Clone Name | rbah63p03 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... | 149 | 4e-36 | 2 | DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... | 102 | 5e-22 | 3 | DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... | 98 | 1e-20 | 4 | BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (E... | 29 | 5.8 | 5 | SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog | 29 | 5.8 | 6 | PUR1_SYNY3 (Q55621) Amidophosphoribosyltransferase precursor (EC... | 28 | 9.9 |
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>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 Score = 149 bits (375), Expect = 4e-36 Identities = 74/83 (89%), Positives = 78/83 (93%), Gaps = 2/83 (2%) Frame = -3 Query: 436 AYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKEGKL 257 AYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF ENVESGHPLVKEGKL Sbjct: 313 AYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF--ENVESGHPLVKEGKL 370 Query: 256 ANLLAWRAEEDSLEE--GAVLCE 194 ANLLAWRAEE+SLEE GA+LCE Sbjct: 371 ANLLAWRAEEESLEEGTGALLCE 393
>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 398 Score = 102 bits (253), Expect = 5e-22 Identities = 51/75 (68%), Positives = 59/75 (78%) Frame = -3 Query: 436 AYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKEGKL 257 AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV HCFE EN+ + P VKEGKL Sbjct: 320 AYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAENMVNPAP-VKEGKL 378 Query: 256 ANLLAWRAEEDSLEE 212 NLL W ED+LEE Sbjct: 379 GNLLPW--GEDALEE 391
>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 400 Score = 97.8 bits (242), Expect = 1e-20 Identities = 49/77 (63%), Positives = 59/77 (76%), Gaps = 1/77 (1%) Frame = -3 Query: 433 YDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESG-HPLVKEGKL 257 YDCNN+VEQELP GG+L+YQSF A E+ A SP+SVFHCF+GENVES P+ K+ KL Sbjct: 321 YDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDGENVESAPPPMKKDYKL 378 Query: 256 ANLLAWRAEEDSLEEGA 206 ANLL W E D++EE A Sbjct: 379 ANLLCWEEEADAMEEKA 395
>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)| (BSU1-like protein 3) Length = 715 Score = 28.9 bits (63), Expect = 5.8 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 7/85 (8%) Frame = +2 Query: 191 SLAQHRALLQRILLRPPCEQVGKLAFLDQRVAALHILALEAVEDG-----PGRPGGDSNL 355 S A H A PP G+ F D+R L A +AV G P P G +L Sbjct: 301 SAASHAAAAAAATNTPPGRSPGRYGFSDERTGELPESAPDAVVLGSPVAPPATPSGKPSL 360 Query: 356 FIX--GKALVDEDAPAGELLLHDVV 424 + A+ + PAG L H V Sbjct: 361 SLIKPDSAVPNSVIPAGVRLHHRAV 385
>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog| Length = 713 Score = 28.9 bits (63), Expect = 5.8 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -3 Query: 343 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 203 +AGSP S G P+ + N+ +W A +DS+ EGAV Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297
>PUR1_SYNY3 (Q55621) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)| (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 495 Score = 28.1 bits (61), Expect = 9.9 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Frame = -3 Query: 355 EVAVSAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSL----EEGAVLCE** 188 EV + SP CF G + +S L+ +A + E DSL +EG +LC Sbjct: 402 EVHMRISSPPVTHPCFYGIDTDSQDQLIAARLTVAEIAEQIEVDSLAYLSQEGMLLCT-G 460 Query: 187 DDFCCRCSVC 158 +D CS C Sbjct: 461 EDISHFCSAC 470 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,640,369 Number of Sequences: 219361 Number of extensions: 870205 Number of successful extensions: 2628 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2581 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2624 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)