtatatgccgatccggatt 117
            ||||||||||||||||||||
Sbjct: 1521 agtatatgccgatccggatt 1540
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>gb|AY050345.1| Arabidopsis thaliana At2g37240/F3G5.3 mRNA, complete cds
          Length = 1073

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 309 aacatctcctacatccacaaggacaaagaagctggagatgaccc 352
           |||||||| || || | ||||||||||||||| || ||||||||
Sbjct: 696 aacatctcttatatacgcaaggacaaagaagccggtgatgaccc 739
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>gb|BT006337.1| Arabidopsis thaliana At2g37240/F3G5.3 gene, complete cds
          Length = 747

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 309 aacatctcctacatccacaaggacaaagaagctggagatgaccc 352
           |||||||| || || | ||||||||||||||| || ||||||||
Sbjct: 667 aacatctcttatatacgcaaggacaaagaagccggtgatgaccc 710
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>gb|AC121569.4| Mus musculus BAC clone RP23-228C13 from chromosome 12, complete
             sequence
          Length = 171710

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   tgtacagggaagggtacagg 218
             ||||||||||||||||||||
Sbjct: 38708 tgtacagggaagggtacagg 38689
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>gb|AY691718.1| Plethodon yonahlossee voucher RMB 2458 recombination activating gene
            1 (Rag-1) gene, partial cds
          Length = 1525

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 353  tgaaatggaggatgttttga 372
            ||||||||||||||||||||
Sbjct: 1476 tgaaatggaggatgttttga 1495
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>gb|AY650131.1| Ambystoma gracile recombination activating protein 1 (Rag-1) gene,
            partial cds
          Length = 1525

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 353  tgaaatggaggatgttttga 372
            ||||||||||||||||||||
Sbjct: 1476 tgaaatggaggatgttttga 1495
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>gb|AY650130.1| Ambystoma opacum recombination activating protein 1 (Rag-1) gene,
            partial cds
          Length = 1525

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 353  tgaaatggaggatgttttga 372
            ||||||||||||||||||||
Sbjct: 1476 tgaaatggaggatgttttga 1495
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>gb|AC011235.4| Homo sapiens BAC clone RP11-295A19 from 2, complete sequence
          Length = 184042

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   ttctcaacattcactccatc 175
             ||||||||||||||||||||
Sbjct: 67007 ttctcaacattcactccatc 66988
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>gb|AY088891.1| Arabidopsis thaliana clone 98881 mRNA, complete sequence
          Length = 1084

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 309 aacatctcctacatccacaaggacaaagaagctggagatgaccc 352
           |||||||| || || | ||||||||||||||| || ||||||||
Sbjct: 710 aacatctcttatatacgcaaggacaaagaagccggtgatgaccc 753
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>gb|U82696.2| Homo sapiens chromosome X clone ICRFXc104-F064, ICRFXc104-G0799,
             Qc-14E2, Qc-13D8, Qc-7G11, ICRFXc104-E0681, Qc-11C8,
             Qc-9A9 map q28, complete sequence
          Length = 161664

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   gtactagtggagtggggtgc 497
             ||||||||||||||||||||
Sbjct: 18790 gtactagtggagtggggtgc 18771
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>gb|AF274855.3| Homo sapiens chromosome X clone RP11-366F6 map q28, complete sequence
          Length = 200395

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   gtactagtggagtggggtgc 497
             ||||||||||||||||||||
Sbjct: 74944 gtactagtggagtggggtgc 74925
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>emb|BX649570.7| Zebrafish DNA sequence from clone CH211-13L22 in linkage group 21,
              complete sequence
          Length = 157398

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     agtatatgccgatccggatt 117
              ||||||||||||||||||||
Sbjct: 115830 agtatatgccgatccggatt 115811
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>emb|BX004995.15| Zebrafish DNA sequence from clone CH211-179G4 in linkage group 20,
             complete sequence
          Length = 156160

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    agtatatgccgatccggatt 117
             ||||||||||||||||||||
Sbjct: 79162 agtatatgccgatccggatt 79181
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>gb|AC124991.14| Mus musculus chromosome 12, clone RP23-138M19, complete sequence
          Length = 179111

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   tgtacagggaagggtacagg 218
             ||||||||||||||||||||
Sbjct: 36389 tgtacagggaagggtacagg 36370
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>emb|CT030235.12| Mouse DNA sequence from clone RP23-240F19 on chromosome 16, complete
              sequence
          Length = 236028

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    aagctggagatgaccctgaa 356
              ||||||||||||||||||||
Sbjct: 226153 aagctggagatgaccctgaa 226172
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>gb|U15611.1|AMU15611 Ambystoma mexicanum recombinase activating protein (RAG-1) gene,
           partial cds
          Length = 574

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 353 tgaaatggaggatgttttga 372
           ||||||||||||||||||||
Sbjct: 523 tgaaatggaggatgttttga 542


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,718,748
Number of Sequences: 3902068
Number of extensions: 4718748
Number of successful extensions: 97050
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 96872
Number of HSP's gapped (non-prelim): 173
length of query: 506
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 484
effective length of database: 17,147,199,772
effective search space: 8299244689648
effective search space used: 8299244689648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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