ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak0a02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466000.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1305 Score = 482 bits (243), Expect = e-133 Identities = 440/503 (87%), Gaps = 2/503 (0%) Strand = Plus / Plus Query: 4 tgccaagcaagtacaacaagaggcttgtcaccaaggatccccgatgcctcaaccacatgt 63 ||||||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct: 221 tgccaagcaagtataacaagaggatagtcgccaaggatccccgatgcctcaaccacatgt 280 Query: 64 ttgccgcagaaatattcatgcaccgtttcttgctctctagtgcagtgaggacggttaacc 123 |||| || || ||||| ||||| |||||||||||||||||||| || | ||| | |||| Sbjct: 281 ttgctgctgagatatttatgcatcgtttcttgctctctagtgctgttcgaacgctcaacc 340 Query: 124 ctgaagaggccgactggttctacactcctgtttacactacttgtgatctaactcgtgctg 183 ||||| |||| || |||||||| | ||||||||||||||||||||| | |||| ||||| Sbjct: 341 ctgaacaggctgattggttctatgcccctgtttacactacttgtgatttgactcatgctg 400 Query: 184 gacttccgttaccgttcaaatctccaaggatgatgagaagcgcactccagttcatttcaa 243 ||||||| || || ||||| ||||| ||||||||| | |||||| ||||||| |||||| Sbjct: 401 gacttccattgccattcaagtctcctaggatgatgcggagcgcaatccagtttctttcaa 460 Query: 244 agaggtggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatg 303 | ||||| |||||||||||||||||||||| ||||||||||||||| | |||||||| Sbjct: 461 gaaaatggccattctggaatagaactgatggagcagatcatttctttgttgttccacatg 520 Query: 304 attttgcggcatgctttcactatcaggaagagaatgctattgcgcgtggaattcttccat 363 |||||| ||||||||||||||||||||||||||| ||||||| |||||| || ||||||| Sbjct: 521 attttggggcatgctttcactatcaggaagagaaagctattgagcgtgggatacttccat 580 Query: 364 tgctacgccgtg-ctcattggttcaaacatttggacagaagaatcatgtttgcttgaaag 422 |||| ||||||| | ||||||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 581 tgctccgccgtgccacattggttcaaacttttggacagaagaaccatgtgtgcttgaagg 640 Query: 423 agggatctattacgataccgccatttgcgccaccacagaaaatgcaggctcacttgattc 482 |||| ||||| || ||||| |||| |||||| || ||||||||||| ||||||||||||| Sbjct: 641 agggttctatcactataccaccatatgcgcctcctcagaaaatgcaagctcacttgattc 700 Query: 483 ctcctgatacttccccgttcaat 505 |||||||||| |||||||||||| Sbjct: 701 ctcctgatac-tccccgttcaat 722
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 307 bits (155), Expect = 2e-80 Identities = 284/327 (86%) Strand = Plus / Minus Query: 4 tgccaagcaagtacaacaagaggcttgtcaccaaggatccccgatgcctcaaccacatgt 63 ||||||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct: 18993860 tgccaagcaagtataacaagaggatagtcgccaaggatccccgatgcctcaaccacatgt 18993801 Query: 64 ttgccgcagaaatattcatgcaccgtttcttgctctctagtgcagtgaggacggttaacc 123 |||| || || ||||| ||||| |||||||||||||||||||| || | ||| | |||| Sbjct: 18993800 ttgctgctgagatatttatgcatcgtttcttgctctctagtgctgttcgaacgctcaacc 18993741 Query: 124 ctgaagaggccgactggttctacactcctgtttacactacttgtgatctaactcgtgctg 183 ||||| |||| || |||||||| | ||||||||||||||||||||| | |||| ||||| Sbjct: 18993740 ctgaacaggctgattggttctatgcccctgtttacactacttgtgatttgactcatgctg 18993681 Query: 184 gacttccgttaccgttcaaatctccaaggatgatgagaagcgcactccagttcatttcaa 243 ||||||| || || ||||| ||||| ||||||||| | |||||| ||||||| |||||| Sbjct: 18993680 gacttccattgccattcaagtctcctaggatgatgcggagcgcaatccagtttctttcaa 18993621 Query: 244 agaggtggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatg 303 | ||||| |||||||||||||||||||||| ||||||||||||||| | |||||||| Sbjct: 18993620 gaaaatggccattctggaatagaactgatggagcagatcatttctttgttgttccacatg 18993561 Query: 304 attttgcggcatgctttcactatcagg 330 |||||| |||||||||||||||||||| Sbjct: 18993560 attttggggcatgctttcactatcagg 18993534 Score = 182 bits (92), Expect = 8e-43 Identities = 160/180 (88%), Gaps = 2/180 (1%) Strand = Plus / Minus Query: 327 caggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgct-cattggtt 385 ||||||||||| ||||||| |||||| || ||||||||||| |||||||| |||||||| Sbjct: 18993363 caggaagagaaagctattgagcgtgggatacttccattgctccgccgtgccacattggtt 18993304 Query: 386 caaacatttggacagaagaatcatgtttgcttgaaagagggatctattacgataccgcca 445 ||||| |||||||||||||| ||||| |||||||| ||||| ||||| || ||||| ||| Sbjct: 18993303 caaacttttggacagaagaaccatgtgtgcttgaaggagggttctatcactataccacca 18993244 Query: 446 tttgcgccaccacagaaaatgcaggctcacttgattcctcctgatacttccccgttcaat 505 | |||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 18993243 tatgcgcctcctcagaaaatgcaagctcacttgattcctcctgatac-tccccgttcaat 18993185
>dbj|AP005842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22 Length = 68256 Score = 307 bits (155), Expect = 2e-80 Identities = 284/327 (86%) Strand = Plus / Minus Query: 4 tgccaagcaagtacaacaagaggcttgtcaccaaggatccccgatgcctcaaccacatgt 63 ||||||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct: 49181 tgccaagcaagtataacaagaggatagtcgccaaggatccccgatgcctcaaccacatgt 49122 Query: 64 ttgccgcagaaatattcatgcaccgtttcttgctctctagtgcagtgaggacggttaacc 123 |||| || || ||||| ||||| |||||||||||||||||||| || | ||| | |||| Sbjct: 49121 ttgctgctgagatatttatgcatcgtttcttgctctctagtgctgttcgaacgctcaacc 49062 Query: 124 ctgaagaggccgactggttctacactcctgtttacactacttgtgatctaactcgtgctg 183 ||||| |||| || |||||||| | ||||||||||||||||||||| | |||| ||||| Sbjct: 49061 ctgaacaggctgattggttctatgcccctgtttacactacttgtgatttgactcatgctg 49002 Query: 184 gacttccgttaccgttcaaatctccaaggatgatgagaagcgcactccagttcatttcaa 243 ||||||| || || ||||| ||||| ||||||||| | |||||| ||||||| |||||| Sbjct: 49001 gacttccattgccattcaagtctcctaggatgatgcggagcgcaatccagtttctttcaa 48942 Query: 244 agaggtggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatg 303 | ||||| |||||||||||||||||||||| ||||||||||||||| | |||||||| Sbjct: 48941 gaaaatggccattctggaatagaactgatggagcagatcatttctttgttgttccacatg 48882 Query: 304 attttgcggcatgctttcactatcagg 330 |||||| |||||||||||||||||||| Sbjct: 48881 attttggggcatgctttcactatcagg 48855 Score = 182 bits (92), Expect = 8e-43 Identities = 160/180 (88%), Gaps = 2/180 (1%) Strand = Plus / Minus Query: 327 caggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgct-cattggtt 385 ||||||||||| ||||||| |||||| || ||||||||||| |||||||| |||||||| Sbjct: 48684 caggaagagaaagctattgagcgtgggatacttccattgctccgccgtgccacattggtt 48625 Query: 386 caaacatttggacagaagaatcatgtttgcttgaaagagggatctattacgataccgcca 445 ||||| |||||||||||||| ||||| |||||||| ||||| ||||| || ||||| ||| Sbjct: 48624 caaacttttggacagaagaaccatgtgtgcttgaaggagggttctatcactataccacca 48565 Query: 446 tttgcgccaccacagaaaatgcaggctcacttgattcctcctgatacttccccgttcaat 505 | |||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 48564 tatgcgcctcctcagaaaatgcaagctcacttgattcctcctgatac-tccccgttcaat 48506
>ref|XM_472344.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1263 Score = 287 bits (145), Expect = 2e-74 Identities = 401/485 (82%), Gaps = 1/485 (0%) Strand = Plus / Plus Query: 6 ccaagcaagtacaacaagaggcttgtcaccaaggatccccgatgcctcaaccacatgttt 65 ||||| ||||||||||||| | | |||| |||||||||||| |||||||| ||||||||| Sbjct: 184 ccaagaaagtacaacaagaagatggtcaacaaggatccccggtgcctcaatcacatgttt 243 Query: 66 gccgcagaaatattcatgcaccgtttcttgctctctagtgcagtgaggacggttaaccct 125 || ||||||||||||||||| || ||||||||||| ||||| || |||| | ||||| Sbjct: 244 gctgcagaaatattcatgcatcgcttcttgctctcgagtgctgttcggacactcaacccc 303 Query: 126 gaagaggccgactggttctacactcctgtttacactacttgtgatctaactcgtgctgga 185 | ||||| || ||||| ||||| || ||||| ||||||||||| ||||||| |||||| Sbjct: 304 aaggaggctgattggttttacacgccagtttatactacttgtgacctaactccggctgga 363 Query: 186 cttccgttaccgttcaaatctccaaggatgatgagaagcgcactccagttcatttcaaag 245 || || || || || || || || ||| ||||||| || || |||||| |||||| | Sbjct: 364 ctgcccttgccatttaagtcgccgagggtgatgaggagtgcgatccagtacatttcgcac 423 Query: 246 aggtggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatgat 305 | |||||| |||||||||||||| ||||||| ||| || |||||||| | || |||||| Sbjct: 424 aagtggcccttctggaatagaacagatggagcagaccacttctttgttgtcccgcatgat 483 Query: 306 tttgcggcatgctttcactatcaggaagagaatgctattgcgcgtggaattcttccattg 365 |||| ||||| ||||||||||||||||| || ||||||| |||||||||||| || ||| Sbjct: 484 tttggtgcatgttttcactatcaggaagaaaaagctattgagcgtggaattctaccgttg 543 Query: 366 ctacgccgtgct-cattggttcaaacatttggacagaagaatcatgtttgcttgaaagag 424 || | |||||| | ||||| ||||||||||||||| |||| ||||||||||| |||||| Sbjct: 544 ctgcaacgtgctacgttggtccaaacatttggacaggagaaccatgtttgcttaaaagag 603 Query: 425 ggatctattacgataccgccatttgcgccaccacagaaaatgcaggctcacttgattcct 484 || ||||| || ||||| || | || || |||||||||||||||||||||||||| || Sbjct: 604 ggttctatcactataccaccctacgctcctccacagaaaatgcaggctcacttgatcccc 663 Query: 485 cctga 489 ||||| Sbjct: 664 cctga 668
>dbj|AK107473.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B06, full insert sequence Length = 2766 Score = 287 bits (145), Expect = 2e-74 Identities = 401/485 (82%), Gaps = 1/485 (0%) Strand = Plus / Plus Query: 6 ccaagcaagtacaacaagaggcttgtcaccaaggatccccgatgcctcaaccacatgttt 65 ||||| ||||||||||||| | | |||| |||||||||||| |||||||| ||||||||| Sbjct: 373 ccaagaaagtacaacaagaagatggtcaacaaggatccccggtgcctcaatcacatgttt 432 Query: 66 gccgcagaaatattcatgcaccgtttcttgctctctagtgcagtgaggacggttaaccct 125 || ||||||||||||||||| || ||||||||||| ||||| || |||| | ||||| Sbjct: 433 gctgcagaaatattcatgcatcgcttcttgctctcgagtgctgttcggacactcaacccc 492 Query: 126 gaagaggccgactggttctacactcctgtttacactacttgtgatctaactcgtgctgga 185 | ||||| || ||||| ||||| || ||||| ||||||||||| ||||||| |||||| Sbjct: 493 aaggaggctgattggttttacacgccagtttatactacttgtgacctaactccggctgga 552 Query: 186 cttccgttaccgttcaaatctccaaggatgatgagaagcgcactccagttcatttcaaag 245 || || || || || || || || ||| ||||||| || || |||||| |||||| | Sbjct: 553 ctgcccttgccatttaagtcgccgagggtgatgaggagtgcgatccagtacatttcgcac 612 Query: 246 aggtggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatgat 305 | |||||| |||||||||||||| ||||||| ||| || |||||||| | || |||||| Sbjct: 613 aagtggcccttctggaatagaacagatggagcagaccacttctttgttgtcccgcatgat 672 Query: 306 tttgcggcatgctttcactatcaggaagagaatgctattgcgcgtggaattcttccattg 365 |||| ||||| ||||||||||||||||| || ||||||| |||||||||||| || ||| Sbjct: 673 tttggtgcatgttttcactatcaggaagaaaaagctattgagcgtggaattctaccgttg 732 Query: 366 ctacgccgtgct-cattggttcaaacatttggacagaagaatcatgtttgcttgaaagag 424 || | |||||| | ||||| ||||||||||||||| |||| ||||||||||| |||||| Sbjct: 733 ctgcaacgtgctacgttggtccaaacatttggacaggagaaccatgtttgcttaaaagag 792 Query: 425 ggatctattacgataccgccatttgcgccaccacagaaaatgcaggctcacttgattcct 484 || ||||| || ||||| || | || || |||||||||||||||||||||||||| || Sbjct: 793 ggttctatcactataccaccctacgctcctccacagaaaatgcaggctcacttgatcccc 852 Query: 485 cctga 489 ||||| Sbjct: 853 cctga 857
>dbj|AK073335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026F13, full insert sequence Length = 1704 Score = 287 bits (145), Expect = 2e-74 Identities = 401/485 (82%), Gaps = 1/485 (0%) Strand = Plus / Plus Query: 6 ccaagcaagtacaacaagaggcttgtcaccaaggatccccgatgcctcaaccacatgttt 65 ||||| ||||||||||||| | | |||| |||||||||||| |||||||| ||||||||| Sbjct: 432 ccaagaaagtacaacaagaagatggtcaacaaggatccccggtgcctcaatcacatgttt 491 Query: 66 gccgcagaaatattcatgcaccgtttcttgctctctagtgcagtgaggacggttaaccct 125 || ||||||||||||||||| || ||||||||||| ||||| || |||| | ||||| Sbjct: 492 gctgcagaaatattcatgcatcgcttcttgctctcgagtgctgttcggacactcaacccc 551 Query: 126 gaagaggccgactggttctacactcctgtttacactacttgtgatctaactcgtgctgga 185 | ||||| || ||||| ||||| || ||||| ||||||||||| ||||||| |||||| Sbjct: 552 aaggaggctgattggttttacacgccagtttatactacttgtgacctaactccggctgga 611 Query: 186 cttccgttaccgttcaaatctccaaggatgatgagaagcgcactccagttcatttcaaag 245 || || || || || || || || ||| ||||||| || || |||||| |||||| | Sbjct: 612 ctgcccttgccatttaagtcgccgagggtgatgaggagtgcgatccagtacatttcgcac 671 Query: 246 aggtggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatgat 305 | |||||| |||||||||||||| ||||||| ||| || |||||||| | || |||||| Sbjct: 672 aagtggcccttctggaatagaacagatggagcagaccacttctttgttgtcccgcatgat 731 Query: 306 tttgcggcatgctttcactatcaggaagagaatgctattgcgcgtggaattcttccattg 365 |||| ||||| ||||||||||||||||| || ||||||| |||||||||||| || ||| Sbjct: 732 tttggtgcatgttttcactatcaggaagaaaaagctattgagcgtggaattctaccgttg 791 Query: 366 ctacgccgtgct-cattggttcaaacatttggacagaagaatcatgtttgcttgaaagag 424 || | |||||| | ||||| ||||||||||||||| |||| ||||||||||| |||||| Sbjct: 792 ctgcaacgtgctacgttggtccaaacatttggacaggagaaccatgtttgcttaaaagag 851 Query: 425 ggatctattacgataccgccatttgcgccaccacagaaaatgcaggctcacttgattcct 484 || ||||| || ||||| || | || || |||||||||||||||||||||||||| || Sbjct: 852 ggttctatcactataccaccctacgctcctccacagaaaatgcaggctcacttgatcccc 911 Query: 485 cctga 489 ||||| Sbjct: 912 cctga 916
>gb|AY104835.1| Zea mays PCO128889 mRNA sequence Length = 965 Score = 208 bits (105), Expect = 1e-50 Identities = 286/345 (82%), Gaps = 1/345 (0%) Strand = Plus / Plus Query: 138 tggttctacactcctgtttacactacttgtgatctaactcgtgctggacttccgttaccg 197 |||||||| || || |||||||||||||| ||| ||||| |||||||| || || ||| Sbjct: 29 tggttctatacaccagtttacactacttgcgatttaactaacgctggactgcccttgccg 88 Query: 198 ttcaaatctccaaggatgatgagaagcgcactccagttcatttcaaagaggtggcctttc 257 || || || ||| || ||||||| ||||| |||| | |||||||| | ||||| ||| Sbjct: 89 tttaagtcaccacgggtgatgaggagcgcgatccaatatatttcaaacaaatggcccttc 148 Query: 258 tggaatagaactgatggaggagatcatttctttgtcgctccacatgattttgcggcatgc 317 |||||||| |||||||||| |||||||||||| || | ||| ||||||||||| |||||| Sbjct: 149 tggaataggactgatggagcagatcatttcttcgttgttccgcatgattttgcagcatgc 208 Query: 318 tttcactatcaggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgct 377 || |||||||||||||| || ||||| | ||||||||||||||||||||| || |||||| Sbjct: 209 ttccactatcaggaagaaaaagctatcgagcgtggaattcttccattgctgcgacgtgct 268 Query: 378 -cattggttcaaacatttggacagaagaatcatgtttgcttgaaagagggatctattacg 436 ||||||| ||||| ||||||||| |||||||||||||| |||| ||||| || || | Sbjct: 269 acattggtccaaacctttggacaggagaatcatgtttgcctgaaggagggttccatcatt 328 Query: 437 ataccgccatttgcgccaccacagaaaatgcaggctcacttgatt 481 || || || | ||| || || ||||||||||| |||||||||||| Sbjct: 329 attccaccctatgctcctccgcagaaaatgcaagctcacttgatt 373
>dbj|AK059806.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G11, full insert sequence Length = 1146 Score = 192 bits (97), Expect = 8e-46 Identities = 290/353 (82%), Gaps = 1/353 (0%) Strand = Plus / Plus Query: 138 tggttctacactcctgtttacactacttgtgatctaactcgtgctggacttccgttaccg 197 ||||| ||||| || ||||| ||||||||||| ||||||| |||||||| || || || Sbjct: 6 tggttttacacgccagtttatactacttgtgacctaactccggctggactgcccttgcca 65 Query: 198 ttcaaatctccaaggatgatgagaagcgcactccagttcatttcaaagaggtggcctttc 257 || || || || ||| ||||||| || || |||||| |||||| | | |||||| ||| Sbjct: 66 tttaagtcgccgagggtgatgaggagtgcgatccagtacatttcgcacaagtggcccttc 125 Query: 258 tggaatagaactgatggaggagatcatttctttgtcgctccacatgattttgcggcatgc 317 ||||||||||| ||||||| ||| || |||| ||| | || |||||||||| ||||| Sbjct: 126 tggaatagaacagatggagcagaccacttctatgttgtcccgcatgattttggtgcatgt 185 Query: 318 tttcactatcaggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgct 377 ||||||||||||||||| || ||||||| |||||||||||| || ||||| | |||||| Sbjct: 186 tttcactatcaggaagaaaaagctattgagcgtggaattctaccgttgctgcaacgtgct 245 Query: 378 -cattggttcaaacatttggacagaagaatcatgtttgcttgaaagagggatctattacg 436 | ||||| ||||||||||||||| |||| ||||||||||| |||||||| ||||| || Sbjct: 246 acgttggtccaaacatttggacaggagaaccatgtttgcttaaaagagggttctatcact 305 Query: 437 ataccgccatttgcgccaccacagaaaatgcaggctcacttgattcctcctga 489 ||||| || | || || |||||||||||||||||||||||||| || ||||| Sbjct: 306 ataccaccctacgctcctccacagaaaatgcaggctcacttgatcccccctga 358
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 176 bits (89), Expect = 5e-41 Identities = 266/325 (81%) Strand = Plus / Plus Query: 6 ccaagcaagtacaacaagaggcttgtcaccaaggatccccgatgcctcaaccacatgttt 65 ||||| ||||||||||||| | | |||| |||||||||||| |||||||| ||||||||| Sbjct: 19700310 ccaagaaagtacaacaagaagatggtcaacaaggatccccggtgcctcaatcacatgttt 19700369 Query: 66 gccgcagaaatattcatgcaccgtttcttgctctctagtgcagtgaggacggttaaccct 125 || ||||||||||||||||| || ||||||||||| ||||| || |||| | ||||| Sbjct: 19700370 gctgcagaaatattcatgcatcgcttcttgctctcgagtgctgttcggacactcaacccc 19700429 Query: 126 gaagaggccgactggttctacactcctgtttacactacttgtgatctaactcgtgctgga 185 | ||||| || ||||| ||||| || ||||| ||||||||||| ||||||| |||||| Sbjct: 19700430 aaggaggctgattggttttacacgccagtttatactacttgtgacctaactccggctgga 19700489 Query: 186 cttccgttaccgttcaaatctccaaggatgatgagaagcgcactccagttcatttcaaag 245 || || || || || || || || ||| ||||||| || || |||||| |||||| | Sbjct: 19700490 ctgcccttgccatttaagtcgccgagggtgatgaggagtgcgatccagtacatttcgcac 19700549 Query: 246 aggtggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatgat 305 | |||||| |||||||||||||| ||||||| ||| || |||||||| | || |||||| Sbjct: 19700550 aagtggcccttctggaatagaacagatggagcagaccacttctttgttgtcccgcatgat 19700609 Query: 306 tttgcggcatgctttcactatcagg 330 |||| ||||| ||||||||||||| Sbjct: 19700610 tttggtgcatgttttcactatcagg 19700634 Score = 117 bits (59), Expect = 4e-23 Identities = 138/163 (84%), Gaps = 1/163 (0%) Strand = Plus / Plus Query: 328 aggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgct-cattggttc 386 ||||||| || ||||||| |||||||||||| || ||||| | |||||| | ||||| | Sbjct: 19700822 aggaagaaaaagctattgagcgtggaattctaccgttgctgcaacgtgctacgttggtcc 19700881 Query: 387 aaacatttggacagaagaatcatgtttgcttgaaagagggatctattacgataccgccat 446 |||||||||||||| |||| ||||||||||| |||||||| ||||| || ||||| || | Sbjct: 19700882 aaacatttggacaggagaaccatgtttgcttaaaagagggttctatcactataccaccct 19700941 Query: 447 ttgcgccaccacagaaaatgcaggctcacttgattcctcctga 489 || || |||||||||||||||||||||||||| || ||||| Sbjct: 19700942 acgctcctccacagaaaatgcaggctcacttgatcccccctga 19700984
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 176 bits (89), Expect = 5e-41 Identities = 266/325 (81%) Strand = Plus / Plus Query: 6 ccaagcaagtacaacaagaggcttgtcaccaaggatccccgatgcctcaaccacatgttt 65 ||||| ||||||||||||| | | |||| |||||||||||| |||||||| ||||||||| Sbjct: 151036 ccaagaaagtacaacaagaagatggtcaacaaggatccccggtgcctcaatcacatgttt 151095 Query: 66 gccgcagaaatattcatgcaccgtttcttgctctctagtgcagtgaggacggttaaccct 125 || ||||||||||||||||| || ||||||||||| ||||| || |||| | ||||| Sbjct: 151096 gctgcagaaatattcatgcatcgcttcttgctctcgagtgctgttcggacactcaacccc 151155 Query: 126 gaagaggccgactggttctacactcctgtttacactacttgtgatctaactcgtgctgga 185 | ||||| || ||||| ||||| || ||||| ||||||||||| ||||||| |||||| Sbjct: 151156 aaggaggctgattggttttacacgccagtttatactacttgtgacctaactccggctgga 151215 Query: 186 cttccgttaccgttcaaatctccaaggatgatgagaagcgcactccagttcatttcaaag 245 || || || || || || || || ||| ||||||| || || |||||| |||||| | Sbjct: 151216 ctgcccttgccatttaagtcgccgagggtgatgaggagtgcgatccagtacatttcgcac 151275 Query: 246 aggtggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatgat 305 | |||||| |||||||||||||| ||||||| ||| || |||||||| | || |||||| Sbjct: 151276 aagtggcccttctggaatagaacagatggagcagaccacttctttgttgtcccgcatgat 151335 Query: 306 tttgcggcatgctttcactatcagg 330 |||| ||||| ||||||||||||| Sbjct: 151336 tttggtgcatgttttcactatcagg 151360 Score = 117 bits (59), Expect = 4e-23 Identities = 138/163 (84%), Gaps = 1/163 (0%) Strand = Plus / Plus Query: 328 aggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgct-cattggttc 386 ||||||| || ||||||| |||||||||||| || ||||| | |||||| | ||||| | Sbjct: 151548 aggaagaaaaagctattgagcgtggaattctaccgttgctgcaacgtgctacgttggtcc 151607 Query: 387 aaacatttggacagaagaatcatgtttgcttgaaagagggatctattacgataccgccat 446 |||||||||||||| |||| ||||||||||| |||||||| ||||| || ||||| || | Sbjct: 151608 aaacatttggacaggagaaccatgtttgcttaaaagagggttctatcactataccaccct 151667 Query: 447 ttgcgccaccacagaaaatgcaggctcacttgattcctcctga 489 || || |||||||||||||||||||||||||| || ||||| Sbjct: 151668 acgctcctccacagaaaatgcaggctcacttgatcccccctga 151710
>ref|XM_463683.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1254 Score = 93.7 bits (47), Expect = 5e-16 Identities = 183/227 (80%), Gaps = 1/227 (0%) Strand = Plus / Plus Query: 249 tggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatgatttt 308 ||||||| |||||||||| | || || | |||||||||||||| | |||||||| ||| Sbjct: 418 tggccttactggaatagatcagagggggctgatcatttctttgttacaccacatgacttt 477 Query: 309 gcggcatgctttcactatcaggaagagaatgctattgcgcgtggaattcttccattgcta 368 | || ||||| |||||||||||||| || || |||| |||||||| || |||||||| Sbjct: 478 ggcgcttgcttccactatcaggaagaaaaggcaattggacgtggaatcctcccattgctt 537 Query: 369 cgccgtgct-cattggttcaaacatttggacagaagaatcatgtttgcttgaaagaggga 427 | ||||| | ||||||| || |||||||| ||||| ||||| |||||||| || || Sbjct: 538 cagcgtgccaccctggttcagacctttggacaaaagaaccatgtctgcttgaaggacggc 597 Query: 428 tctattacgataccgccatttgcgccaccacagaaaatgcaggctca 474 || || || || ||||||| ||| || |||||||||||||||||||| Sbjct: 598 tcgatcaccattccgccatatgcacccccacagaaaatgcaggctca 644 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 1 atctgccaagcaagtacaacaagaggcttgtcaccaaggatccccgatgcctcaaccaca 60 |||| ||||||||||||||||||| ||| | | |||||||| | ||||| ||||||| Sbjct: 170 atctcccaagcaagtacaacaagaagctgctgaagaaggatcctaggtgcctgaaccaca 229 Query: 61 tgtttgccgcagaaatattcatgca 85 |||||||||| || || |||||||| Sbjct: 230 tgtttgccgctgagattttcatgca 254
>dbj|AB128823.1| Nicotiana tabacum NtGUT1 gene for NpGUT1 homolog, partial cds Length = 1111 Score = 91.7 bits (46), Expect = 2e-15 Identities = 191/238 (80%), Gaps = 1/238 (0%) Strand = Plus / Plus Query: 257 ctggaatagaactgatggaggagatcatttctttgtcgctccacatgattttgcggcatg 316 ||||||||| || || |||| ||||||||||| || | || |||||||||| || || Sbjct: 357 ctggaataggacagagggagctgatcatttcttcatcacaccccatgattttggtgcttg 416 Query: 317 ctttcactatcaggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgc 376 ||||||||||| ||||| || ||||||| | | ||||||||||||||||| | ||||| Sbjct: 417 ttttcactatcaagaagaaaaagctattgagaggggaattcttccattgctccaacgtgc 476 Query: 377 t-cattggttcaaacatttggacagaagaatcatgtttgcttgaaagagggatctattac 435 | | |||||||||| |||||||| ||||||||||| |||||||| || || ||||| Sbjct: 477 taccctggttcaaacttttggacaacgaaatcatgtttgtttgaaagatggctcaattac 536 Query: 436 gataccgccatttgcgccaccacagaaaatgcaggctcacttgattcctcctgatact 493 || || |||| ||| || ||||| |||||||| | |||||||| ||||| |||||| Sbjct: 537 aattcctccatatgctcccccacaaaaaatgcaatcccacttgatccctccagatact 594 Score = 50.1 bits (25), Expect = 0.007 Identities = 100/125 (80%) Strand = Plus / Plus Query: 45 cgatgcctcaaccacatgtttgccgcagaaatattcatgcaccgtttcttgctctctagt 104 ||||||||||||||||||||||| || ||||| | ||||| |||||| | | ||||| Sbjct: 145 cgatgcctcaaccacatgtttgctgctgaaatctatatgcatcgtttcctattatctagc 204 Query: 105 gcagtgaggacggttaaccctgaagaggccgactggttctacactcctgtttacactact 164 || || | || |||| ||||| || || || |||||||| || ||||||||||| ||| Sbjct: 205 gctgttcgaacctttaatcctgaggaagcagattggttctatacccctgtttacaccact 264 Query: 165 tgtga 169 ||||| Sbjct: 265 tgtga 269
>gb|AY596523.1| Saccharum officinarum clone SCQGLR1019H07, complete sequence Length = 1928 Score = 79.8 bits (40), Expect = 8e-12 Identities = 182/228 (79%), Gaps = 1/228 (0%) Strand = Plus / Plus Query: 249 tggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatgatttt 308 ||||||| |||||| ||| | || || | |||||||||||||||| | |||||||| ||| Sbjct: 819 tggccttactggaacagatcagagggtgcagatcatttctttgtcacaccacatgacttt 878 Query: 309 gcggcatgctttcactatcaggaagagaatgctattgcgcgtggaattcttccattgcta 368 | || ||||| || |||||||||||||| || || | || ||||| ||||| ||||| Sbjct: 879 ggtgcttgcttccattatcaggaagagaaagcaatcggacggggaatccttcccttgctt 938 Query: 369 cgccgtgct-cattggttcaaacatttggacagaagaatcatgtttgcttgaaagaggga 427 | |||||| | ||||||| || |||||||||||||| ||||| ||| |||| || || Sbjct: 939 cagcgtgctacgctggttcagacctttggacagaagaaccatgtctgcctgaaggatggg 998 Query: 428 tctattacgataccgccatttgcgccaccacagaaaatgcaggctcac 475 || || || || ||||||| ||| || || |||||||||||| ||||| Sbjct: 999 tccatcaccatcccgccatatgcacctcctcagaaaatgcagactcac 1046 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 48 tgcctcaaccacatgtttgccgcagaaatattcatgcaccg 88 |||||||||||||||||||| || || || ||||||||||| Sbjct: 618 tgcctcaaccacatgtttgctgcggagatcttcatgcaccg 658
>ref|XM_463682.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1248 Score = 77.8 bits (39), Expect = 3e-11 Identities = 144/179 (80%) Strand = Plus / Plus Query: 198 ttcaaatctccaaggatgatgagaagcgcactccagttcatttcaaagaggtggcctttc 257 ||||| ||||||||||| |||||||| ||| | ||||||||||| | ||||| | Sbjct: 361 ttcaagtctccaaggattatgagaagtgcaattcagttcatttcctcgcattggccctat 420 Query: 258 tggaatagaactgatggaggagatcatttctttgtcgctccacatgattttgcggcatgc 317 ||||| || || ||||| | ||| ||||||||||| | ||||||||||| | |||||| Sbjct: 421 tggaacaggacagatggggcagaccatttctttgttgtgccacatgatttcggagcatgc 480 Query: 318 tttcactatcaggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgc 376 || || |||||||||||||| || |||| ||| ||||| || |||||||| |||||||| Sbjct: 481 ttccattatcaggaagagaaggccattgagcggggaatcctgccattgcttcgccgtgc 539 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgca 85 ||||||||| |||||||||||| ||||| || |||||||| Sbjct: 209 gatgcctcagccacatgtttgctgcagagattttcatgca 248
>dbj|AK068465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156C14, full insert sequence Length = 1739 Score = 77.8 bits (39), Expect = 3e-11 Identities = 144/179 (80%) Strand = Plus / Plus Query: 198 ttcaaatctccaaggatgatgagaagcgcactccagttcatttcaaagaggtggcctttc 257 ||||| ||||||||||| |||||||| ||| | ||||||||||| | ||||| | Sbjct: 501 ttcaagtctccaaggattatgagaagtgcaattcagttcatttcctcgcattggccctat 560 Query: 258 tggaatagaactgatggaggagatcatttctttgtcgctccacatgattttgcggcatgc 317 ||||| || || ||||| | ||| ||||||||||| | ||||||||||| | |||||| Sbjct: 561 tggaacaggacagatggggcagaccatttctttgttgtgccacatgatttcggagcatgc 620 Query: 318 tttcactatcaggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgc 376 || || |||||||||||||| || |||| ||| ||||| || |||||||| |||||||| Sbjct: 621 ttccattatcaggaagagaaggccattgagcggggaatcctgccattgcttcgccgtgc 679 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgca 85 ||||||||| |||||||||||| ||||| || |||||||| Sbjct: 349 gatgcctcagccacatgtttgctgcagagattttcatgca 388
>dbj|AB080676.1| Nicotiana plumbaginifolia NpGUT1 mRNA for pectin-glucuronyltransferase, complete cds Length = 1280 Score = 75.8 bits (38), Expect = 1e-10 Identities = 189/238 (79%), Gaps = 1/238 (0%) Strand = Plus / Plus Query: 257 ctggaatagaactgatggaggagatcatttctttgtcgctccacatgattttgcggcatg 316 ||||||||| || || |||| ||||||||||| || | || || ||||||| || || Sbjct: 198 ctggaataggacagagggagctgatcatttcttcatcacaccccacgattttggtgcttg 257 Query: 317 ctttcactatcaggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgc 376 ||||||||||| ||||| || ||||||| | | ||||||||||||||||| | ||||| Sbjct: 258 ttttcactatcaagaagaaaaagctattgagaggggaattcttccattgctgcaacgtgc 317 Query: 377 t-cattggttcaaacatttggacagaagaatcatgtttgcttgaaagagggatctattac 435 | | ||||||||||| |||||||| ||||||||||| ||||| || || || ||||| Sbjct: 318 taccttggttcaaacttttggacaacgaaatcatgtttgtttgaaggatgggtcaattac 377 Query: 436 gataccgccatttgcgccaccacagaaaatgcaggctcacttgattcctcctgatact 493 || || |||| ||| || || || |||||||| | |||||||| ||||| |||||| Sbjct: 378 aattcctccatatgctcccccgcaaaaaatgcaatcccacttgatccctccagatact 435 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 138 tggttctacactcctgtttacactacttgtga 169 |||||||| || ||||||||||| |||||||| Sbjct: 79 tggttctatacccctgtttacaccacttgtga 110
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 381 tggttcaaacatttggacagaagaatcatgtttgcttgaaagagggatctattacgatac 440 ||||||| || |||||||| ||||| ||||| |||||||| || || || || || || | Sbjct: 40626547 tggttcagacctttggacaaaagaaccatgtctgcttgaaggacggctcgatcaccattc 40626488 Query: 441 cgccatttgcgccaccacagaaaatgcaggctca 474 |||||| ||| || |||||||||||||||||||| Sbjct: 40626487 cgccatatgcacccccacagaaaatgcaggctca 40626454 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 1 atctgccaagcaagtacaacaagaggcttgtcaccaaggatccccgatgcctcaaccaca 60 |||| ||||||||||||||||||| ||| | | |||||||| | ||||| ||||||| Sbjct: 40627362 atctcccaagcaagtacaacaagaagctgctgaagaaggatcctaggtgcctgaaccaca 40627303 Query: 61 tgtttgccgcagaaatattcatgca 85 |||||||||| || || |||||||| Sbjct: 40627302 tgtttgccgctgagattttcatgca 40627278 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Minus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgca 85 ||||||||| |||||||||||| ||||| || |||||||| Sbjct: 40620461 gatgcctcagccacatgtttgctgcagagattttcatgca 40620422 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 198 ttcaaatctccaaggatgatgagaagcgcactccagttcatttc 241 ||||| ||||||||||| |||||||| ||| | ||||||||||| Sbjct: 40620309 ttcaagtctccaaggattatgagaagtgcaattcagttcatttc 40620266 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 326 tcaggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgc 376 |||||||||||| || |||| ||| ||||| || |||||||| |||||||| Sbjct: 40620006 tcaggaagagaaggccattgagcggggaatcctgccattgcttcgccgtgc 40619956 Score = 44.1 bits (22), Expect = 0.45 Identities = 67/82 (81%) Strand = Plus / Minus Query: 249 tggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatgatttt 308 ||||||| |||||||||| | || || | |||||||||||||| | |||||||| ||| Sbjct: 40627114 tggccttactggaatagatcagagggggctgatcatttctttgttacaccacatgacttt 40627055 Query: 309 gcggcatgctttcactatcagg 330 | || ||||| |||||||||| Sbjct: 40627054 ggcgcttgcttccactatcagg 40627033 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gaggccgactggttctacac 148 |||||||||||||||||||| Sbjct: 40609286 gaggccgactggttctacac 40609267
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16 Length = 160925 Score = 67.9 bits (34), Expect = 3e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 381 tggttcaaacatttggacagaagaatcatgtttgcttgaaagagggatctattacgatac 440 ||||||| || |||||||| ||||| ||||| |||||||| || || || || || || | Sbjct: 68525 tggttcagacctttggacaaaagaaccatgtctgcttgaaggacggctcgatcaccattc 68466 Query: 441 cgccatttgcgccaccacagaaaatgcaggctca 474 |||||| ||| || |||||||||||||||||||| Sbjct: 68465 cgccatatgcacccccacagaaaatgcaggctca 68432 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 1 atctgccaagcaagtacaacaagaggcttgtcaccaaggatccccgatgcctcaaccaca 60 |||| ||||||||||||||||||| ||| | | |||||||| | ||||| ||||||| Sbjct: 69340 atctcccaagcaagtacaacaagaagctgctgaagaaggatcctaggtgcctgaaccaca 69281 Query: 61 tgtttgccgcagaaatattcatgca 85 |||||||||| || || |||||||| Sbjct: 69280 tgtttgccgctgagattttcatgca 69256 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Minus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgca 85 ||||||||| |||||||||||| ||||| || |||||||| Sbjct: 62439 gatgcctcagccacatgtttgctgcagagattttcatgca 62400 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 198 ttcaaatctccaaggatgatgagaagcgcactccagttcatttc 241 ||||| ||||||||||| |||||||| ||| | ||||||||||| Sbjct: 62287 ttcaagtctccaaggattatgagaagtgcaattcagttcatttc 62244 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 326 tcaggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgc 376 |||||||||||| || |||| ||| ||||| || |||||||| |||||||| Sbjct: 61984 tcaggaagagaaggccattgagcggggaatcctgccattgcttcgccgtgc 61934 Score = 44.1 bits (22), Expect = 0.45 Identities = 67/82 (81%) Strand = Plus / Minus Query: 249 tggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatgatttt 308 ||||||| |||||||||| | || || | |||||||||||||| | |||||||| ||| Sbjct: 69092 tggccttactggaatagatcagagggggctgatcatttctttgttacaccacatgacttt 69033 Query: 309 gcggcatgctttcactatcagg 330 | || ||||| |||||||||| Sbjct: 69032 ggcgcttgcttccactatcagg 69011 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gaggccgactggttctacac 148 |||||||||||||||||||| Sbjct: 51264 gaggccgactggttctacac 51245
>dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482D04 Length = 144583 Score = 67.9 bits (34), Expect = 3e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 381 tggttcaaacatttggacagaagaatcatgtttgcttgaaagagggatctattacgatac 440 ||||||| || |||||||| ||||| ||||| |||||||| || || || || || || | Sbjct: 106562 tggttcagacctttggacaaaagaaccatgtctgcttgaaggacggctcgatcaccattc 106503 Query: 441 cgccatttgcgccaccacagaaaatgcaggctca 474 |||||| ||| || |||||||||||||||||||| Sbjct: 106502 cgccatatgcacccccacagaaaatgcaggctca 106469 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 1 atctgccaagcaagtacaacaagaggcttgtcaccaaggatccccgatgcctcaaccaca 60 |||| ||||||||||||||||||| ||| | | |||||||| | ||||| ||||||| Sbjct: 107377 atctcccaagcaagtacaacaagaagctgctgaagaaggatcctaggtgcctgaaccaca 107318 Query: 61 tgtttgccgcagaaatattcatgca 85 |||||||||| || || |||||||| Sbjct: 107317 tgtttgccgctgagattttcatgca 107293 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Minus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgca 85 ||||||||| |||||||||||| ||||| || |||||||| Sbjct: 100476 gatgcctcagccacatgtttgctgcagagattttcatgca 100437 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 198 ttcaaatctccaaggatgatgagaagcgcactccagttcatttc 241 ||||| ||||||||||| |||||||| ||| | ||||||||||| Sbjct: 100324 ttcaagtctccaaggattatgagaagtgcaattcagttcatttc 100281 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 326 tcaggaagagaatgctattgcgcgtggaattcttccattgctacgccgtgc 376 |||||||||||| || |||| ||| ||||| || |||||||| |||||||| Sbjct: 100021 tcaggaagagaaggccattgagcggggaatcctgccattgcttcgccgtgc 99971 Score = 44.1 bits (22), Expect = 0.45 Identities = 67/82 (81%) Strand = Plus / Minus Query: 249 tggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatgatttt 308 ||||||| |||||||||| | || || | |||||||||||||| | |||||||| ||| Sbjct: 107129 tggccttactggaatagatcagagggggctgatcatttctttgttacaccacatgacttt 107070 Query: 309 gcggcatgctttcactatcagg 330 | || ||||| |||||||||| Sbjct: 107069 ggcgcttgcttccactatcagg 107048 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gaggccgactggttctacac 148 |||||||||||||||||||| Sbjct: 89301 gaggccgactggttctacac 89282
>ref|NM_125578.2| Arabidopsis thaliana catalytic AT5G61840 mRNA, complete cds Length = 1672 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 389 acatttggacagaagaatcatgtttgcttgaaagagggatctattacgataccgccattt 448 ||||||||||| | ||||||||||||||||||||| || || || || | || |||| | Sbjct: 790 acatttggacaaaggaatcatgtttgcttgaaagaaggttcaatcactgttcctccatat 849 Query: 449 gcgccaccacagaaaatgcaggctcacttgattcc 483 || ||||||||||| |||||| | ||||| ||||| Sbjct: 850 gctccaccacagaagatgcagtcacacttaattcc 884
>gb|AY066039.1| Arabidopsis thaliana AT5g61840/mac9_140 mRNA, complete cds Length = 1248 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 389 acatttggacagaagaatcatgtttgcttgaaagagggatctattacgataccgccattt 448 ||||||||||| | ||||||||||||||||||||| || || || || | || |||| | Sbjct: 553 acatttggacaaaggaatcatgtttgcttgaaagaaggttcaatcactgttcctccatat 612 Query: 449 gcgccaccacagaaaatgcaggctcacttgattcc 483 || ||||||||||| |||||| | ||||| ||||| Sbjct: 613 gctccaccacagaagatgcagtcacacttaattcc 647
>gb|AY054180.1| Arabidopsis thaliana AT5g61840/mac9_140 mRNA, complete cds Length = 1664 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 389 acatttggacagaagaatcatgtttgcttgaaagagggatctattacgataccgccattt 448 ||||||||||| | ||||||||||||||||||||| || || || || | || |||| | Sbjct: 784 acatttggacaaaggaatcatgtttgcttgaaagaaggttcaatcactgttcctccatat 843 Query: 449 gcgccaccacagaaaatgcaggctcacttgattcc 483 || ||||||||||| |||||| | ||||| ||||| Sbjct: 844 gctccaccacagaagatgcagtcacacttaattcc 878
>emb|BX831082.1|CNS0A0UL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS56ZD10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1651 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 389 acatttggacagaagaatcatgtttgcttgaaagagggatctattacgataccgccattt 448 ||||||||||| | ||||||||||||||||||||| || || || || | || |||| | Sbjct: 770 acatttggacaaaggaatcatgtttgcttgaaagaaggttcaatcactgttcctccatat 829 Query: 449 gcgccaccacagaaaatgcaggctcacttgattcc 483 || ||||||||||| |||||| | ||||| ||||| Sbjct: 830 gctccaccacagaagatgcagtcacacttaattcc 864
>gb|AY087390.1| Arabidopsis thaliana clone 34861 mRNA, complete sequence Length = 1670 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 389 acatttggacagaagaatcatgtttgcttgaaagagggatctattacgataccgccattt 448 ||||||||||| | ||||||||||||||||||||| || || || || | || |||| | Sbjct: 790 acatttggacaaaggaatcatgtttgcttgaaagaaggttcaatcactgttcctccatat 849 Query: 449 gcgccaccacagaaaatgcaggctcacttgattcc 483 || ||||||||||| |||||| | ||||| ||||| Sbjct: 850 gctccaccacagaagatgcagtcacacttaattcc 884
>dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC9 Length = 57246 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Minus Query: 389 acatttggacagaagaatcatgtttgcttgaaagagggatctattacgataccgccattt 448 ||||||||||| | ||||||||||||||||||||| || || || || | || |||| | Sbjct: 45689 acatttggacaaaggaatcatgtttgcttgaaagaaggttcaatcactgttcctccatat 45630 Query: 449 gcgccaccacagaaaatgcaggctcacttgattcc 483 || ||||||||||| |||||| | ||||| ||||| Sbjct: 45629 gctccaccacagaagatgcagtcacacttaattcc 45595
>dbj|AB080693.1| Arabidopsis thaliana AtGUT1 mRNA for NpGUT1 homolog, complete cds Length = 1026 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 389 acatttggacagaagaatcatgtttgcttgaaagagggatctattacgataccgccattt 448 ||||||||||| | ||||||||||||||||||||| || || || || | || |||| | Sbjct: 331 acatttggacaaaggaatcatgtttgcttgaaagaaggttcaatcactgttcctccatat 390 Query: 449 gcgccaccacagaaaatgcaggctcacttgattcc 483 || ||||||||||| |||||| | ||||| ||||| Sbjct: 391 gctccaccacagaagatgcagtcacacttaattcc 425
>gb|BT018089.1| Zea mays clone EL01N0552D06.c mRNA sequence Length = 1163 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 249 tggcctttctggaatagaactgatggaggagatcatttctttgtcgctccacatgatttt 308 ||||||| |||||||||| | || || | ||||||||||||||| | || ||||| ||| Sbjct: 40 tggccttactggaatagatcagagggcgctgatcatttctttgtcacgccccatgacttt 99 Query: 309 gcggcatgctttcactatcaggaaga 334 | || |||||||| ||||||||||| Sbjct: 100 ggtgcttgctttcattatcaggaaga 125
>ref|NM_195174.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0047G15.26), mRNA Length = 1206 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgcaccgtttcttgctctctagtg 105 ||||||||| ||||||||||||| |||| || |||||||| || ||| |||| || |||| Sbjct: 167 gatgcctcagccacatgtttgccacagagatcttcatgcatcgcttcctgctgtcgagtg 226 Query: 106 c 106 | Sbjct: 227 c 227
>gb|AC092173.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0095J15, complete sequence Length = 156023 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Minus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgcaccgtttcttgctctctagtg 105 ||||||||| ||||||||||||| |||| || |||||||| || ||| |||| || |||| Sbjct: 11766 gatgcctcagccacatgtttgccacagagatcttcatgcatcgcttcctgctgtcgagtg 11707 Query: 106 c 106 | Sbjct: 11706 c 11706
>gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0047G15, from chromosome 10, complete sequence Length = 166474 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Minus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgcaccgtttcttgctctctagtg 105 ||||||||| ||||||||||||| |||| || |||||||| || ||| |||| || |||| Sbjct: 145296 gatgcctcagccacatgtttgccacagagatcttcatgcatcgcttcctgctgtcgagtg 145237 Query: 106 c 106 | Sbjct: 145236 c 145236
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Minus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgcaccgtttcttgctctctagtg 105 ||||||||| ||||||||||||| |||| || |||||||| || ||| |||| || |||| Sbjct: 5139995 gatgcctcagccacatgtttgccacagagatcttcatgcatcgcttcctgctgtcgagtg 5139936 Query: 106 c 106 | Sbjct: 5139935 c 5139935
>dbj|AK109393.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-A02, full insert sequence Length = 1379 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgcaccgtttcttgctctctagtg 105 ||||||||| ||||||||||||| |||| || |||||||| || ||| |||| || |||| Sbjct: 3 gatgcctcagccacatgtttgccacagagatcttcatgcatcgcttcctgctgtcgagtg 62 Query: 106 c 106 | Sbjct: 63 c 63
>dbj|AK070803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069D21, full insert sequence Length = 1744 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgcaccgtttcttgctctctagtg 105 ||||||||| ||||||||||||| |||| || |||||||| || ||| |||| || |||| Sbjct: 362 gatgcctcagccacatgtttgccacagagatcttcatgcatcgcttcctgctgtcgagtg 421 Query: 106 c 106 | Sbjct: 422 c 422
>dbj|AB080694.1| Oryza sativa (japonica cultivar-group) OsGUT1 mRNA for NpGUT1 homolog, complete cds Length = 1206 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgcaccgtttcttgctctctagtg 105 ||||||||| ||||||||||||| |||| || |||||||| || ||| |||| || |||| Sbjct: 167 gatgcctcagccacatgtttgccacagagatcttcatgcatcgcttcctgctgtcgagtg 226 Query: 106 c 106 | Sbjct: 227 c 227
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Minus Query: 46 gatgcctcaaccacatgtttgccgcagaaatattcatgcaccgtttcttgctctctagtg 105 ||||||||| ||||||||||||| |||| || |||||||| || ||| |||| || |||| Sbjct: 5140782 gatgcctcagccacatgtttgccacagagatcttcatgcatcgcttcctgctgtcgagtg 5140723 Query: 106 c 106 | Sbjct: 5140722 c 5140722
>gb|AY935506.1| Populus tremula x Populus tremuloides secondary cell wall-related glycosyltransferase family 47 mRNA, complete cds Length = 1429 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 189 ccgttaccgttcaaatctccaaggatgatgagaag 223 ||||| || ||||||||||| |||||||||||||| Sbjct: 383 ccgttgcccttcaaatctcctaggatgatgagaag 417
>gb|AY219227.1| Leavenworthia crassa LEAFY-like protein (LFY) gene, complete cds Length = 6798 Score = 44.1 bits (22), Expect = 0.45 Identities = 37/42 (88%) Strand = Plus / Minus Query: 182 tggacttccgttaccgttcaaatctccaaggatgatgagaag 223 ||||||||| || || || ||||||||| ||||||||||||| Sbjct: 302 tggacttcctttgccctttaaatctccacggatgatgagaag 261 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 36 aaggatccccgatgcctcaaccacatgtttgc 67 |||||||| |||| ||||||||||||||||| Sbjct: 448 aaggatccgagatgtctcaaccacatgtttgc 417
>gb|AC184087.2| Populus trichocarpa clone Pop1-58G12, complete sequence Length = 39212 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 252 cctttctggaatagaactgatggaggagatcatttctt 289 |||| ||||||||||||||| |||| ||||||||||| Sbjct: 17285 ccttactggaatagaactgagggagctgatcatttctt 17322
>gb|AC103077.6| Rattus norvegicus BAC CH230-224J5 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 200930 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 catgcaccgtttcttgctctct 101 |||||||||||||||||||||| Sbjct: 193057 catgcaccgtttcttgctctct 193078
>dbj|AP002068.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T8O3 Length = 54386 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 399 agaagaatcatgtttgcttgaa 420 |||||||||||||||||||||| Sbjct: 22256 agaagaatcatgtttgcttgaa 22235
>gb|AC130926.4| Rattus norvegicus BAC CH230-39O11 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 217219 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 80 catgcaccgtttcttgctctct 101 |||||||||||||||||||||| Sbjct: 70483 catgcaccgtttcttgctctct 70462
>gb|AY108460.1| Zea mays PCO105471 mRNA sequence Length = 598 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 54 aaccacatgtttgccgcagaaatattcatgcac 86 ||||||||||||||||| || || ||||||||| Sbjct: 529 aaccacatgtttgccgccgagatcttcatgcac 561
>ref|XM_463681.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1269 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gaggccgactggttctacac 148 |||||||||||||||||||| Sbjct: 313 gaggccgactggttctacac 332
>ref|XM_583607.2| PREDICTED: Bos taurus similar to PHD finger protein 12, transcript variant 1 (LOC507057), mRNA Length = 4205 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ttgtgatctaactcgtgctg 183 |||||||||||||||||||| Sbjct: 1050 ttgtgatctaactcgtgctg 1031
>ref|XM_882383.1| PREDICTED: Bos taurus similar to PHD finger protein 12, transcript variant 6 (LOC507057), mRNA Length = 4367 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ttgtgatctaactcgtgctg 183 |||||||||||||||||||| Sbjct: 1212 ttgtgatctaactcgtgctg 1193
>ref|XM_882366.1| PREDICTED: Bos taurus similar to PHD finger protein 12, transcript variant 4 (LOC507057), mRNA Length = 2840 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ttgtgatctaactcgtgctg 183 |||||||||||||||||||| Sbjct: 1325 ttgtgatctaactcgtgctg 1306
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 gtgctcattggttcaaacat 392 |||||||||||||||||||| Sbjct: 1812644 gtgctcattggttcaaacat 1812625
>emb|AL096703.14|HSJ735G18 Human DNA sequence from clone RP4-735G18 on chromosome 22 Contains a GSS and a CpG Island, complete sequence Length = 55256 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 aaacatttggacagaagaat 406 |||||||||||||||||||| Sbjct: 35273 aaacatttggacagaagaat 35292
>gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, region 88E-88F, BAC clone BACR13A02, complete sequence Length = 166141 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 acatttggacagaagaatca 408 |||||||||||||||||||| Sbjct: 149650 acatttggacagaagaatca 149631
>gb|AC007769.3|AC007769 Drosophila melanogaster, chromosome 3R, region 88F-88F, BAC clone BACR17K19, complete sequence Length = 167918 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 acatttggacagaagaatca 408 |||||||||||||||||||| Sbjct: 49744 acatttggacagaagaatca 49725
>gb|AC027277.5| Homo sapiens chromosome 16 clone RP11-27M24, complete sequence Length = 163735 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 atagaactgatggaggagat 281 |||||||||||||||||||| Sbjct: 22190 atagaactgatggaggagat 22209
>emb|AL928917.9| Zebrafish DNA sequence from clone CH211-103D12 in linkage group 1, complete sequence Length = 176961 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ttctacactcctgtttacac 160 |||||||||||||||||||| Sbjct: 28856 ttctacactcctgtttacac 28875
>dbj|AK073976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076M19, full insert sequence Length = 1853 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gaggccgactggttctacac 148 |||||||||||||||||||| Sbjct: 656 gaggccgactggttctacac 675
>dbj|AK072752.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139D17, full insert sequence Length = 1244 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gaggccgactggttctacac 148 |||||||||||||||||||| Sbjct: 21 gaggccgactggttctacac 40
>dbj|AK063916.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B02, full insert sequence Length = 1621 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gaggccgactggttctacac 148 |||||||||||||||||||| Sbjct: 418 gaggccgactggttctacac 437
>gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46 of 118 of the complete sequence Length = 236375 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 acatttggacagaagaatca 408 |||||||||||||||||||| Sbjct: 194082 acatttggacagaagaatca 194063
>dbj|AP000764.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-811N23, complete sequence Length = 216203 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 cattggttcaaacatttgga 397 |||||||||||||||||||| Sbjct: 50525 cattggttcaaacatttgga 50506
>dbj|AP001284.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-885L14, complete sequence Length = 153591 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 cattggttcaaacatttgga 397 |||||||||||||||||||| Sbjct: 151356 cattggttcaaacatttgga 151337
>gb|AC007436.1| Homo sapiens 12 BAC RP11-436I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163881 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 gccaagcaagtacaacaaga 24 |||||||||||||||||||| Sbjct: 101395 gccaagcaagtacaacaaga 101376 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,240,885 Number of Sequences: 3902068 Number of extensions: 4240885 Number of successful extensions: 75639 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75318 Number of HSP's gapped (non-prelim): 286 length of query: 515 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 492 effective length of database: 17,143,297,704 effective search space: 8434502470368 effective search space used: 8434502470368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
