Clone Name | rbah63o18 |
---|---|
Clone Library Name | barley_pub |
>emb|BX546477.9| Zebrafish DNA sequence from clone DKEYP-79C5 in linkage group 9, complete sequence Length = 58124 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 aaataaaatttggtaataaag 288 ||||||||||||||||||||| Sbjct: 28842 aaataaaatttggtaataaag 28862
>emb|BX322234.7| Human DNA sequence from clone XXyac-65C7_A on chromosome 6 Contains the THBS2 gene for thrombospondin 2, two novel genes, a chromosome 6 open reading frame 55 (C6orf55) pseudogene and two CpG islands, complete sequence Length = 159175 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 cttctccagtttctccttttc 448 ||||||||||||||||||||| Sbjct: 106203 cttctccagtttctccttttc 106183
>emb|CR937028.1| Zebrafish DNA sequence from clone DKEYP-79C5 in linkage group 9, complete sequence Length = 58124 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 aaataaaatttggtaataaag 288 ||||||||||||||||||||| Sbjct: 28842 aaataaaatttggtaataaag 28862
>emb|BX571674.7| Zebrafish DNA sequence from clone DKEY-193C22 in linkage group 5, complete sequence Length = 195181 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 catgtacctattgaaataaaa 275 ||||||||||||||||||||| Sbjct: 177337 catgtacctattgaaataaaa 177317
>gb|AC144753.3| Ornithorhynchus anatinus clone OA_Bb-228F7, complete sequence Length = 116899 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 325 ctcgtgggggaagatggacaacata 349 |||| |||||||||||||||||||| Sbjct: 98676 ctcgagggggaagatggacaacata 98652
>gb|AC139562.8| Mus musculus chromosome 5, clone RP24-180G11, complete sequence Length = 168158 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 acacaccatacacactcagt 203 |||||||||||||||||||| Sbjct: 164776 acacaccatacacactcagt 164757
>ref|XM_654820.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2308.2), mRNA Length = 2487 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cactagctgcaacacaccat 192 |||||||||||||||||||| Sbjct: 2258 cactagctgcaacacaccat 2277
>gb|AC025724.3| Caenorhabditis elegans cosmid Y67D8C, complete sequence Length = 103670 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 tacctattgaaataaaatttggta 282 |||||||| ||||||||||||||| Sbjct: 48809 tacctattcaaataaaatttggta 48832
>gb|AC096917.3| Homo sapiens chromosome 3 clone RP11-94D19, complete sequence Length = 170184 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 tggcttctccagtttctccttttc 448 ||||||||||| |||||||||||| Sbjct: 108077 tggcttctccattttctccttttc 108100
>emb|AL096867.15|HSJ365O19 Human DNA sequence from clone RP3-365O19 on chromosome 6q23.1-24.3 Contains the 5' end of the GRM1 gene for metabotropic glutamate receptor 1, complete sequence Length = 156935 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 attgaaataaaatttggtaa 283 |||||||||||||||||||| Sbjct: 112529 attgaaataaaatttggtaa 112548
>gb|AC149149.3| Xenopus tropicalis clone ISB-175F5, complete sequence Length = 116498 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 ggacaacataggggtgtttgtccc 363 ||||||||||| |||||||||||| Sbjct: 97282 ggacaacatagaggtgtttgtccc 97305
>emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in linkage group 8, complete sequence Length = 272840 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 183 aacacaccatacacactcagtgacactc 210 ||||||||||||||||||| | |||||| Sbjct: 193786 aacacaccatacacactcattcacactc 193759
>gb|AC138071.2| Homo sapiens chromosome 3 clone RP11-504G20, complete sequence Length = 194062 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 tggcttctccagtttctccttttc 448 ||||||||||| |||||||||||| Sbjct: 42844 tggcttctccattttctccttttc 42867
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgggtctcgtgggggaagat 339 |||||||||||||||||||| Sbjct: 1482823 cgggtctcgtgggggaagat 1482804
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgggtctcgtgggggaagat 339 |||||||||||||||||||| Sbjct: 1157518 cgggtctcgtgggggaagat 1157499
>gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, complete sequence Length = 233632 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 acacaccatacacactcagt 203 |||||||||||||||||||| Sbjct: 52857 acacaccatacacactcagt 52838 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,857,474 Number of Sequences: 3902068 Number of extensions: 3857474 Number of successful extensions: 75477 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75441 Number of HSP's gapped (non-prelim): 36 length of query: 467 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 445 effective length of database: 17,147,199,772 effective search space: 7630503898540 effective search space used: 7630503898540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)