Clone Name | rbah63p17 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_477156.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1698 Score = 375 bits (189), Expect = e-100 Identities = 321/365 (87%) Strand = Plus / Minus Query: 264 atgttaatcctctcatctctcagcatgttcatgctgggagccagcagtctcgtgtaccga 323 ||||||| ||||||||||| ||||||||||||||||||||||| || ||| ||||| ||| Sbjct: 1655 atgttaaccctctcatctcgcagcatgttcatgctgggagccaacaatcttgtgtagcga 1596 Query: 324 tcaaaataaagaagctgcttcatgagaagagcgaattccctaggaaatttcagcccgtat 383 |||||||| |||||||||||||| |||||||||||||| | ||||||||||| || || Sbjct: 1595 tcaaaatacagaagctgcttcatcagaagagcgaattcgcgaggaaatttcaatccatac 1536 Query: 384 gactcgctaacccttaccagatcaagaaacagtgcattcatctgcctctcgtctacaaca 443 |||||||| ||||| |||||||||||||||| |||||||||||| |||||||| || ||| Sbjct: 1535 gactcgctgaccctcaccagatcaagaaacaatgcattcatctgtctctcgtcaacgaca 1476 Query: 444 acattagcggatacagctgtagcatcagaacttcttgcagctgccactataatttcagta 503 |||||||| ||||| ||||||||||||| | ||||||| | ||| ||||| | ||||||| Sbjct: 1475 acattagccgatactgctgtagcatcaggagttcttgctgttgcaactatgacttcagta 1416 Query: 504 tccaactcctgtagcgatgagaatatcttttgcaagtcctttgcaaaggagtcaacatct 563 ||||| ||||||| ||||||||||| |||| ||||||||||||||| | ||||| | Sbjct: 1415 tccaaatcctgtattgatgagaatattttttccaagtcctttgcaaattcattaacattt 1356 Query: 564 atatcattccctgtagcacccatttcggaaagggccgatgccatagcattgtaatcctca 623 |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 1355 atatcattccctgtagcacccatttcagaaagggctgatgccatagcattataatcgtca 1296 Query: 624 gttgc 628 ||||| Sbjct: 1295 gttgc 1291
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 147 bits (74), Expect = 5e-32 Identities = 119/134 (88%) Strand = Plus / Plus Query: 264 atgttaatcctctcatctctcagcatgttcatgctgggagccagcagtctcgtgtaccga 323 ||||||| ||||||||||| ||||||||||||||||||||||| || ||| ||||| ||| Sbjct: 7185266 atgttaaccctctcatctcgcagcatgttcatgctgggagccaacaatcttgtgtagcga 7185325 Query: 324 tcaaaataaagaagctgcttcatgagaagagcgaattccctaggaaatttcagcccgtat 383 |||||||| |||||||||||||| |||||||||||||| | ||||||||||| || || Sbjct: 7185326 tcaaaatacagaagctgcttcatcagaagagcgaattcgcgaggaaatttcaatccatac 7185385 Query: 384 gactcgctaaccct 397 |||||||| ||||| Sbjct: 7185386 gactcgctgaccct 7185399 Score = 123 bits (62), Expect = 7e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 519 gatgagaatatcttttgcaagtcctttgcaaaggagtcaacatctatatcattccctgta 578 ||||||||||| |||| ||||||||||||||| | ||||| |||||||||||||||| Sbjct: 7186121 gatgagaatattttttccaagtcctttgcaaattcattaacatttatatcattccctgta 7186180 Query: 579 gcacccatttcggaaagggccgatgccatagcattgtaatcctcagttgc 628 ||||||||||| |||||||| |||||||||||||| ||||| |||||||| Sbjct: 7186181 gcacccatttcagaaagggctgatgccatagcattataatcgtcagttgc 7186230 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Plus Query: 399 accagatcaagaaacagtgcattcatctgcctctcgtctacaacaacattagcggataca 458 |||||||||||||||| |||||||||||| |||||||| || ||||||||||| ||||| Sbjct: 7185583 accagatcaagaaacaatgcattcatctgtctctcgtcaacgacaacattagccgatact 7185642 Query: 459 gctgtagcatcagaacttcttgcagctgccactataatttcagtatccaactcctg 514 ||||||||||||| | ||||||| | ||| ||||| | |||||||||||| ||||| Sbjct: 7185643 gctgtagcatcaggagttcttgctgttgcaactatgacttcagtatccaaatcctg 7185698
>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21 Length = 144076 Score = 147 bits (74), Expect = 5e-32 Identities = 119/134 (88%) Strand = Plus / Plus Query: 264 atgttaatcctctcatctctcagcatgttcatgctgggagccagcagtctcgtgtaccga 323 ||||||| ||||||||||| ||||||||||||||||||||||| || ||| ||||| ||| Sbjct: 25750 atgttaaccctctcatctcgcagcatgttcatgctgggagccaacaatcttgtgtagcga 25809 Query: 324 tcaaaataaagaagctgcttcatgagaagagcgaattccctaggaaatttcagcccgtat 383 |||||||| |||||||||||||| |||||||||||||| | ||||||||||| || || Sbjct: 25810 tcaaaatacagaagctgcttcatcagaagagcgaattcgcgaggaaatttcaatccatac 25869 Query: 384 gactcgctaaccct 397 |||||||| ||||| Sbjct: 25870 gactcgctgaccct 25883 Score = 123 bits (62), Expect = 7e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 519 gatgagaatatcttttgcaagtcctttgcaaaggagtcaacatctatatcattccctgta 578 ||||||||||| |||| ||||||||||||||| | ||||| |||||||||||||||| Sbjct: 26605 gatgagaatattttttccaagtcctttgcaaattcattaacatttatatcattccctgta 26664 Query: 579 gcacccatttcggaaagggccgatgccatagcattgtaatcctcagttgc 628 ||||||||||| |||||||| |||||||||||||| ||||| |||||||| Sbjct: 26665 gcacccatttcagaaagggctgatgccatagcattataatcgtcagttgc 26714 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Plus Query: 399 accagatcaagaaacagtgcattcatctgcctctcgtctacaacaacattagcggataca 458 |||||||||||||||| |||||||||||| |||||||| || ||||||||||| ||||| Sbjct: 26067 accagatcaagaaacaatgcattcatctgtctctcgtcaacgacaacattagccgatact 26126 Query: 459 gctgtagcatcagaacttcttgcagctgccactataatttcagtatccaactcctg 514 ||||||||||||| | ||||||| | ||| ||||| | |||||||||||| ||||| Sbjct: 26127 gctgtagcatcaggagttcttgctgttgcaactatgacttcagtatccaaatcctg 26182
>gb|DQ226644.1| Boechera divaricarpa isolate SLW-5-E07 mRNA sequence Length = 693 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 309 agtctcgtgtaccgatcaaaataaagaagctgcttcatgagaagagcgaattccctagga 368 ||||||||||| ||||| ||||| ||||||||||||| ||||| || || || || || Sbjct: 250 agtctcgtgtatcgatcgaaatacagaagctgcttcaatagaagtgcaaactctcttggg 309 Query: 369 aatttcagcccgtatgactcgctaac 394 || || ||||| ||||| |||||||| Sbjct: 310 aacttaagcccatatgattcgctaac 335
>gb|AC111132.7| Mus musculus chromosome 3, clone RP23-340B7, complete sequence Length = 205647 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 138 aaattatatacagttctagcat 159 |||||||||||||||||||||| Sbjct: 129551 aaattatatacagttctagcat 129530
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 330 taaagaagctgcttcatgagaa 351 |||||||||||||||||||||| Sbjct: 1468869 taaagaagctgcttcatgagaa 1468890
>gb|AC104697.2| Homo sapiens BAC clone RP11-454B3 from 2, complete sequence Length = 159797 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 400 ccagatcaagaaacagtgcatt 421 |||||||||||||||||||||| Sbjct: 122705 ccagatcaagaaacagtgcatt 122726
>gb|AC153851.27| Mus musculus 6 BAC RP23-61N4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 217854 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tatatttttaaattcctggct 27 ||||||||||||||||||||| Sbjct: 1812 tatatttttaaattcctggct 1792
>gb|AE000663.1|MMAE000663 Mus musculus TCR beta locus from bases 1 to 250611 (section 1 of 3) of the complete sequence Length = 250611 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tatatttttaaattcctggct 27 ||||||||||||||||||||| Sbjct: 64697 tatatttttaaattcctggct 64677
>gb|AC005368.1| Homo sapiens chromosome 5, BAC clone 194j18 (LBNL H158), complete sequence Length = 118995 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 tttatatttttaaattcctgg 25 ||||||||||||||||||||| Sbjct: 69795 tttatatttttaaattcctgg 69775
>ref|XM_418746.1| PREDICTED: Gallus gallus similar to DNA-binding protein SATB1 (Special AT-rich sequence binding protein 1) (LOC420647), mRNA Length = 3177 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 469 cagaacttcttgcagctgcca 489 ||||||||||||||||||||| Sbjct: 1316 cagaacttcttgcagctgcca 1336
>gb|AC133201.2| Mus musculus BAC clone RP23-74A8 from chromosome 3, complete sequence Length = 184783 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 tatttttaaattcctggctca 29 ||||||||||||||||||||| Sbjct: 108735 tatttttaaattcctggctca 108755
>gb|AC098482.2| Homo sapiens chromosome 3 clone RP11-839L21, complete sequence Length = 211533 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 acactagaaccaattcattct 242 ||||||||||||||||||||| Sbjct: 93615 acactagaaccaattcattct 93595
>gb|AC008781.7| Homo sapiens chromosome 5 clone CTD-2024I7, complete sequence Length = 205516 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 tttatatttttaaattcctgg 25 ||||||||||||||||||||| Sbjct: 48030 tttatatttttaaattcctgg 48050
>gb|AC115771.13| Mus musculus chromosome 19, clone RP23-116D4, complete sequence Length = 209515 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 tcattctctggtctgcttgct 256 ||||||||||||||||||||| Sbjct: 170164 tcattctctggtctgcttgct 170184
>emb|CR974477.12| Pig DNA sequence from clone CH242-217L7 on chromosome 17, complete sequence Length = 204661 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tgattttatatttttaaattc 21 ||||||||||||||||||||| Sbjct: 3521 tgattttatatttttaaattc 3541
>gb|AC161768.25| Mus musculus 6 BAC RP23-37C14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196068 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tatatttttaaattcctggct 27 ||||||||||||||||||||| Sbjct: 98657 tatatttttaaattcctggct 98637
>ref|XM_642088.1| Dictyostelium discoideum hypothetical protein (DDB0189420), partial mRNA Length = 2901 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tgattttatatttttaaatt 20 |||||||||||||||||||| Sbjct: 357 tgattttatatttttaaatt 338
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 cttaccagatcaagaaacag 415 |||||||||||||||||||| Sbjct: 374764 cttaccagatcaagaaacag 374745
>gb|AC127592.6| Mus musculus BAC clone RP23-330A5 from chromosome 16, complete sequence Length = 185326 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 atccaaaagcaatttctgctccaa 64 ||||||||||||||||||| |||| Sbjct: 139284 atccaaaagcaatttctgccccaa 139307
>gb|AC102745.10| Mus musculus chromosome 17, clone RP24-371L2, complete sequence Length = 189211 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 cttaccagatcaagaaacag 415 |||||||||||||||||||| Sbjct: 109799 cttaccagatcaagaaacag 109780
>gb|AC102503.8| Mus musculus chromosome 16, clone RP24-383M8, complete sequence Length = 220467 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 atccaaaagcaatttctgctccaa 64 ||||||||||||||||||| |||| Sbjct: 163338 atccaaaagcaatttctgccccaa 163315
>gb|AC145076.8| Mus musculus chromosome 10, clone RP24-528G5, complete sequence Length = 224534 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 acatctatatcattccctgt 577 |||||||||||||||||||| Sbjct: 163061 acatctatatcattccctgt 163080
>gb|AY176046.1| Mus musculus thyroid hormone receptor associated protein 220 (Pparbp) gene, complete cds Length = 46739 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ttttatatttttaaattcct 23 |||||||||||||||||||| Sbjct: 21077 ttttatatttttaaattcct 21096
>gb|AC127579.4| Mus musculus BAC clone RP23-434O19 from chromosome 14, complete sequence Length = 181361 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tgattttatatttttaaatt 20 |||||||||||||||||||| Sbjct: 167030 tgattttatatttttaaatt 167049
>gb|AC087430.3| Homo sapiens chromosome 3 clone RP11-242C8 map 3p, complete sequence Length = 152289 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 gagtcaacatctatatcatt 571 |||||||||||||||||||| Sbjct: 134467 gagtcaacatctatatcatt 134486
>gb|U88177.1| Caenorhabditis elegans cosmid F53E10, complete sequence Length = 26276 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ttttatatttttaaattcct 23 |||||||||||||||||||| Sbjct: 10805 ttttatatttttaaattcct 10786
>gb|AC114403.15| Mus musculus chromosome 1, clone RP23-197H1, complete sequence Length = 221305 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 ttttatatttttaaattcctggct 27 ||||||||||||||||| |||||| Sbjct: 182598 ttttatatttttaaattactggct 182575
>emb|BX927075.13| Zebrafish DNA sequence from clone CH211-234G3 in linkage group 3, complete sequence Length = 182166 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tgattttatatttttaaatt 20 |||||||||||||||||||| Sbjct: 80255 tgattttatatttttaaatt 80236
>emb|AL355137.23| Human DNA sequence from clone RP11-511D14 on chromosome 6p23-24.3 Contains the gene for a novel protein isentical to ribosomal protein L15 (RPL15), complete sequence Length = 190223 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 atcttttgcaagtcctttgcaaag 551 ||||||||||||||||||| |||| Sbjct: 27832 atcttttgcaagtcctttgaaaag 27855
>gb|AC164298.2| Mus musculus BAC clone RP23-347H20 from chromosome 14, complete sequence Length = 203395 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 aaacagtgcattcatctgcc 429 |||||||||||||||||||| Sbjct: 58928 aaacagtgcattcatctgcc 58909
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 ggatacagctgtagcatcag 471 |||||||||||||||||||| Sbjct: 2761178 ggatacagctgtagcatcag 2761159
>emb|BX284749.1|NCB10C3 Neurospora crassa DNA linkage group II BAC clone B10C3 Length = 71352 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 557 aacatctatatcattccctg 576 |||||||||||||||||||| Sbjct: 5738 aacatctatatcattccctg 5757
>gb|AC107965.4| Homo sapiens chromosome 8, clone CTD-2332A4, complete sequence Length = 112032 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ttttatatttttaaattcct 23 |||||||||||||||||||| Sbjct: 98924 ttttatatttttaaattcct 98943
>emb|BX294178.13| Zebrafish DNA sequence from clone CH211-271C18 in linkage group 7, complete sequence Length = 131441 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ctcatctctcagcatgttca 294 |||||||||||||||||||| Sbjct: 106453 ctcatctctcagcatgttca 106434
>gb|AC009898.6| Homo sapiens chromosome 8, clone RP11-138H14, complete sequence Length = 168539 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ttttatatttttaaattcct 23 |||||||||||||||||||| Sbjct: 116643 ttttatatttttaaattcct 116624
>gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence Length = 155710 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gtatgaaattatatacagtt 152 |||||||||||||||||||| Sbjct: 2444 gtatgaaattatatacagtt 2425
>gb|AC027123.7| Homo sapiens chromosome 3 clone RP11-392M7 map 3p, complete sequence Length = 191566 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 gagtcaacatctatatcatt 571 |||||||||||||||||||| Sbjct: 25542 gagtcaacatctatatcatt 25561
>emb|BX255955.3| Zebrafish DNA sequence from clone CH211-249G22 in linkage group 18, complete sequence Length = 146105 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tgattttatatttttaaatt 20 |||||||||||||||||||| Sbjct: 54676 tgattttatatttttaaatt 54695
>emb|Z17126.1|HS248ZC1 H. sapiens (D19S225) DNA segment containing (CA) repeat; clone AFM248zc1; single read Length = 332 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cagcatgttcatgctgggag 303 |||||||||||||||||||| Sbjct: 41 cagcatgttcatgctgggag 60
>gb|AC155257.1| Mus musculus BAC clone RP24-109N5 from 16, complete sequence Length = 185931 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 aattcctcaaatgatggaca 224 |||||||||||||||||||| Sbjct: 143542 aattcctcaaatgatggaca 143561
>emb|CR318656.3| Zebrafish DNA sequence from clone CH211-88D2 in linkage group 22, complete sequence Length = 87766 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 gattttatatttttaaattc 21 |||||||||||||||||||| Sbjct: 46289 gattttatatttttaaattc 46308
>emb|BX005202.14| Zebrafish DNA sequence from clone DKEY-224N5 in linkage group 13, complete sequence Length = 220733 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ctcatctctcagcatgttca 294 |||||||||||||||||||| Sbjct: 117755 ctcatctctcagcatgttca 117736
>gb|AC007773.1|AC007773 Homo sapiens chromosome 19, BAC 275282 (CIT-B-325L16), complete sequence Length = 180316 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cagcatgttcatgctgggag 303 |||||||||||||||||||| Sbjct: 62351 cagcatgttcatgctgggag 62370
>emb|BX571725.1| Carp DNA sequence from clone carpf-118, complete sequence Length = 38194 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 cttttgcaagtcctttgcaa 549 |||||||||||||||||||| Sbjct: 28879 cttttgcaagtcctttgcaa 28860
>emb|CT010573.10| Mouse DNA sequence from clone RP23-238K22 on chromosome 16, complete sequence Length = 199723 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 aattcctcaaatgatggaca 224 |||||||||||||||||||| Sbjct: 106124 aattcctcaaatgatggaca 106143
>emb|AL591205.13| Mouse DNA sequence from clone RP23-333M1 on chromosome 11, complete sequence Length = 183369 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ttttatatttttaaattcct 23 |||||||||||||||||||| Sbjct: 60563 ttttatatttttaaattcct 60544 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,746,154 Number of Sequences: 3902068 Number of extensions: 6746154 Number of successful extensions: 140672 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140458 Number of HSP's gapped (non-prelim): 209 length of query: 634 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 611 effective length of database: 17,143,297,704 effective search space: 10474554897144 effective search space used: 10474554897144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)